RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 TAF1DQ9H5J8 278 aaPredicted RBP10.26□□□□□ -0.77
SCN1A-207ENST00000507401 LAMB2P55268 1798 aa10.25□□□□□ -0.77
SCN1A-207ENST00000507401 IRS4O14654 1257 aaPredicted RBP10.25□□□□□ -0.77
SCN1A-207ENST00000507401 PCCAP05165 728 aaPredicted RBP10.25□□□□□ -0.77
SCN1A-207ENST00000507401 DPP8Q6V1X1 898 aaPredicted RBP10.25□□□□□ -0.77
SCN1A-207ENST00000507401 MPNDQ8N594 471 aa10.25□□□□□ -0.77
SCN1A-207ENST00000507401 MYD88Q99836 296 aa10.25□□□□□ -0.77
SCN1A-207ENST00000507401 CWC25Q9NXE8 425 aaPredicted RBP10.25□□□□□ -0.77
SCN1A-207ENST00000507401 HACL1Q9UJ83 578 aa10.25□□□□□ -0.77
SCN1A-207ENST00000507401 ZNF541Q9H0D2 1346 aa10.25□□□□□ -0.77
SCN1A-207ENST00000507401 PI4KAP2A4QPH2 592 aa10.24□□□□□ -0.77
SCN1A-207ENST00000507401 ARHGAP33O14559 1287 aa10.24□□□□□ -0.77
SCN1A-207ENST00000507401 EVI5O60447 810 aa10.24□□□□□ -0.77
SCN1A-207ENST00000507401 VAMP4O75379 141 aa10.24□□□□□ -0.77
SCN1A-207ENST00000507401 RPS8P62241 208 aaKnown RBP10.24□□□□□ -0.77
SCN1A-207ENST00000507401 NEXNQ0ZGT2 675 aa10.24□□□□□ -0.77
SCN1A-207ENST00000507401 LDHDQ86WU2 507 aa10.24□□□□□ -0.77
SCN1A-207ENST00000507401 NIM1KQ8IY84 436 aa10.24□□□□□ -0.77
SCN1A-207ENST00000507401 PI4KAP1Q8N8J0 262 aa10.24□□□□□ -0.77
SCN1A-207ENST00000507401 ZNRF3Q9ULT6 936 aa10.24□□□□□ -0.77
SCN1A-207ENST00000507401 MAP3K2Q9Y2U5 619 aa10.24□□□□□ -0.77
SCN1A-207ENST00000507401 CACNA1FO60840 1977 aa10.23□□□□□ -0.77
SCN1A-207ENST00000507401 PPIP5K2O43314 1243 aa10.23□□□□□ -0.77
SCN1A-207ENST00000507401 PDE8AO60658 829 aa10.23□□□□□ -0.77
SCN1A-207ENST00000507401 EPHX2P34913 555 aa10.23□□□□□ -0.77
SCN1A-207ENST00000507401 FOSBP53539 338 aa10.23□□□□□ -0.77
SCN1A-207ENST00000507401 KIAA2012Q0VF49 1180 aa10.23□□□□□ -0.77
SCN1A-207ENST00000507401 PPP4R3BQ5MIZ7 849 aa10.23□□□□□ -0.77
SCN1A-207ENST00000507401 FAM9BQ8IZU0 186 aa10.23□□□□□ -0.77
SCN1A-207ENST00000507401 KLRG1Q96E93 195 aa10.23□□□□□ -0.77
SCN1A-207ENST00000507401 DDX60Q8IY21 1712 aaKnown RBP10.23□□□□□ -0.77
SCN1A-207ENST00000507401 IGKV5-2P06315 115 aa10.22□□□□□ -0.77
SCN1A-207ENST00000507401 CCDC152Q4G0S7 254 aa10.22□□□□□ -0.77
SCN1A-207ENST00000507401 RTL5Q5HYW3 569 aaPredicted RBP10.22□□□□□ -0.77
SCN1A-207ENST00000507401 JMYQ8N9B5 988 aa10.22□□□□□ -0.77
SCN1A-207ENST00000507401 CELF1Q92879 486 aaKnown RBP10.22□□□□□ -0.77
SCN1A-207ENST00000507401 MYH16Q9H6N6 1097 aa10.22□□□□□ -0.77
SCN1A-207ENST00000507401 NSFL1CQ9UNZ2 370 aaKnown RBP10.22□□□□□ -0.77
SCN1A-207ENST00000507401 CDHR2Q9BYE9 1310 aa10.22□□□□□ -0.77
SCN1A-207ENST00000507401 ITGBL1O95965 494 aaPredicted RBP10.21□□□□□ -0.77
SCN1A-207ENST00000507401 LMOD1P29536 600 aaPredicted RBP10.21□□□□□ -0.77
SCN1A-207ENST00000507401 PSEN2P49810 448 aa10.21□□□□□ -0.77
SCN1A-207ENST00000507401 EXOSC9Q06265 439 aaKnown RBP10.21□□□□□ -0.77
SCN1A-207ENST00000507401 CXCL9Q07325 125 aa10.21□□□□□ -0.77
SCN1A-207ENST00000507401 TNIP1Q15025 636 aa10.21□□□□□ -0.77
SCN1A-207ENST00000507401 AOC3Q16853 763 aa10.21□□□□□ -0.77
SCN1A-207ENST00000507401 DMRTA1Q5VZB9 504 aa10.21□□□□□ -0.77
SCN1A-207ENST00000507401 USP50Q70EL3 339 aaPredicted RBP10.21□□□□□ -0.77
SCN1A-207ENST00000507401 G2E3Q7L622 706 aa10.21□□□□□ -0.77
SCN1A-207ENST00000507401 ZNF428Q96B54 188 aa10.21□□□□□ -0.77
SCN1A-207ENST00000507401 PODXL2Q9NZ53 605 aa10.21□□□□□ -0.77
SCN1A-207ENST00000507401 SALL2Q9Y467 1007 aaPredicted RBP10.21□□□□□ -0.77
SCN1A-207ENST00000507401 GJA3Q9Y6H8 435 aa10.21□□□□□ -0.77
SCN1A-207ENST00000507401 COL4A5P29400 1685 aa10.21□□□□□ -0.78
SCN1A-207ENST00000507401 TAF1P21675 1872 aa10.21□□□□□ -0.78
SCN1A-207ENST00000507401 NEURL1BA8MQ27 555 aa10.2□□□□□ -0.78
SCN1A-207ENST00000507401 H7C1W4 665 aa10.2□□□□□ -0.78
SCN1A-207ENST00000507401 SCNN1DP51172 638 aa10.2□□□□□ -0.78
SCN1A-207ENST00000507401 MAP3K9P80192 1104 aa10.2□□□□□ -0.78
SCN1A-207ENST00000507401 HTRA3P83110 453 aa10.2□□□□□ -0.78
SCN1A-207ENST00000507401 FLIIQ13045 1269 aa10.2□□□□□ -0.78
SCN1A-207ENST00000507401 WASHC4Q2M389 1173 aa10.2□□□□□ -0.78
SCN1A-207ENST00000507401 SLC51AQ86UW1 340 aa10.2□□□□□ -0.78
SCN1A-207ENST00000507401 PASKQ96RG2 1323 aa10.2□□□□□ -0.78
SCN1A-207ENST00000507401 EYA3Q99504 573 aa10.2□□□□□ -0.78
SCN1A-207ENST00000507401 LRRC37AA6NMS7 1700 aa10.19□□□□□ -0.78
SCN1A-207ENST00000507401 C6orf229H3BNL8 230 aa10.19□□□□□ -0.78
SCN1A-207ENST00000507401 GPSM2P81274 684 aa10.19□□□□□ -0.78
SCN1A-207ENST00000507401 FKBP5Q13451 457 aaPredicted RBP10.19□□□□□ -0.78
SCN1A-207ENST00000507401 GCKRQ14397 625 aa10.19□□□□□ -0.78
SCN1A-207ENST00000507401 EAPPQ56P03 285 aaPredicted RBP10.19□□□□□ -0.78
SCN1A-207ENST00000507401 CIAPIN1Q6FI81 312 aa10.19□□□□□ -0.78
SCN1A-207ENST00000507401 CNTROBQ8N137 903 aa10.19□□□□□ -0.78
SCN1A-207ENST00000507401 ZNF454Q8N9F8 522 aa10.19□□□□□ -0.78
SCN1A-207ENST00000507401 LINS1Q8NG48 757 aa10.19□□□□□ -0.78
SCN1A-207ENST00000507401 TTLL11Q8NHH1 800 aa10.19□□□□□ -0.78
SCN1A-207ENST00000507401 ZC3H12CQ9C0D7 883 aaKnown RBP10.19□□□□□ -0.78
SCN1A-207ENST00000507401 SEC31BQ9NQW1 1179 aa10.19□□□□□ -0.78
SCN1A-207ENST00000507401 GPRC5DQ9NZD1 345 aa10.19□□□□□ -0.78
SCN1A-207ENST00000507401 POLLQ9UGP5 575 aa10.19□□□□□ -0.78
SCN1A-207ENST00000507401 RTL9Q8NET4 1388 aa10.18□□□□□ -0.78
SCN1A-207ENST00000507401 ZNF521Q96K83 1311 aa10.18□□□□□ -0.78
SCN1A-207ENST00000507401 EPS15P42566 896 aa10.18□□□□□ -0.78
SCN1A-207ENST00000507401 CWF19L2Q2TBE0 894 aaKnown RBP10.18□□□□□ -0.78
SCN1A-207ENST00000507401 ANKRD18AQ8IVF6 992 aa10.18□□□□□ -0.78
SCN1A-207ENST00000507401 TBC1D16Q8TBP0 767 aa10.18□□□□□ -0.78
SCN1A-207ENST00000507401 DNAAF4Q8WXU2 420 aa10.18□□□□□ -0.78
SCN1A-207ENST00000507401 DPF2Q92785 391 aa10.18□□□□□ -0.78
SCN1A-207ENST00000507401 JARID2Q92833 1246 aaPredicted RBP10.18□□□□□ -0.78
SCN1A-207ENST00000507401 CDC5LQ99459 802 aaKnown RBP10.18□□□□□ -0.78
SCN1A-207ENST00000507401 PLA2G12BQ9BX93 195 aa10.18□□□□□ -0.78
SCN1A-207ENST00000507401 ADARB2Q9NS39 739 aaKnown RBP10.18□□□□□ -0.78
SCN1A-207ENST00000507401 PGAP2Q9UHJ9 254 aa10.18□□□□□ -0.78
SCN1A-207ENST00000507401 ADAMTSL1Q8N6G6 1762 aa10.18□□□□□ -0.78
SCN1A-207ENST00000507401 TMEM88BA6NKF7 163 aa10.17□□□□□ -0.78
SCN1A-207ENST00000507401 CSF1RP07333 972 aa10.17□□□□□ -0.78
SCN1A-207ENST00000507401 CTSWP56202 376 aa10.17□□□□□ -0.78
SCN1A-207ENST00000507401 ZC3H15Q8WU90 426 aaKnown RBP10.17□□□□□ -0.78
SCN1A-207ENST00000507401 BSDC1Q9NW68 430 aaPredicted RBP10.17□□□□□ -0.78
SCN1A-207ENST00000507401 ANKIB1Q9P2G1 1089 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms