RNA–Protein interactions for RNA: ENST00000470531.5

CHD3-208, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 3,744 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-208ENST00000470531 DBNLQ9UJU6 430 aaKnown RBP12.41□□□□□ -0.42
CHD3-208ENST00000470531 UHRF1BP1LA0JNW5 1464 aa12.41□□□□□ -0.42
CHD3-208ENST00000470531 CYP21A2P08686 494 aa12.4□□□□□ -0.42
CHD3-208ENST00000470531 UBASH3AP57075 661 aa12.4□□□□□ -0.42
CHD3-208ENST00000470531 CCDC144BQ3MJ40 725 aa12.4□□□□□ -0.42
CHD3-208ENST00000470531 KRT28Q7Z3Y7 464 aa12.4□□□□□ -0.42
CHD3-208ENST00000470531 TRIM34Q9BYJ4 488 aa12.4□□□□□ -0.42
CHD3-208ENST00000470531 PPLO60437 1756 aa12.4□□□□□ -0.42
CHD3-208ENST00000470531 MCM6Q14566 821 aa12.4□□□□□ -0.42
CHD3-208ENST00000470531 LRRC24Q50LG9 513 aa12.4□□□□□ -0.42
CHD3-208ENST00000470531 ZSWIM6Q9HCJ5 1215 aa12.4□□□□□ -0.42
CHD3-208ENST00000470531 MAPK8IP1Q9UQF2 711 aa12.4□□□□□ -0.42
CHD3-208ENST00000470531 ERICH2A1L162 156 aa12.4□□□□□ -0.42
CHD3-208ENST00000470531 SNAP23O00161 211 aa12.4□□□□□ -0.42
CHD3-208ENST00000470531 PRC1O43663 620 aa12.4□□□□□ -0.42
CHD3-208ENST00000470531 KIF20AO95235 890 aa12.4□□□□□ -0.42
CHD3-208ENST00000470531 SCRN1Q12765 414 aa12.4□□□□□ -0.42
CHD3-208ENST00000470531 TNNI3KQ59H18 835 aa12.4□□□□□ -0.42
CHD3-208ENST00000470531 PUS3Q9BZE2 481 aaKnown RBP12.4□□□□□ -0.42
CHD3-208ENST00000470531 FPGT-TNNI3KV9GXZ4 949 aa12.4□□□□□ -0.42
CHD3-208ENST00000470531 MAP2P11137 1827 aaKnown RBP12.4□□□□□ -0.42
CHD3-208ENST00000470531 GIGYF1O75420 1035 aaPredicted RBP12.39□□□□□ -0.43
CHD3-208ENST00000470531 MIGA1Q8NAN2 632 aa12.39□□□□□ -0.43
CHD3-208ENST00000470531 MRPS27Q92552 414 aaKnown RBP12.39□□□□□ -0.43
CHD3-208ENST00000470531 AIDAQ96BJ3 306 aa12.39□□□□□ -0.43
CHD3-208ENST00000470531 RABEP2Q9H5N1 569 aa12.39□□□□□ -0.43
CHD3-208ENST00000470531 ST7Q9NRC1 585 aa12.39□□□□□ -0.43
CHD3-208ENST00000470531 PUF60Q9UHX1 559 aaKnown RBP12.39□□□□□ -0.43
CHD3-208ENST00000470531 TTC41PQ6P2S7 1318 aa12.39□□□□□ -0.43
CHD3-208ENST00000470531 ENOX2Q16206 610 aaKnown RBP12.39□□□□□ -0.43
CHD3-208ENST00000470531 AKAP4Q5JQC9 854 aa12.39□□□□□ -0.43
CHD3-208ENST00000470531 INCENPQ9NQS7 918 aa12.39□□□□□ -0.43
CHD3-208ENST00000470531 ARGLU1Q9NWB6 273 aaPredicted RBP12.39□□□□□ -0.43
CHD3-208ENST00000470531 STAP2Q9UGK3 403 aa12.39□□□□□ -0.43
CHD3-208ENST00000470531 TNRQ92752 1358 aa12.39□□□□□ -0.43
CHD3-208ENST00000470531 IFIT3O14879 490 aaKnown RBP12.39□□□□□ -0.43
CHD3-208ENST00000470531 ADD1P35611 737 aaKnown RBP12.39□□□□□ -0.43
CHD3-208ENST00000470531 SYKP43405 635 aa12.39□□□□□ -0.43
CHD3-208ENST00000470531 NAP1L1P55209 391 aaKnown RBP12.39□□□□□ -0.43
CHD3-208ENST00000470531 SLC9C2Q5TAH2 1124 aa12.39□□□□□ -0.43
CHD3-208ENST00000470531 ZNF790Q6PG37 636 aa12.39□□□□□ -0.43
CHD3-208ENST00000470531 ALG1Q9BT22 464 aa12.39□□□□□ -0.43
CHD3-208ENST00000470531 XPO4Q9C0E2 1151 aaKnown RBP12.39□□□□□ -0.43
CHD3-208ENST00000470531 PGBD1Q96JS3 809 aa12.38□□□□□ -0.43
CHD3-208ENST00000470531 CLIC6Q96NY7 704 aa12.38□□□□□ -0.43
CHD3-208ENST00000470531 PLIN2Q99541 437 aa12.38□□□□□ -0.43
CHD3-208ENST00000470531 CLSTN2Q9H4D0 955 aa12.38□□□□□ -0.43
CHD3-208ENST00000470531 SPTLC2O15270 562 aa12.38□□□□□ -0.43
CHD3-208ENST00000470531 TMCO3Q6UWJ1 677 aa12.38□□□□□ -0.43
CHD3-208ENST00000470531 TTLL7Q6ZT98 887 aa12.38□□□□□ -0.43
CHD3-208ENST00000470531 DHX32Q7L7V1 743 aaKnown RBP12.38□□□□□ -0.43
CHD3-208ENST00000470531 B4E1Z4 1266 aa12.38□□□□□ -0.43
CHD3-208ENST00000470531 CCDC102AQ96A19 550 aa12.38□□□□□ -0.43
CHD3-208ENST00000470531 DESI2Q9BSY9 194 aa12.38□□□□□ -0.43
CHD3-208ENST00000470531 SRRTQ9BXP5 876 aaKnown RBP12.38□□□□□ -0.43
CHD3-208ENST00000470531 TBC1D2BQ9UPU7 963 aa12.38□□□□□ -0.43
CHD3-208ENST00000470531 A0A1B0GUL7 405 aa12.37□□□□□ -0.43
CHD3-208ENST00000470531 GCKRQ14397 625 aa12.37□□□□□ -0.43
CHD3-208ENST00000470531 GDAP1L1Q96MZ0 367 aa12.37□□□□□ -0.43
CHD3-208ENST00000470531 LRP2BPQ9P2M1 347 aa12.37□□□□□ -0.43
CHD3-208ENST00000470531 CLIC4Q9Y696 253 aa12.37□□□□□ -0.43
CHD3-208ENST00000470531 KIAA0232Q92628 1395 aa12.37□□□□□ -0.43
CHD3-208ENST00000470531 DPCR1Q3MIW9 517 aa12.37□□□□□ -0.43
CHD3-208ENST00000470531 FUCA2Q9BTY2 467 aa12.37□□□□□ -0.43
CHD3-208ENST00000470531 TAF5LO75529 589 aa12.37□□□□□ -0.43
CHD3-208ENST00000470531 METAP2P50579 478 aaKnown RBP eCLIP12.37□□□□□ -0.43
CHD3-208ENST00000470531 NDUFA8P51970 172 aa12.37□□□□□ -0.43
CHD3-208ENST00000470531 ANKLE2Q86XL3 938 aa12.37□□□□□ -0.43
CHD3-208ENST00000470531 UIMC1Q96RL1 719 aa12.37□□□□□ -0.43
CHD3-208ENST00000470531 DDX21Q9NR30 783 aaKnown RBP eCLIP12.37□□□□□ -0.43
CHD3-208ENST00000470531 GOLGA8AA7E2F4 631 aa12.36□□□□□ -0.43
CHD3-208ENST00000470531 IFIT5Q13325 482 aaKnown RBP12.36□□□□□ -0.43
CHD3-208ENST00000470531 TMEM67Q5HYA8 995 aa12.36□□□□□ -0.43
CHD3-208ENST00000470531 PTPRMP28827 1452 aa12.36□□□□□ -0.43
CHD3-208ENST00000470531 RANBP6O60518 1105 aaKnown RBP12.36□□□□□ -0.43
CHD3-208ENST00000470531 PRDM1O75626 825 aa12.36□□□□□ -0.43
CHD3-208ENST00000470531 CLSTN1O94985 981 aa12.36□□□□□ -0.43
CHD3-208ENST00000470531 MYCNP04198 464 aaPredicted RBP12.36□□□□□ -0.43
CHD3-208ENST00000470531 AMOTQ4VCS5 1084 aa12.36□□□□□ -0.43
CHD3-208ENST00000470531 KCNH5Q8NCM2 988 aa12.36□□□□□ -0.43
CHD3-208ENST00000470531 CCDC12Q8WUD4 166 aaPredicted RBP12.36□□□□□ -0.43
CHD3-208ENST00000470531 ANKRD7Q92527 254 aa12.36□□□□□ -0.43
CHD3-208ENST00000470531 MAP4K1Q92918 833 aa12.36□□□□□ -0.43
CHD3-208ENST00000470531 CARD6Q9BX69 1037 aa12.36□□□□□ -0.43
CHD3-208ENST00000470531 NAPBQ9H115 298 aa12.36□□□□□ -0.43
CHD3-208ENST00000470531 KCNJ14Q9UNX9 436 aa12.36□□□□□ -0.43
CHD3-208ENST00000470531 CCDC66A2RUB6 948 aa12.36□□□□□ -0.43
CHD3-208ENST00000470531 SNRPA1P09661 255 aaKnown RBP12.36□□□□□ -0.43
CHD3-208ENST00000470531 ATP1A3P13637 1013 aa12.36□□□□□ -0.43
CHD3-208ENST00000470531 ADKP55263 362 aaKnown RBP12.36□□□□□ -0.43
CHD3-208ENST00000470531 NECTIN1Q15223 517 aa12.36□□□□□ -0.43
CHD3-208ENST00000470531 SYNE4Q8N205 404 aa12.36□□□□□ -0.43
CHD3-208ENST00000470531 CCDC24Q8N4L8 307 aa12.36□□□□□ -0.43
CHD3-208ENST00000470531 IP6K1Q92551 441 aa12.36□□□□□ -0.43
CHD3-208ENST00000470531 TTC14Q96N46 770 aa12.36□□□□□ -0.43
CHD3-208ENST00000470531 MPHOSPH8Q99549 860 aa12.36□□□□□ -0.43
CHD3-208ENST00000470531 RAI14Q9P0K7 980 aa12.36□□□□□ -0.43
CHD3-208ENST00000470531 SALL3Q9BXA9 1300 aa12.35□□□□□ -0.43
CHD3-208ENST00000470531 PNOCQ13519 176 aa12.35□□□□□ -0.43
CHD3-208ENST00000470531 KIF4BQ2VIQ3 1234 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms