RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 L2HGDHQ9H9P8 463 aa7.11□□□□□ -1.27
HERC4-209ENST00000473533 DACH1Q9UI36 760 aa7.11□□□□□ -1.27
HERC4-209ENST00000473533 SLC3A2P08195 630 aaKnown RBP7.1□□□□□ -1.27
HERC4-209ENST00000473533 CCZ1BP86790 482 aa7.1□□□□□ -1.27
HERC4-209ENST00000473533 CCZ1P86791 482 aaPredicted RBP7.1□□□□□ -1.27
HERC4-209ENST00000473533 SCRN1Q12765 414 aa7.1□□□□□ -1.27
HERC4-209ENST00000473533 JAKMIP3Q5VZ66 844 aa7.1□□□□□ -1.27
HERC4-209ENST00000473533 AOPEPQ8N6M6 819 aa7.1□□□□□ -1.27
HERC4-209ENST00000473533 USHBP1Q8N6Y0 703 aa7.1□□□□□ -1.27
HERC4-209ENST00000473533 MNS1Q8NEH6 495 aa7.1□□□□□ -1.27
HERC4-209ENST00000473533 ENGASEQ8NFI3 743 aa7.1□□□□□ -1.27
HERC4-209ENST00000473533 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.1□□□□□ -1.273e-7■■■□□ 16.3
HERC4-209ENST00000473533 KIAA1468Q9P260 1216 aa7.1□□□□□ -1.27
HERC4-209ENST00000473533 SIPA1L3O60292 1781 aaPredicted RBP7.1□□□□□ -1.27
HERC4-209ENST00000473533 ABCC12Q96J65 1359 aa7.1□□□□□ -1.27
HERC4-209ENST00000473533 KIF13AQ9H1H9 1805 aa7.1□□□□□ -1.27
HERC4-209ENST00000473533 JAK2O60674 1132 aa7.1□□□□□ -1.27
HERC4-209ENST00000473533 SMC2O95347 1197 aa7.1□□□□□ -1.27
HERC4-209ENST00000473533 OLFM4Q6UX06 510 aa7.1□□□□□ -1.27
HERC4-209ENST00000473533 ZNF589Q86UQ0 364 aaPredicted RBP7.1□□□□□ -1.27
HERC4-209ENST00000473533 DHX40Q8IX18 779 aaKnown RBP7.1□□□□□ -1.27
HERC4-209ENST00000473533 DDX11Q96FC9 970 aa7.1□□□□□ -1.27
HERC4-209ENST00000473533 SIL1Q9H173 461 aa7.1□□□□□ -1.27
HERC4-209ENST00000473533 FBXO3Q9UK99 471 aa7.1□□□□□ -1.27
HERC4-209ENST00000473533 CYP21A2P08686 494 aa7.1□□□□□ -1.27
HERC4-209ENST00000473533 IL15P40933 162 aaPredicted RBP7.1□□□□□ -1.27
HERC4-209ENST00000473533 EVCP57679 992 aa7.1□□□□□ -1.27
HERC4-209ENST00000473533 TERF2Q15554 542 aa7.1□□□□□ -1.27
HERC4-209ENST00000473533 CCDC144BQ3MJ40 725 aa7.1□□□□□ -1.27
HERC4-209ENST00000473533 TMCO3Q6UWJ1 677 aa7.1□□□□□ -1.27
HERC4-209ENST00000473533 ANKRD13DQ6ZTN6 518 aa7.1□□□□□ -1.27
HERC4-209ENST00000473533 C11orf57Q6ZUT1 292 aaPredicted RBP7.1□□□□□ -1.27
HERC4-209ENST00000473533 HOMER1Q86YM7 354 aa7.1□□□□□ -1.27
HERC4-209ENST00000473533 CCDC144CPQ8IYA2 1237 aa7.1□□□□□ -1.27
HERC4-209ENST00000473533 TTC5Q8N0Z6 440 aa7.1□□□□□ -1.27
HERC4-209ENST00000473533 UBXN4Q92575 508 aa7.1□□□□□ -1.27
HERC4-209ENST00000473533 C8orf76Q96K31 380 aa7.1□□□□□ -1.27
HERC4-209ENST00000473533 DNAJC2Q99543 621 aaKnown RBP7.1□□□□□ -1.27
HERC4-209ENST00000473533 ZNF215Q9UL58 517 aaPredicted RBP7.1□□□□□ -1.27
HERC4-209ENST00000473533 V9GYY5 206 aaPredicted RBP7.1□□□□□ -1.27
HERC4-209ENST00000473533 KDM4FA0A1W2PPD8 638 aa7.09□□□□□ -1.27
HERC4-209ENST00000473533 CPLX1O14810 134 aa7.09□□□□□ -1.27
HERC4-209ENST00000473533 EXOSC10Q01780 885 aaKnown RBP7.09□□□□□ -1.27
HERC4-209ENST00000473533 IMMTQ16891 758 aaKnown RBP7.09□□□□□ -1.27
HERC4-209ENST00000473533 FMR1NBQ8N0W7 255 aaPredicted RBP7.09□□□□□ -1.27
HERC4-209ENST00000473533 RAPGEF4Q8WZA2 1011 aa7.09□□□□□ -1.27
HERC4-209ENST00000473533 ATG3Q9NT62 314 aa7.09□□□□□ -1.27
HERC4-209ENST00000473533 ZNF609O15014 1411 aa7.09□□□□□ -1.27
HERC4-209ENST00000473533 CARMIL3Q8ND23 1372 aa7.09□□□□□ -1.27
HERC4-209ENST00000473533 SALL1Q9NSC2 1324 aa7.09□□□□□ -1.27
HERC4-209ENST00000473533 SPTLC2O15270 562 aa7.09□□□□□ -1.27
HERC4-209ENST00000473533 SNRPA1P09661 255 aaKnown RBP7.09□□□□□ -1.27
HERC4-209ENST00000473533 ADD1P35611 737 aaKnown RBP7.09□□□□□ -1.27
HERC4-209ENST00000473533 TUBB2AQ13885 445 aa7.09□□□□□ -1.27
HERC4-209ENST00000473533 ZMYM1Q5SVZ6 1142 aa7.09□□□□□ -1.27
HERC4-209ENST00000473533 ELOA2Q8IYF1 753 aaPredicted RBP7.09□□□□□ -1.27
HERC4-209ENST00000473533 DDX54Q8TDD1 881 aaKnown RBP7.09□□□□□ -1.27
HERC4-209ENST00000473533 TCEANC2Q96MN5 208 aa7.09□□□□□ -1.27
HERC4-209ENST00000473533 USP28Q96RU2 1077 aa7.09□□□□□ -1.27
HERC4-209ENST00000473533 MYD88Q99836 296 aa7.09□□□□□ -1.27
HERC4-209ENST00000473533 TUBB2BQ9BVA1 445 aa7.09□□□□□ -1.27
HERC4-209ENST00000473533 PAG1Q9NWQ8 432 aa7.09□□□□□ -1.27
HERC4-209ENST00000473533 DBNLQ9UJU6 430 aaKnown RBP7.09□□□□□ -1.27
HERC4-209ENST00000473533 FAM177BA6PVY3 158 aa7.09□□□□□ -1.28
HERC4-209ENST00000473533 KCNQ3O43525 872 aa7.09□□□□□ -1.28
HERC4-209ENST00000473533 ANXA1P04083 346 aa7.09□□□□□ -1.28
HERC4-209ENST00000473533 CMA1P23946 247 aa7.09□□□□□ -1.28
HERC4-209ENST00000473533 AIMP1Q12904 312 aaKnown RBP7.09□□□□□ -1.28
HERC4-209ENST00000473533 ZNF790Q6PG37 636 aa7.09□□□□□ -1.28
HERC4-209ENST00000473533 KAZALD1Q96I82 304 aa7.09□□□□□ -1.28
HERC4-209ENST00000473533 MPHOSPH8Q99549 860 aa7.09□□□□□ -1.28
HERC4-209ENST00000473533 FAM53CQ9NYF3 392 aa7.09□□□□□ -1.28
HERC4-209ENST00000473533 DNAI1Q9UI46 699 aa7.09□□□□□ -1.28
HERC4-209ENST00000473533 POTEB2H3BUK9 544 aa7.08□□□□□ -1.28
HERC4-209ENST00000473533 RNF113AO15541 343 aaKnown RBP7.08□□□□□ -1.28
HERC4-209ENST00000473533 TATP17735 454 aaPredicted RBP7.08□□□□□ -1.28
HERC4-209ENST00000473533 ETF1P62495 437 aaKnown RBP7.08□□□□□ -1.28
HERC4-209ENST00000473533 TFCP2Q12800 502 aa7.08□□□□□ -1.28
HERC4-209ENST00000473533 TMC6Q7Z403 805 aa7.08□□□□□ -1.28
HERC4-209ENST00000473533 RALYLQ86SE5 291 aaKnown RBP7.08□□□□□ -1.28
HERC4-209ENST00000473533 ARHGEF25Q86VW2 580 aa7.08□□□□□ -1.28
HERC4-209ENST00000473533 FMNL2Q96PY5 1086 aa7.08□□□□□ -1.28
HERC4-209ENST00000473533 TLR7Q9NYK1 1049 aaKnown RBP7.08□□□□□ -1.28
HERC4-209ENST00000473533 NAP1L2Q9ULW6 460 aaPredicted RBP7.08□□□□□ -1.28
HERC4-209ENST00000473533 AKAP2Q9Y2D5 859 aa7.08□□□□□ -1.28
HERC4-209ENST00000473533 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP7.08□□□□□ -1.28
HERC4-209ENST00000473533 MAP3K15Q6ZN16 1313 aa7.08□□□□□ -1.28
HERC4-209ENST00000473533 EFCAB8A8MWE9 144 aa7.08□□□□□ -1.28
HERC4-209ENST00000473533 CIAO1O76071 339 aa7.08□□□□□ -1.28
HERC4-209ENST00000473533 IGKV5-2P06315 115 aa7.08□□□□□ -1.28
HERC4-209ENST00000473533 CDK11BP21127 795 aaKnown RBP7.08□□□□□ -1.28
HERC4-209ENST00000473533 CEBPZQ03701 1054 aaKnown RBP7.08□□□□□ -1.28
HERC4-209ENST00000473533 PTPN12Q05209 780 aaKnown RBP7.08□□□□□ -1.28
HERC4-209ENST00000473533 CT47A1Q5JQC4 288 aaPredicted RBP7.08□□□□□ -1.28
HERC4-209ENST00000473533 TXLNBQ8N3L3 684 aa7.08□□□□□ -1.28
HERC4-209ENST00000473533 LINC00301Q8NCQ3 95 aa7.08□□□□□ -1.28
HERC4-209ENST00000473533 XAGE3Q8WTP9 111 aa7.08□□□□□ -1.28
HERC4-209ENST00000473533 PPP1R13BQ96KQ4 1090 aa7.08□□□□□ -1.28
HERC4-209ENST00000473533 SLC52A2Q9HAB3 445 aa7.08□□□□□ -1.28
HERC4-209ENST00000473533 PCDHA7Q9UN72 937 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 140.9 ms