RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 AKAP11Q9UKA4 1901 aa17.22■□□□□ 0.35
CUX1-209ENST00000487284 A0A1B0GUL7 405 aa17.22■□□□□ 0.35
CUX1-209ENST00000487284 TIMM10P62072 90 aa17.22■□□□□ 0.35
CUX1-209ENST00000487284 BECN1Q14457 450 aa17.22■□□□□ 0.35
CUX1-209ENST00000487284 PRPF40BQ6NWY9 871 aaKnown RBP17.22■□□□□ 0.35
CUX1-209ENST00000487284 CNKSR1Q969H4 720 aa17.22■□□□□ 0.35
CUX1-209ENST00000487284 ATP2B3Q16720 1220 aa17.21■□□□□ 0.35
CUX1-209ENST00000487284 TMC4Q7Z404 712 aa17.21■□□□□ 0.35
CUX1-209ENST00000487284 AKAP2Q9Y2D5 859 aa17.21■□□□□ 0.35
CUX1-209ENST00000487284 LTBP1Q14766 1721 aa17.21■□□□□ 0.35
CUX1-209ENST00000487284 WTIPA6NIX2 430 aaPredicted RBP17.2■□□□□ 0.34
CUX1-209ENST00000487284 EPB41L2O43491 1005 aaKnown RBP17.2■□□□□ 0.34
CUX1-209ENST00000487284 PUM3Q15397 648 aaKnown RBP17.2■□□□□ 0.34
CUX1-209ENST00000487284 OLFM4Q6UX06 510 aa17.2■□□□□ 0.34
CUX1-209ENST00000487284 NEUROD6Q96NK8 337 aa17.2■□□□□ 0.34
CUX1-209ENST00000487284 ATP6V0A2Q9Y487 856 aa17.2■□□□□ 0.34
CUX1-209ENST00000487284 RFX7Q2KHR2 1363 aa17.2■□□□□ 0.34
CUX1-209ENST00000487284 FGFR2P21802 821 aa17.19■□□□□ 0.34
CUX1-209ENST00000487284 SP8Q8IXZ3 490 aa17.19■□□□□ 0.34
CUX1-209ENST00000487284 ANKRD2Q9GZV1 360 aa17.19■□□□□ 0.34
CUX1-209ENST00000487284 BOLA2Q9H3K6 86 aa17.19■□□□□ 0.34
CUX1-209ENST00000487284 DAXXQ9UER7 740 aaPredicted RBP17.19■□□□□ 0.34
CUX1-209ENST00000487284 SGSM2O43147 1006 aa17.19■□□□□ 0.34
CUX1-209ENST00000487284 ADORA1P30542 326 aa17.19■□□□□ 0.34
CUX1-209ENST00000487284 GPSM2P81274 684 aa17.19■□□□□ 0.34
CUX1-209ENST00000487284 TTLL6Q8N841 843 aa17.19■□□□□ 0.34
CUX1-209ENST00000487284 NLGN2Q8NFZ4 835 aa17.19■□□□□ 0.34
CUX1-209ENST00000487284 LPIN2Q92539 896 aa17.19■□□□□ 0.34
CUX1-209ENST00000487284 ANKIB1Q9P2G1 1089 aa17.19■□□□□ 0.34
CUX1-209ENST00000487284 XDHP47989 1333 aa17.18■□□□□ 0.34
CUX1-209ENST00000487284 ERICH6Q7L0X2 663 aa17.18■□□□□ 0.34
CUX1-209ENST00000487284 HAUS7Q99871 368 aa17.18■□□□□ 0.34
CUX1-209ENST00000487284 TBC1D2Q9BYX2 928 aa17.18■□□□□ 0.34
CUX1-209ENST00000487284 IL25Q9H293 177 aa17.18■□□□□ 0.34
CUX1-209ENST00000487284 DIAPH3Q9NSV4 1193 aa17.18■□□□□ 0.34
CUX1-209ENST00000487284 ZNF219Q9P2Y4 722 aaPredicted RBP17.18■□□□□ 0.34
CUX1-209ENST00000487284 WWC3Q9ULE0 1092 aa17.18■□□□□ 0.34
CUX1-209ENST00000487284 NSFL1CQ9UNZ2 370 aaKnown RBP17.18■□□□□ 0.34
CUX1-209ENST00000487284 HIP1O00291 1037 aa17.17■□□□□ 0.34
CUX1-209ENST00000487284 SLC4A3P48751 1232 aa17.17■□□□□ 0.34
CUX1-209ENST00000487284 UBE4AQ14139 1066 aa17.17■□□□□ 0.34
CUX1-209ENST00000487284 XAGE2Q96GT9 111 aa17.17■□□□□ 0.34
CUX1-209ENST00000487284 FHDC1Q9C0D6 1143 aaPredicted RBP17.17■□□□□ 0.34
CUX1-209ENST00000487284 PIM2Q9P1W9 311 aa17.17■□□□□ 0.34
CUX1-209ENST00000487284 DUOX1Q9NRD9 1551 aa17.17■□□□□ 0.34
CUX1-209ENST00000487284 SLC5A1P13866 664 aa17.16■□□□□ 0.34
CUX1-209ENST00000487284 KCNJ4P48050 445 aa17.16■□□□□ 0.34
CUX1-209ENST00000487284 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.16■□□□□ 0.34
CUX1-209ENST00000487284 C7orf43Q8WVR3 580 aa17.16■□□□□ 0.34
CUX1-209ENST00000487284 RUFY2Q8WXA3 655 aa17.16■□□□□ 0.34
CUX1-209ENST00000487284 SNX21Q969T3 373 aa17.16■□□□□ 0.34
CUX1-209ENST00000487284 PODXL2Q9NZ53 605 aa17.16■□□□□ 0.34
CUX1-209ENST00000487284 ZNF804BA4D1E1 1349 aa17.16■□□□□ 0.34
CUX1-209ENST00000487284 MYO5AQ9Y4I1 1855 aaKnown RBP17.16■□□□□ 0.34
CUX1-209ENST00000487284 IFIT1P09914 478 aaKnown RBP17.15■□□□□ 0.34
CUX1-209ENST00000487284 ANO2Q9NQ90 1003 aa17.15■□□□□ 0.34
CUX1-209ENST00000487284 DOCK2Q92608 1830 aa17.15■□□□□ 0.34
CUX1-209ENST00000487284 C21orf2O43822 256 aa17.15■□□□□ 0.34
CUX1-209ENST00000487284 UFL1O94874 794 aa17.15■□□□□ 0.34
CUX1-209ENST00000487284 KLRK1P26718 216 aa17.15■□□□□ 0.34
CUX1-209ENST00000487284 GPR101Q96P66 508 aaPredicted RBP17.15■□□□□ 0.34
CUX1-209ENST00000487284 FSD1Q9BTV5 496 aa17.15■□□□□ 0.34
CUX1-209ENST00000487284 SNRKQ9NRH2 765 aa17.15■□□□□ 0.34
CUX1-209ENST00000487284 LEMD3Q9Y2U8 911 aa17.15■□□□□ 0.34
CUX1-209ENST00000487284 RAD50Q92878 1312 aa17.15■□□□□ 0.34
CUX1-209ENST00000487284 SNED1Q8TER0 1413 aa17.14■□□□□ 0.34
CUX1-209ENST00000487284 RABEP1Q15276 862 aa17.14■□□□□ 0.33
CUX1-209ENST00000487284 GORABQ5T7V8 394 aa17.14■□□□□ 0.33
CUX1-209ENST00000487284 CWC27Q6UX04 472 aaKnown RBP17.14■□□□□ 0.33
CUX1-209ENST00000487284 TICAM2Q86XR7 235 aa17.14■□□□□ 0.33
CUX1-209ENST00000487284 MPNDQ8N594 471 aa17.14■□□□□ 0.33
CUX1-209ENST00000487284 TBC1D16Q8TBP0 767 aa17.14■□□□□ 0.33
CUX1-209ENST00000487284 IL17RAQ96F46 866 aa17.14■□□□□ 0.33
CUX1-209ENST00000487284 TMX4Q9H1E5 349 aaPredicted RBP17.14■□□□□ 0.33
CUX1-209ENST00000487284 GGA1Q9UJY5 639 aa17.14■□□□□ 0.33
CUX1-209ENST00000487284 ATP2B4P23634 1241 aa17.13■□□□□ 0.33
CUX1-209ENST00000487284 DALRD3Q5D0E6 543 aaKnown RBP17.13■□□□□ 0.33
CUX1-209ENST00000487284 DPP8Q6V1X1 898 aaPredicted RBP17.13■□□□□ 0.33
CUX1-209ENST00000487284 POLLQ9UGP5 575 aa17.13■□□□□ 0.33
CUX1-209ENST00000487284 MED23Q9ULK4 1368 aa17.12■□□□□ 0.33
CUX1-209ENST00000487284 IRS2Q9Y4H2 1338 aa17.12■□□□□ 0.33
CUX1-209ENST00000487284 C6orf229H3BNL8 230 aa17.12■□□□□ 0.33
CUX1-209ENST00000487284 MCCP23508 829 aa17.12■□□□□ 0.33
CUX1-209ENST00000487284 PHKA1P46020 1223 aa17.12■□□□□ 0.33
CUX1-209ENST00000487284 ANAPC15P60006 121 aa17.12■□□□□ 0.33
CUX1-209ENST00000487284 NMIQ13287 307 aaPredicted RBP17.12■□□□□ 0.33
CUX1-209ENST00000487284 TXNRD3Q86VQ6 643 aa17.12■□□□□ 0.33
CUX1-209ENST00000487284 EDC3Q96F86 508 aaKnown RBP17.12■□□□□ 0.33
CUX1-209ENST00000487284 DNAJC2Q99543 621 aaKnown RBP17.12■□□□□ 0.33
CUX1-209ENST00000487284 LSG1Q9H089 658 aaKnown RBP17.12■□□□□ 0.33
CUX1-209ENST00000487284 MYH13Q9UKX3 1938 aa17.12■□□□□ 0.33
CUX1-209ENST00000487284 ARFGEF1Q9Y6D6 1849 aa17.12■□□□□ 0.33
CUX1-209ENST00000487284 GYG1P46976 350 aa17.11■□□□□ 0.33
CUX1-209ENST00000487284 CCDC158Q5M9N0 1113 aa17.11■□□□□ 0.33
CUX1-209ENST00000487284 TTC39AQ5SRH9 613 aa17.11■□□□□ 0.33
CUX1-209ENST00000487284 CCDC102BQ68D86 513 aa17.11■□□□□ 0.33
CUX1-209ENST00000487284 CC2D2BQ6DHV5 1058 aa17.11■□□□□ 0.33
CUX1-209ENST00000487284 HSCBQ8IWL3 235 aa17.11■□□□□ 0.33
CUX1-209ENST00000487284 KBTBD3Q8NAB2 608 aa17.11■□□□□ 0.33
CUX1-209ENST00000487284 SYT17Q9BSW7 474 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms