RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 CLSTN2Q9H4D0 955 aa21.66■■□□□ 1.06
CCDC88B-204ENST00000463837 TMCO5BA8MYB1 307 aa21.66■■□□□ 1.06
CCDC88B-204ENST00000463837 CRACR2BQ8N4Y2 399 aaPredicted RBP21.66■■□□□ 1.06
CCDC88B-204ENST00000463837 BBXQ8WY36 941 aaPredicted RBP21.66■■□□□ 1.06
CCDC88B-204ENST00000463837 PTPDC1A2A3K4 754 aa21.65■■□□□ 1.06
CCDC88B-204ENST00000463837 KRT86O43790 486 aa21.65■■□□□ 1.06
CCDC88B-204ENST00000463837 RTN1Q16799 776 aa21.65■■□□□ 1.06
CCDC88B-204ENST00000463837 NBPF11Q86T75 865 aa21.65■■□□□ 1.06
CCDC88B-204ENST00000463837 CETN1Q12798 172 aa21.65■■□□□ 1.06
CCDC88B-204ENST00000463837 A0A1W2PP64 1363 aa21.65■■□□□ 1.06
CCDC88B-204ENST00000463837 ANKIB1Q9P2G1 1089 aa21.65■■□□□ 1.06
CCDC88B-204ENST00000463837 NPATQ14207 1427 aa21.65■■□□□ 1.06
CCDC88B-204ENST00000463837 ZNF500O60304 480 aaPredicted RBP21.65■■□□□ 1.06
CCDC88B-204ENST00000463837 AKAP4Q5JQC9 854 aa21.65■■□□□ 1.06
CCDC88B-204ENST00000463837 FLT4P35916 1363 aa21.65■■□□□ 1.06
CCDC88B-204ENST00000463837 LLPHQ9BRT6 129 aaKnown RBP21.64■■□□□ 1.06
CCDC88B-204ENST00000463837 BABAM1Q9NWV8 329 aa21.64■■□□□ 1.06
CCDC88B-204ENST00000463837 ABCC1P33527 1531 aa21.64■■□□□ 1.06
CCDC88B-204ENST00000463837 PSMA7O14818 248 aa21.64■■□□□ 1.06
CCDC88B-204ENST00000463837 PRC1O43663 620 aa21.64■■□□□ 1.06
CCDC88B-204ENST00000463837 IMPACTQ9P2X3 320 aa21.64■■□□□ 1.05
CCDC88B-204ENST00000463837 GTF2A1P52655 376 aaPredicted RBP21.64■■□□□ 1.05
CCDC88B-204ENST00000463837 MYL5Q02045 173 aa21.63■■□□□ 1.05
CCDC88B-204ENST00000463837 HDXQ7Z353 690 aa21.63■■□□□ 1.05
CCDC88B-204ENST00000463837 KAT14Q9H8E8 782 aa21.63■■□□□ 1.05
CCDC88B-204ENST00000463837 PAG1Q9NWQ8 432 aa21.63■■□□□ 1.05
CCDC88B-204ENST00000463837 CEBPAP49715 358 aaPredicted RBP21.63■■□□□ 1.05
CCDC88B-204ENST00000463837 GCC2Q8IWJ2 1684 aa21.63■■□□□ 1.05
CCDC88B-204ENST00000463837 MARCKSP29966 332 aaPredicted RBP21.63■■□□□ 1.05
CCDC88B-204ENST00000463837 HSPA4P34932 840 aa21.63■■□□□ 1.05
CCDC88B-204ENST00000463837 CCDC96Q2M329 555 aa21.63■■□□□ 1.05
CCDC88B-204ENST00000463837 ELP1O95163 1332 aa21.63■■□□□ 1.05
CCDC88B-204ENST00000463837 RIOK3O14730 519 aaKnown RBP21.63■■□□□ 1.05
CCDC88B-204ENST00000463837 CCDC172P0C7W6 258 aa21.63■■□□□ 1.05
CCDC88B-204ENST00000463837 IDEP14735 1019 aa21.63■■□□□ 1.05
CCDC88B-204ENST00000463837 JARID2Q92833 1246 aaPredicted RBP21.63■■□□□ 1.05
CCDC88B-204ENST00000463837 RPGRQ92834 1020 aaKnown RBP21.63■■□□□ 1.05
CCDC88B-204ENST00000463837 ATP5J2-PTCD1G3V325 749 aa21.63■■□□□ 1.05
CCDC88B-204ENST00000463837 ZBTB9Q96C00 473 aa21.63■■□□□ 1.05
CCDC88B-204ENST00000463837 ZBTB3Q9H5J0 574 aa21.63■■□□□ 1.05
CCDC88B-204ENST00000463837 STAT6P42226 847 aa21.62■■□□□ 1.05
CCDC88B-204ENST00000463837 AFMP43652 599 aa21.62■■□□□ 1.05
CCDC88B-204ENST00000463837 ZNF75DP51815 510 aa21.62■■□□□ 1.05
CCDC88B-204ENST00000463837 STXBP4Q6ZWJ1 553 aa21.62■■□□□ 1.05
CCDC88B-204ENST00000463837 ESR2Q92731 530 aa21.62■■□□□ 1.05
CCDC88B-204ENST00000463837 SPATA31E1Q6ZUB1 1445 aa21.62■■□□□ 1.05
CCDC88B-204ENST00000463837 RNF113AO15541 343 aaKnown RBP21.62■■□□□ 1.05
CCDC88B-204ENST00000463837 DDX12PQ92771 950 aa21.62■■□□□ 1.05
CCDC88B-204ENST00000463837 MYO1BO43795 1136 aa21.62■■□□□ 1.05
CCDC88B-204ENST00000463837 RPS6KB1P23443 525 aa21.62■■□□□ 1.05
CCDC88B-204ENST00000463837 MTHFSDQ2M296 383 aaKnown RBP21.62■■□□□ 1.05
CCDC88B-204ENST00000463837 CNGA4Q8IV77 575 aa21.62■■□□□ 1.05
CCDC88B-204ENST00000463837 TRIM75PA6NK02 468 aa21.62■■□□□ 1.05
CCDC88B-204ENST00000463837 NOP2P46087 812 aaKnown RBP21.62■■□□□ 1.05
CCDC88B-204ENST00000463837 PHACTR3Q96KR7 559 aa21.61■■□□□ 1.05
CCDC88B-204ENST00000463837 SLTMQ9NWH9 1034 aaKnown RBP eCLIP21.61■■□□□ 1.05
CCDC88B-204ENST00000463837 MAP3K5Q99683 1374 aa21.61■■□□□ 1.05
CCDC88B-204ENST00000463837 RIMS2Q9UQ26 1411 aa21.61■■□□□ 1.05
CCDC88B-204ENST00000463837 ATP2C2O75185 946 aa21.61■■□□□ 1.05
CCDC88B-204ENST00000463837 PRPF4BQ13523 1007 aaKnown RBP21.61■■□□□ 1.05
CCDC88B-204ENST00000463837 SELENOOQ9BVL4 669 aa21.61■■□□□ 1.05
CCDC88B-204ENST00000463837 EBAG9O00559 213 aa21.61■■□□□ 1.05
CCDC88B-204ENST00000463837 NSRP1Q9H0G5 558 aaKnown RBP21.61■■□□□ 1.05
CCDC88B-204ENST00000463837 KIF5AQ12840 1032 aa21.6■■□□□ 1.05
CCDC88B-204ENST00000463837 CTNNBL1Q8WYA6 563 aaPredicted RBP21.6■■□□□ 1.05
CCDC88B-204ENST00000463837 CDC5LQ99459 802 aaKnown RBP21.6■■□□□ 1.05
CCDC88B-204ENST00000463837 XAGE3Q8WTP9 111 aa21.6■■□□□ 1.05
CCDC88B-204ENST00000463837 SSH2Q76I76 1423 aa21.6■■□□□ 1.05
CCDC88B-204ENST00000463837 BRD1O95696 1058 aa21.6■■□□□ 1.05
CCDC88B-204ENST00000463837 CCDC155Q8N6L0 562 aa21.6■■□□□ 1.05
CCDC88B-204ENST00000463837 HELLSQ9NRZ9 838 aa21.6■■□□□ 1.05
CCDC88B-204ENST00000463837 SNX14Q9Y5W7 946 aa21.6■■□□□ 1.05
CCDC88B-204ENST00000463837 MAST1Q9Y2H9 1570 aa21.6■■□□□ 1.05
CCDC88B-204ENST00000463837 LDHCP07864 332 aa21.59■■□□□ 1.05
CCDC88B-204ENST00000463837 UBE4AQ14139 1066 aa21.59■■□□□ 1.05
CCDC88B-204ENST00000463837 BAG1Q99933 345 aaPredicted RBP21.59■■□□□ 1.05
CCDC88B-204ENST00000463837 GNAQP50148 359 aa21.59■■□□□ 1.05
CCDC88B-204ENST00000463837 VPS18Q9P253 973 aa21.59■■□□□ 1.05
CCDC88B-204ENST00000463837 TSPY2A6NKD2 308 aa21.59■■□□□ 1.05
CCDC88B-204ENST00000463837 CALM1P0DP23 149 aa21.59■■□□□ 1.05
CCDC88B-204ENST00000463837 CALM2P0DP24 149 aa21.59■■□□□ 1.05
CCDC88B-204ENST00000463837 CALM3P0DP25 149 aa21.59■■□□□ 1.05
CCDC88B-204ENST00000463837 CUL5Q93034 780 aa21.59■■□□□ 1.05
CCDC88B-204ENST00000463837 EHMT1Q9H9B1 1298 aa21.59■■□□□ 1.05
CCDC88B-204ENST00000463837 RTL9Q8NET4 1388 aa21.58■■□□□ 1.05
CCDC88B-204ENST00000463837 APOBRQ0VD83 1088 aa21.58■■□□□ 1.05
CCDC88B-204ENST00000463837 TRIM35Q9UPQ4 493 aa21.58■■□□□ 1.05
CCDC88B-204ENST00000463837 SGSM2O43147 1006 aa21.58■■□□□ 1.05
CCDC88B-204ENST00000463837 EVCP57679 992 aa21.58■■□□□ 1.05
CCDC88B-204ENST00000463837 ATP2B3Q16720 1220 aa21.58■■□□□ 1.05
CCDC88B-204ENST00000463837 SPTY2D1Q68D10 685 aaPredicted RBP21.58■■□□□ 1.05
CCDC88B-204ENST00000463837 MACROD2A1Z1Q3 448 aa21.58■■□□□ 1.04
CCDC88B-204ENST00000463837 ARFGAP2Q8N6H7 521 aa21.58■■□□□ 1.04
CCDC88B-204ENST00000463837 DRC1Q96MC2 740 aa21.58■■□□□ 1.04
CCDC88B-204ENST00000463837 ASXL2Q76L83 1435 aa21.58■■□□□ 1.04
CCDC88B-204ENST00000463837 TRAPPC8Q9Y2L5 1435 aa21.58■■□□□ 1.04
CCDC88B-204ENST00000463837 ZNF518AQ6AHZ1 1483 aa21.57■■□□□ 1.04
CCDC88B-204ENST00000463837 BICDL2A1A5D9 508 aa21.57■■□□□ 1.04
CCDC88B-204ENST00000463837 TTC31Q49AM3 519 aaPredicted RBP21.57■■□□□ 1.04
CCDC88B-204ENST00000463837 TCERG1LQ5VWI1 586 aa21.57■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 110.1 ms