RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 A0A1B0GUL7 405 aa25.76■■□□□ 1.71
VPS28-212ENST00000530836 GRIPAP1Q4V328 841 aa25.76■■□□□ 1.71
VPS28-212ENST00000530836 SLC51AQ86UW1 340 aa25.76■■□□□ 1.71
VPS28-212ENST00000530836 NEUROD6Q96NK8 337 aa25.76■■□□□ 1.71
VPS28-212ENST00000530836 BSDC1Q9NW68 430 aaPredicted RBP25.76■■□□□ 1.71
VPS28-212ENST00000530836 DBNDD2Q9BQY9 259 aa25.75■■□□□ 1.71
VPS28-212ENST00000530836 ARFGEF1Q9Y6D6 1849 aa25.75■■□□□ 1.71
VPS28-212ENST00000530836 REC8O95072 547 aa25.74■■□□□ 1.71
VPS28-212ENST00000530836 COL4A1P02462 1669 aa25.74■■□□□ 1.71
VPS28-212ENST00000530836 PDE8BO95263 885 aa25.74■■□□□ 1.71
VPS28-212ENST00000530836 CHMLP26374 656 aa25.74■■□□□ 1.71
VPS28-212ENST00000530836 C22orf23Q9BZE7 217 aa25.74■■□□□ 1.71
VPS28-212ENST00000530836 NFKBIEO00221 500 aa25.73■■□□□ 1.71
VPS28-212ENST00000530836 TIMM10P62072 90 aa25.73■■□□□ 1.71
VPS28-212ENST00000530836 TICAM2Q86XR7 235 aa25.73■■□□□ 1.71
VPS28-212ENST00000530836 VGLL2Q8N8G2 317 aa25.73■■□□□ 1.71
VPS28-212ENST00000530836 PPIL4Q8WUA2 492 aaKnown RBP eCLIP25.73■■□□□ 1.71
VPS28-212ENST00000530836 DDRGK1Q96HY6 314 aa25.73■■□□□ 1.71
VPS28-212ENST00000530836 HIP1O00291 1037 aa25.72■■□□□ 1.71
VPS28-212ENST00000530836 ATP2B3Q16720 1220 aa25.72■■□□□ 1.71
VPS28-212ENST00000530836 CCDC158Q5M9N0 1113 aa25.72■■□□□ 1.71
VPS28-212ENST00000530836 TAF1P21675 1872 aa25.72■■□□□ 1.71
VPS28-212ENST00000530836 SNED1Q8TER0 1413 aa25.72■■□□□ 1.71
VPS28-212ENST00000530836 TAOK3Q9H2K8 898 aa25.71■■□□□ 1.71
VPS28-212ENST00000530836 BOLA2Q9H3K6 86 aa25.71■■□□□ 1.71
VPS28-212ENST00000530836 RBM25P49756 843 aaKnown RBP25.7■■□□□ 1.71
VPS28-212ENST00000530836 FKBP4Q02790 459 aaKnown RBP eCLIP25.7■■□□□ 1.71
VPS28-212ENST00000530836 PUM3Q15397 648 aaKnown RBP25.7■■□□□ 1.71
VPS28-212ENST00000530836 MPNDQ8N594 471 aa25.7■■□□□ 1.71
VPS28-212ENST00000530836 PSMD1Q99460 953 aa25.7■■□□□ 1.71
VPS28-212ENST00000530836 HAUS7Q99871 368 aa25.7■■□□□ 1.71
VPS28-212ENST00000530836 MINPP1Q9UNW1 487 aa25.7■■□□□ 1.71
VPS28-212ENST00000530836 LTBP3Q9NS15 1303 aa25.7■■□□□ 1.7
VPS28-212ENST00000530836 GORABQ5T7V8 394 aa25.7■■□□□ 1.7
VPS28-212ENST00000530836 EPB41L2O43491 1005 aaKnown RBP25.69■■□□□ 1.7
VPS28-212ENST00000530836 MAP4K4O95819 1239 aaPredicted RBP25.69■■□□□ 1.7
VPS28-212ENST00000530836 RASSF7Q02833 373 aa25.69■■□□□ 1.7
VPS28-212ENST00000530836 DPP8Q6V1X1 898 aaPredicted RBP25.69■■□□□ 1.7
VPS28-212ENST00000530836 LPIN2Q92539 896 aa25.69■■□□□ 1.7
VPS28-212ENST00000530836 ESYT1Q9BSJ8 1104 aa25.69■■□□□ 1.7
VPS28-212ENST00000530836 NSFL1CQ9UNZ2 370 aaKnown RBP25.69■■□□□ 1.7
VPS28-212ENST00000530836 AK9Q5TCS8 1911 aa25.69■■□□□ 1.7
VPS28-212ENST00000530836 CACNA1SQ13698 1873 aa25.68■■□□□ 1.7
VPS28-212ENST00000530836 GPSM2P81274 684 aa25.68■■□□□ 1.7
VPS28-212ENST00000530836 RUFY2Q8WXA3 655 aa25.68■■□□□ 1.7
VPS28-212ENST00000530836 XAGE2Q96GT9 111 aa25.68■■□□□ 1.7
VPS28-212ENST00000530836 RTFDC1Q9BY42 306 aaPredicted RBP25.68■■□□□ 1.7
VPS28-212ENST00000530836 ZNF512BQ96KM6 892 aaPredicted RBP25.67■■□□□ 1.7
VPS28-212ENST00000530836 IPO9Q96P70 1041 aaKnown RBP25.67■■□□□ 1.7
VPS28-212ENST00000530836 PODXL2Q9NZ53 605 aa25.67■■□□□ 1.7
VPS28-212ENST00000530836 RFX7Q2KHR2 1363 aa25.67■■□□□ 1.7
VPS28-212ENST00000530836 SLC5A1P13866 664 aa25.66■■□□□ 1.7
VPS28-212ENST00000530836 LMNB1P20700 586 aa25.66■■□□□ 1.7
VPS28-212ENST00000530836 FGFR2P21802 821 aa25.66■■□□□ 1.7
VPS28-212ENST00000530836 PRELPP51888 382 aa25.66■■□□□ 1.7
VPS28-212ENST00000530836 DIAPH3Q9NSV4 1193 aa25.66■■□□□ 1.7
VPS28-212ENST00000530836 ANKIB1Q9P2G1 1089 aa25.66■■□□□ 1.7
VPS28-212ENST00000530836 TTC39AQ5SRH9 613 aa25.65■■□□□ 1.7
VPS28-212ENST00000530836 SUPT20HQ8NEM7 779 aa25.65■■□□□ 1.7
VPS28-212ENST00000530836 IFIT1P09914 478 aaKnown RBP25.64■■□□□ 1.7
VPS28-212ENST00000530836 ANKRD2Q9GZV1 360 aa25.64■■□□□ 1.7
VPS28-212ENST00000530836 ZNF277Q9NRM2 450 aaPredicted RBP25.64■■□□□ 1.7
VPS28-212ENST00000530836 POLLQ9UGP5 575 aa25.64■■□□□ 1.7
VPS28-212ENST00000530836 XDHP47989 1333 aa25.64■■□□□ 1.7
VPS28-212ENST00000530836 CHRNDQ07001 517 aa25.63■■□□□ 1.69
VPS28-212ENST00000530836 FSD1Q9BTV5 496 aa25.63■■□□□ 1.69
VPS28-212ENST00000530836 USP26Q9BXU7 913 aa25.63■■□□□ 1.69
VPS28-212ENST00000530836 C9orf131Q5VYM1 1079 aa25.63■■□□□ 1.69
VPS28-212ENST00000530836 TBC1D16Q8TBP0 767 aa25.63■■□□□ 1.69
VPS28-212ENST00000530836 VPS33BQ9H267 617 aa25.63■■□□□ 1.69
VPS28-212ENST00000530836 GGA1Q9UJY5 639 aa25.63■■□□□ 1.69
VPS28-212ENST00000530836 LRRC37AA6NMS7 1700 aa25.62■■□□□ 1.69
VPS28-212ENST00000530836 SPEF2Q9C093 1822 aa25.62■■□□□ 1.69
VPS28-212ENST00000530836 FER1L6Q2WGJ9 1857 aa25.62■■□□□ 1.69
VPS28-212ENST00000530836 ADORA1P30542 326 aa25.62■■□□□ 1.69
VPS28-212ENST00000530836 C6orf229H3BNL8 230 aa25.61■■□□□ 1.69
VPS28-212ENST00000530836 SGSM2O43147 1006 aa25.61■■□□□ 1.69
VPS28-212ENST00000530836 UQCRFS1P1P0C7P4 283 aa25.61■■□□□ 1.69
VPS28-212ENST00000530836 ATP2B4P23634 1241 aa25.61■■□□□ 1.69
VPS28-212ENST00000530836 LRRFIP1Q32MZ4 808 aaKnown RBP25.61■■□□□ 1.69
VPS28-212ENST00000530836 DNAJC2Q99543 621 aaKnown RBP25.61■■□□□ 1.69
VPS28-212ENST00000530836 PAG1Q9NWQ8 432 aa25.61■■□□□ 1.69
VPS28-212ENST00000530836 RNF181Q9P0P0 153 aa25.61■■□□□ 1.69
VPS28-212ENST00000530836 RAD50Q92878 1312 aa25.6■■□□□ 1.69
VPS28-212ENST00000530836 IARSP41252 1262 aaKnown RBP25.6■■□□□ 1.69
VPS28-212ENST00000530836 KBTBD3Q8NAB2 608 aa25.6■■□□□ 1.69
VPS28-212ENST00000530836 UFL1O94874 794 aa25.59■■□□□ 1.69
VPS28-212ENST00000530836 UBE4AQ14139 1066 aa25.59■■□□□ 1.69
VPS28-212ENST00000530836 HELBQ8NG08 1087 aaPredicted RBP25.59■■□□□ 1.69
VPS28-212ENST00000530836 LEMD3Q9Y2U8 911 aa25.59■■□□□ 1.69
VPS28-212ENST00000530836 ARAP2Q8WZ64 1704 aa25.59■■□□□ 1.69
VPS28-212ENST00000530836 WTIPA6NIX2 430 aaPredicted RBP25.58■■□□□ 1.69
VPS28-212ENST00000530836 TAF5LO75529 589 aa25.58■■□□□ 1.69
VPS28-212ENST00000530836 MCCP23508 829 aa25.58■■□□□ 1.69
VPS28-212ENST00000530836 WASHC4Q2M389 1173 aa25.58■■□□□ 1.69
VPS28-212ENST00000530836 KIAA1211Q6ZU35 1233 aa25.58■■□□□ 1.69
VPS28-212ENST00000530836 EYA3Q99504 573 aa25.58■■□□□ 1.69
VPS28-212ENST00000530836 PPIP5K2O43314 1243 aa25.57■■□□□ 1.68
VPS28-212ENST00000530836 ARID4AP29374 1257 aaPredicted RBP25.57■■□□□ 1.68
VPS28-212ENST00000530836 KIAA2012Q0VF49 1180 aa25.57■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 89.7 ms