RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 KIF16BQ96L93 1317 aa26.27■■□□□ 1.8
VPS28-203ENST00000524521 TMEM88BA6NKF7 163 aa26.26■■□□□ 1.79
VPS28-203ENST00000524521 AGBL3Q8NEM8 1001 aa26.26■■□□□ 1.79
VPS28-203ENST00000524521 ZC3H15Q8WU90 426 aaKnown RBP26.26■■□□□ 1.79
VPS28-203ENST00000524521 ARHGAP45Q92619 1136 aa26.26■■□□□ 1.79
VPS28-203ENST00000524521 FBXW7Q969H0 707 aa26.26■■□□□ 1.79
VPS28-203ENST00000524521 PUS3Q9BZE2 481 aaKnown RBP26.26■■□□□ 1.79
VPS28-203ENST00000524521 BCAR3O75815 825 aa26.25■■□□□ 1.79
VPS28-203ENST00000524521 FMR1Q06787 632 aaKnown RBP eCLIP26.25■■□□□ 1.79
VPS28-203ENST00000524521 PGAP2Q9UHJ9 254 aa26.25■■□□□ 1.79
VPS28-203ENST00000524521 FRAT1Q92837 279 aaPredicted RBP26.24■■□□□ 1.79
VPS28-203ENST00000524521 TRAF5O00463 557 aa26.23■■□□□ 1.79
VPS28-203ENST00000524521 IPO8O15397 1037 aaKnown RBP26.23■■□□□ 1.79
VPS28-203ENST00000524521 EGFRP00533 1210 aa26.23■■□□□ 1.79
VPS28-203ENST00000524521 UBTFL1P0CB47 393 aaPredicted RBP26.23■■□□□ 1.79
VPS28-203ENST00000524521 GMLQ99445 158 aa26.22■■□□□ 1.79
VPS28-203ENST00000524521 GLIS2Q9BZE0 524 aaPredicted RBP26.22■■□□□ 1.79
VPS28-203ENST00000524521 MKRN1Q9UHC7 482 aaKnown RBP26.22■■□□□ 1.79
VPS28-203ENST00000524521 ZBED9Q6R2W3 1325 aa26.21■■□□□ 1.79
VPS28-203ENST00000524521 USP17L8P0C7I0 530 aa26.21■■□□□ 1.79
VPS28-203ENST00000524521 KIF4BQ2VIQ3 1234 aa26.21■■□□□ 1.79
VPS28-203ENST00000524521 DACT2Q5SW24 774 aa26.21■■□□□ 1.79
VPS28-203ENST00000524521 STRIP1Q5VSL9 837 aa26.21■■□□□ 1.79
VPS28-203ENST00000524521 TTLL5Q6EMB2 1281 aa26.21■■□□□ 1.79
VPS28-203ENST00000524521 C15orf52Q6ZUT6 534 aaKnown RBP26.21■■□□□ 1.79
VPS28-203ENST00000524521 MXD3Q9BW11 206 aa26.21■■□□□ 1.79
VPS28-203ENST00000524521 CD209Q9NNX6 404 aa26.21■■□□□ 1.79
VPS28-203ENST00000524521 RIPOR2Q9Y4F9 1068 aa26.21■■□□□ 1.79
VPS28-203ENST00000524521 IRS2Q9Y4H2 1338 aa26.2■■□□□ 1.79
VPS28-203ENST00000524521 CDC37L1Q7L3B6 337 aa26.2■■□□□ 1.78
VPS28-203ENST00000524521 JMYQ8N9B5 988 aa26.2■■□□□ 1.78
VPS28-203ENST00000524521 KLHDC4Q8TBB5 520 aa26.2■■□□□ 1.78
VPS28-203ENST00000524521 PSME4Q14997 1843 aa26.2■■□□□ 1.78
VPS28-203ENST00000524521 ZNF280AP59817 542 aaPredicted RBP26.19■■□□□ 1.78
VPS28-203ENST00000524521 GTF2IP78347 998 aa26.19■■□□□ 1.78
VPS28-203ENST00000524521 LRRC24Q50LG9 513 aa26.19■■□□□ 1.78
VPS28-203ENST00000524521 INTS3Q68E01 1043 aaKnown RBP26.19■■□□□ 1.78
VPS28-203ENST00000524521 ZNF804AQ7Z570 1209 aa26.19■■□□□ 1.78
VPS28-203ENST00000524521 MROH5Q6ZUA9 1318 aa26.18■■□□□ 1.78
VPS28-203ENST00000524521 ZNF609O15014 1411 aa26.18■■□□□ 1.78
VPS28-203ENST00000524521 UBE4AQ14139 1066 aa26.18■■□□□ 1.78
VPS28-203ENST00000524521 USP48Q86UV5 1035 aa26.18■■□□□ 1.78
VPS28-203ENST00000524521 ABT1Q9ULW3 272 aaKnown RBP26.18■■□□□ 1.78
VPS28-203ENST00000524521 HDAC5Q9UQL6 1122 aa26.18■■□□□ 1.78
VPS28-203ENST00000524521 A0A1B0GUL6 1792 aa26.18■■□□□ 1.78
VPS28-203ENST00000524521 TRIM27P14373 513 aa26.17■■□□□ 1.78
VPS28-203ENST00000524521 METTL24Q5JXM2 366 aa26.17■■□□□ 1.78
VPS28-203ENST00000524521 ATF7IPQ6VMQ6 1270 aa26.17■■□□□ 1.78
VPS28-203ENST00000524521 DCPSQ96C86 337 aaKnown RBP26.17■■□□□ 1.78
VPS28-203ENST00000524521 MEIS3Q99687 375 aa26.17■■□□□ 1.78
VPS28-203ENST00000524521 TNNQ9UQP3 1299 aa26.17■■□□□ 1.78
VPS28-203ENST00000524521 MYO3BQ8WXR4 1341 aa26.16■■□□□ 1.78
VPS28-203ENST00000524521 CST9Q5W186 159 aa26.16■■□□□ 1.78
VPS28-203ENST00000524521 CLUAP1Q96AJ1 413 aa26.16■■□□□ 1.78
VPS28-203ENST00000524521 MYOZ2Q9NPC6 264 aa26.16■■□□□ 1.78
VPS28-203ENST00000524521 LRRFIP2Q9Y608 721 aaKnown RBP26.16■■□□□ 1.78
VPS28-203ENST00000524521 SCARF1Q14162 830 aa26.15■■□□□ 1.78
VPS28-203ENST00000524521 OGFOD1Q8N543 542 aa26.15■■□□□ 1.78
VPS28-203ENST00000524521 CNTNAP1P78357 1384 aa26.15■■□□□ 1.78
VPS28-203ENST00000524521 CELF2O95319 508 aaKnown RBP26.14■■□□□ 1.78
VPS28-203ENST00000524521 IL1R1P14778 569 aa26.14■■□□□ 1.78
VPS28-203ENST00000524521 RFX5P48382 616 aaPredicted RBP26.14■■□□□ 1.78
VPS28-203ENST00000524521 DEFB115Q30KQ5 88 aa26.14■■□□□ 1.78
VPS28-203ENST00000524521 KRT26Q7Z3Y9 468 aa26.14■■□□□ 1.78
VPS28-203ENST00000524521 ZNF408Q9H9D4 720 aa26.14■■□□□ 1.78
VPS28-203ENST00000524521 ASTN2O75129 1339 aaPredicted RBP26.14■■□□□ 1.77
VPS28-203ENST00000524521 GNAI3P08754 354 aa26.13■■□□□ 1.77
VPS28-203ENST00000524521 GYG1P46976 350 aa26.13■■□□□ 1.77
VPS28-203ENST00000524521 ZKSCAN2Q63HK3 967 aa26.13■■□□□ 1.77
VPS28-203ENST00000524521 DLK2Q6UY11 383 aa26.13■■□□□ 1.77
VPS28-203ENST00000524521 GGA3Q9NZ52 723 aa26.13■■□□□ 1.77
VPS28-203ENST00000524521 PDE8BO95263 885 aa26.12■■□□□ 1.77
VPS28-203ENST00000524521 HIBADHP31937 336 aaKnown RBP26.12■■□□□ 1.77
VPS28-203ENST00000524521 PTPN12Q05209 780 aaKnown RBP26.12■■□□□ 1.77
VPS28-203ENST00000524521 KIAA0825Q8IV33 1275 aa26.12■■□□□ 1.77
VPS28-203ENST00000524521 FAM84BQ96KN1 310 aaPredicted RBP26.12■■□□□ 1.77
VPS28-203ENST00000524521 POLR2AP24928 1970 aaKnown RBP26.12■■□□□ 1.77
VPS28-203ENST00000524521 TRPM7Q96QT4 1865 aa26.12■■□□□ 1.77
VPS28-203ENST00000524521 RASSF10A6NK89 507 aa26.11■■□□□ 1.77
VPS28-203ENST00000524521 EYA2O00167 538 aa26.11■■□□□ 1.77
VPS28-203ENST00000524521 VEGFBP49765 207 aa26.11■■□□□ 1.77
VPS28-203ENST00000524521 ADM5C9JUS6 153 aa26.1■■□□□ 1.77
VPS28-203ENST00000524521 ANGEL2Q5VTE6 544 aaKnown RBP26.1■■□□□ 1.77
VPS28-203ENST00000524521 SULF1Q8IWU6 871 aa26.1■■□□□ 1.77
VPS28-203ENST00000524521 VGLL2Q8N8G2 317 aa26.1■■□□□ 1.77
VPS28-203ENST00000524521 HDAC9Q9UKV0 1011 aa26.1■■□□□ 1.77
VPS28-203ENST00000524521 JAG2Q9Y219 1238 aa26.1■■□□□ 1.77
VPS28-203ENST00000524521 ZNF646O15015 1829 aaPredicted RBP26.09■■□□□ 1.77
VPS28-203ENST00000524521 SASH1O94885 1247 aa26.09■■□□□ 1.77
VPS28-203ENST00000524521 MMP14P50281 582 aa26.09■■□□□ 1.77
VPS28-203ENST00000524521 SIL1Q9H173 461 aa26.09■■□□□ 1.77
VPS28-203ENST00000524521 NBPF9Q3BBW0 867 aa26.08■■□□□ 1.77
VPS28-203ENST00000524521 PAXIP1Q6ZW49 1069 aaPredicted RBP26.08■■□□□ 1.77
VPS28-203ENST00000524521 VPS37DQ86XT2 251 aa26.08■■□□□ 1.77
VPS28-203ENST00000524521 CERS5Q8N5B7 392 aa26.08■■□□□ 1.77
VPS28-203ENST00000524521 TDRD7Q8NHU6 1098 aaKnown RBP26.08■■□□□ 1.77
VPS28-203ENST00000524521 TLL2Q9Y6L7 1015 aa26.08■■□□□ 1.77
VPS28-203ENST00000524521 CAVIN4Q5BKX8 364 aa26.07■■□□□ 1.76
VPS28-203ENST00000524521 ATG9AQ7Z3C6 839 aa26.07■■□□□ 1.76
VPS28-203ENST00000524521 TMEM57Q8N5G2 664 aa26.07■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms