RNA–Protein interactions for RNA: ENST00000458038.5

CPNE1-220, Transcript of copine 1, humanhuman

TSL 3

Gene CPNE1, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-220ENST00000458038 PLA2G12BQ9BX93 195 aa27.55■■■□□ 2
CPNE1-220ENST00000458038 LEMD3Q9Y2U8 911 aa27.55■■■□□ 2
CPNE1-220ENST00000458038 CCDC85CA6NKD9 419 aa27.54■■■□□ 2
CPNE1-220ENST00000458038 IGHMBP2P38935 993 aaKnown RBP27.54■■■□□ 2
CPNE1-220ENST00000458038 UBE3BQ7Z3V4 1068 aa27.54■■■□□ 2
CPNE1-220ENST00000458038 MYO3BQ8WXR4 1341 aa27.54■■■□□ 2
CPNE1-220ENST00000458038 COA1Q9GZY4 146 aa27.54■■■□□ 2
CPNE1-220ENST00000458038 MYH16Q9H6N6 1097 aa27.54■■■□□ 2
CPNE1-220ENST00000458038 OGFOD1Q8N543 542 aa27.53■■■□□ 2
CPNE1-220ENST00000458038 ASTN2O75129 1339 aaPredicted RBP27.52■■■□□ 2
CPNE1-220ENST00000458038 SLC10A3P09131 477 aa27.52■■■□□ 2
CPNE1-220ENST00000458038 KIF23Q02241 960 aaPredicted RBP27.52■■■□□ 2
CPNE1-220ENST00000458038 GCKRQ14397 625 aa27.52■■■□□ 2
CPNE1-220ENST00000458038 STRIP1Q5VSL9 837 aa27.52■■■□□ 2
CPNE1-220ENST00000458038 G2E3Q7L622 706 aa27.52■■■□□ 2
CPNE1-220ENST00000458038 MCOLN1Q9GZU1 580 aa27.52■■■□□ 2
CPNE1-220ENST00000458038 ANKRD2Q9GZV1 360 aa27.52■■■□□ 2
CPNE1-220ENST00000458038 SPEF2Q9C093 1822 aa27.52■■■□□ 2
CPNE1-220ENST00000458038 RGS19P49795 217 aa27.51■■□□□ 1.99
CPNE1-220ENST00000458038 FLIIQ13045 1269 aa27.51■■□□□ 1.99
CPNE1-220ENST00000458038 CCDC184Q52MB2 194 aa27.51■■□□□ 1.99
CPNE1-220ENST00000458038 DACT2Q5SW24 774 aa27.5■■□□□ 1.99
CPNE1-220ENST00000458038 LINS1Q8NG48 757 aa27.5■■□□□ 1.99
CPNE1-220ENST00000458038 FKBP5Q13451 457 aaPredicted RBP27.49■■□□□ 1.99
CPNE1-220ENST00000458038 DNAAF4Q8WXU2 420 aa27.49■■□□□ 1.99
CPNE1-220ENST00000458038 MPHOSPH8Q99549 860 aa27.49■■□□□ 1.99
CPNE1-220ENST00000458038 PAPPA2Q9BXP8 1791 aa27.48■■□□□ 1.99
CPNE1-220ENST00000458038 WTIPA6NIX2 430 aaPredicted RBP27.48■■□□□ 1.99
CPNE1-220ENST00000458038 CSF1RP07333 972 aa27.48■■□□□ 1.99
CPNE1-220ENST00000458038 ITGA6P23229 1130 aa27.48■■□□□ 1.99
CPNE1-220ENST00000458038 DGKZQ13574 1117 aa27.48■■□□□ 1.99
CPNE1-220ENST00000458038 WDR63Q8IWG1 891 aa27.48■■□□□ 1.99
CPNE1-220ENST00000458038 CSRNP1Q96S65 589 aa27.47■■□□□ 1.99
CPNE1-220ENST00000458038 RNF186Q9NXI6 227 aa27.47■■□□□ 1.99
CPNE1-220ENST00000458038 ZNF804BA4D1E1 1349 aa27.46■■□□□ 1.99
CPNE1-220ENST00000458038 CASP7P55210 303 aa27.46■■□□□ 1.99
CPNE1-220ENST00000458038 MLLT1Q03111 559 aaPredicted RBP27.46■■□□□ 1.99
CPNE1-220ENST00000458038 TRPA1O75762 1119 aa27.45■■□□□ 1.98
CPNE1-220ENST00000458038 FAM161AQ3B820 660 aa27.45■■□□□ 1.98
CPNE1-220ENST00000458038 TTLL5Q6EMB2 1281 aa27.45■■□□□ 1.98
CPNE1-220ENST00000458038 FANCIQ9NVI1 1328 aa27.44■■□□□ 1.98
CPNE1-220ENST00000458038 VAMP4O75379 141 aa27.44■■□□□ 1.98
CPNE1-220ENST00000458038 NF2P35240 595 aa27.44■■□□□ 1.98
CPNE1-220ENST00000458038 NBPF9Q3BBW0 867 aa27.44■■□□□ 1.98
CPNE1-220ENST00000458038 RASAL3Q86YV0 1011 aa27.44■■□□□ 1.98
CPNE1-220ENST00000458038 MRS2Q9HD23 443 aa27.44■■□□□ 1.98
CPNE1-220ENST00000458038 WNT10BO00744 389 aa27.43■■□□□ 1.98
CPNE1-220ENST00000458038 TXNRD3Q86VQ6 643 aa27.43■■□□□ 1.98
CPNE1-220ENST00000458038 FBXW7Q969H0 707 aa27.43■■□□□ 1.98
CPNE1-220ENST00000458038 HDAC9Q9UKV0 1011 aa27.43■■□□□ 1.98
CPNE1-220ENST00000458038 ZNF646O15015 1829 aaPredicted RBP27.43■■□□□ 1.98
CPNE1-220ENST00000458038 ANKRD18BA2A2Z9 1011 aa27.42■■□□□ 1.98
CPNE1-220ENST00000458038 KCNJ4P48050 445 aa27.42■■□□□ 1.98
CPNE1-220ENST00000458038 CHRNDQ07001 517 aa27.4■■□□□ 1.98
CPNE1-220ENST00000458038 MXD3Q9BW11 206 aa27.4■■□□□ 1.98
CPNE1-220ENST00000458038 ANP32CO43423 234 aa27.39■■□□□ 1.98
CPNE1-220ENST00000458038 IFIT5Q13325 482 aaKnown RBP27.39■■□□□ 1.98
CPNE1-220ENST00000458038 C15orf52Q6ZUT6 534 aaKnown RBP27.39■■□□□ 1.98
CPNE1-220ENST00000458038 APOBEC3FQ8IUX4 373 aaKnown RBP27.39■■□□□ 1.98
CPNE1-220ENST00000458038 GTF2IP78347 998 aa27.37■■□□□ 1.97
CPNE1-220ENST00000458038 EXOSC9Q06265 439 aaKnown RBP27.37■■□□□ 1.97
CPNE1-220ENST00000458038 TTLL12Q14166 644 aaPredicted RBP27.37■■□□□ 1.97
CPNE1-220ENST00000458038 CD209Q9NNX6 404 aa27.37■■□□□ 1.97
CPNE1-220ENST00000458038 UBE2Q2LH0YL09 131 aa27.36■■□□□ 1.97
CPNE1-220ENST00000458038 KIAA0825Q8IV33 1275 aa27.36■■□□□ 1.97
CPNE1-220ENST00000458038 FOXO4P98177 505 aa27.35■■□□□ 1.97
CPNE1-220ENST00000458038 BEND3Q5T5X7 828 aa27.35■■□□□ 1.97
CPNE1-220ENST00000458038 ARMC9Q7Z3E5 817 aa27.35■■□□□ 1.97
CPNE1-220ENST00000458038 ZBED3Q96IU2 234 aaPredicted RBP27.35■■□□□ 1.97
CPNE1-220ENST00000458038 KLRK1P26718 216 aa27.34■■□□□ 1.97
CPNE1-220ENST00000458038 PRAMEF18Q5VWM3 479 aa27.34■■□□□ 1.97
CPNE1-220ENST00000458038 MOB2Q70IA6 237 aa27.34■■□□□ 1.97
CPNE1-220ENST00000458038 CTU1Q7Z7A3 348 aaKnown RBP27.34■■□□□ 1.97
CPNE1-220ENST00000458038 SCAF8Q9UPN6 1271 aaKnown RBP27.34■■□□□ 1.97
CPNE1-220ENST00000458038 SASH1O94885 1247 aa27.33■■□□□ 1.97
CPNE1-220ENST00000458038 TM4SF4P48230 202 aa27.33■■□□□ 1.97
CPNE1-220ENST00000458038 ZNF804AQ7Z570 1209 aa27.33■■□□□ 1.97
CPNE1-220ENST00000458038 MTMR14Q8NCE2 650 aa27.33■■□□□ 1.97
CPNE1-220ENST00000458038 SALL2Q9Y467 1007 aaPredicted RBP27.33■■□□□ 1.97
CPNE1-220ENST00000458038 ZEB1P37275 1124 aaPredicted RBP27.32■■□□□ 1.96
CPNE1-220ENST00000458038 FKBP1AP62942 108 aaKnown RBP27.32■■□□□ 1.96
CPNE1-220ENST00000458038 DLGAP5Q15398 846 aa27.32■■□□□ 1.96
CPNE1-220ENST00000458038 CHMP3Q9Y3E7 222 aa27.32■■□□□ 1.96
CPNE1-220ENST00000458038 COL1A1P02452 1464 aaPredicted RBP27.32■■□□□ 1.96
CPNE1-220ENST00000458038 F6X3S4 739 aa27.31■■□□□ 1.96
CPNE1-220ENST00000458038 IL1R1P14778 569 aa27.31■■□□□ 1.96
CPNE1-220ENST00000458038 CCDC57Q2TAC2 916 aa27.31■■□□□ 1.96
CPNE1-220ENST00000458038 IRS2Q9Y4H2 1338 aa27.31■■□□□ 1.96
CPNE1-220ENST00000458038 GRM8O00222 908 aa27.3■■□□□ 1.96
CPNE1-220ENST00000458038 TAF5LO75529 589 aa27.3■■□□□ 1.96
CPNE1-220ENST00000458038 SREBF2Q12772 1141 aa27.3■■□□□ 1.96
CPNE1-220ENST00000458038 PKN2Q16513 984 aaKnown RBP27.3■■□□□ 1.96
CPNE1-220ENST00000458038 NOM1Q5C9Z4 860 aaKnown RBP27.3■■□□□ 1.96
CPNE1-220ENST00000458038 LMBR1LQ6UX01 489 aa27.3■■□□□ 1.96
CPNE1-220ENST00000458038 PDE4DIPQ5VU43 2346 aa27.29■■□□□ 1.96
CPNE1-220ENST00000458038 ALDH1L1O75891 902 aa27.29■■□□□ 1.96
CPNE1-220ENST00000458038 TAF7LQ5H9L4 462 aa27.29■■□□□ 1.96
CPNE1-220ENST00000458038 LDHAL6AQ6ZMR3 332 aa27.29■■□□□ 1.96
CPNE1-220ENST00000458038 HELBQ8NG08 1087 aaPredicted RBP27.29■■□□□ 1.96
CPNE1-220ENST00000458038 PPP2R3BQ9Y5P8 575 aa27.29■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms