RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 ZIC5Q96T25 663 aa18.54■□□□□ 0.56
SDC1-204ENST00000429035 BSDC1Q9NW68 430 aaPredicted RBP18.54■□□□□ 0.56
SDC1-204ENST00000429035 ZNF609O15014 1411 aa18.54■□□□□ 0.56
SDC1-204ENST00000429035 PAPPA2Q9BXP8 1791 aa18.53■□□□□ 0.56
SDC1-204ENST00000429035 USP17L8P0C7I0 530 aa18.53■□□□□ 0.56
SDC1-204ENST00000429035 ZNF157P51786 506 aaPredicted RBP18.53■□□□□ 0.56
SDC1-204ENST00000429035 DNAAF4Q8WXU2 420 aa18.53■□□□□ 0.56
SDC1-204ENST00000429035 MXD3Q9BW11 206 aa18.53■□□□□ 0.56
SDC1-204ENST00000429035 MYOZ2Q9NPC6 264 aa18.53■□□□□ 0.56
SDC1-204ENST00000429035 SCAF8Q9UPN6 1271 aaKnown RBP18.53■□□□□ 0.56
SDC1-204ENST00000429035 CCDC85CA6NKD9 419 aa18.52■□□□□ 0.56
SDC1-204ENST00000429035 ITGA6P23229 1130 aa18.52■□□□□ 0.56
SDC1-204ENST00000429035 KCNJ4P48050 445 aa18.52■□□□□ 0.56
SDC1-204ENST00000429035 ZNF280AP59817 542 aaPredicted RBP18.52■□□□□ 0.56
SDC1-204ENST00000429035 GCKRQ14397 625 aa18.52■□□□□ 0.56
SDC1-204ENST00000429035 PODNQ7Z5L7 613 aa18.52■□□□□ 0.56
SDC1-204ENST00000429035 MPHOSPH8Q99549 860 aa18.52■□□□□ 0.56
SDC1-204ENST00000429035 CHMP3Q9Y3E7 222 aa18.52■□□□□ 0.56
SDC1-204ENST00000429035 H7C1W4 665 aa18.51■□□□□ 0.55
SDC1-204ENST00000429035 EXOSC9Q06265 439 aaKnown RBP18.5■□□□□ 0.55
SDC1-204ENST00000429035 FAM155AB1AL88 458 aaPredicted RBP18.49■□□□□ 0.55
SDC1-204ENST00000429035 KLRK1P26718 216 aa18.49■□□□□ 0.55
SDC1-204ENST00000429035 KIF23Q02241 960 aaPredicted RBP18.49■□□□□ 0.55
SDC1-204ENST00000429035 LINS1Q8NG48 757 aa18.49■□□□□ 0.55
SDC1-204ENST00000429035 CCDC102AQ96A19 550 aa18.49■□□□□ 0.55
SDC1-204ENST00000429035 GMLQ99445 158 aa18.49■□□□□ 0.55
SDC1-204ENST00000429035 COA1Q9GZY4 146 aa18.49■□□□□ 0.55
SDC1-204ENST00000429035 ZNF804BA4D1E1 1349 aa18.49■□□□□ 0.55
SDC1-204ENST00000429035 F6X3S4 739 aa18.48■□□□□ 0.55
SDC1-204ENST00000429035 SLC10A3P09131 477 aa18.48■□□□□ 0.55
SDC1-204ENST00000429035 TTLL12Q14166 644 aaPredicted RBP18.48■□□□□ 0.55
SDC1-204ENST00000429035 DACT2Q5SW24 774 aa18.48■□□□□ 0.55
SDC1-204ENST00000429035 TXNRD3Q86VQ6 643 aa18.48■□□□□ 0.55
SDC1-204ENST00000429035 OGFOD1Q8N543 542 aa18.48■□□□□ 0.55
SDC1-204ENST00000429035 PLA2G12BQ9BX93 195 aa18.48■□□□□ 0.55
SDC1-204ENST00000429035 ANKRD2Q9GZV1 360 aa18.48■□□□□ 0.55
SDC1-204ENST00000429035 LEMD3Q9Y2U8 911 aa18.48■□□□□ 0.55
SDC1-204ENST00000429035 MYO3BQ8WXR4 1341 aa18.48■□□□□ 0.55
SDC1-204ENST00000429035 PITPNM2Q9BZ72 1349 aa18.48■□□□□ 0.55
SDC1-204ENST00000429035 ANKRD18BA2A2Z9 1011 aa18.47■□□□□ 0.55
SDC1-204ENST00000429035 VAMP4O75379 141 aa18.47■□□□□ 0.55
SDC1-204ENST00000429035 SASH1O94885 1247 aa18.47■□□□□ 0.55
SDC1-204ENST00000429035 CASP7P55210 303 aa18.47■□□□□ 0.55
SDC1-204ENST00000429035 DGKZQ13574 1117 aa18.47■□□□□ 0.55
SDC1-204ENST00000429035 NBPF9Q3BBW0 867 aa18.47■□□□□ 0.55
SDC1-204ENST00000429035 FAM9BQ8IZU0 186 aa18.47■□□□□ 0.55
SDC1-204ENST00000429035 MCOLN1Q9GZU1 580 aa18.47■□□□□ 0.55
SDC1-204ENST00000429035 ZNF316A6NFI3 1004 aaPredicted RBP18.46■□□□□ 0.55
SDC1-204ENST00000429035 ZEB1P37275 1124 aaPredicted RBP18.46■□□□□ 0.55
SDC1-204ENST00000429035 CHRNDQ07001 517 aa18.46■□□□□ 0.55
SDC1-204ENST00000429035 STRIP1Q5VSL9 837 aa18.46■□□□□ 0.55
SDC1-204ENST00000429035 PRAMEF18Q5VWM3 479 aa18.46■□□□□ 0.55
SDC1-204ENST00000429035 RASAL3Q86YV0 1011 aa18.46■□□□□ 0.55
SDC1-204ENST00000429035 KIAA0825Q8IV33 1275 aa18.46■□□□□ 0.55
SDC1-204ENST00000429035 WDR63Q8IWG1 891 aa18.46■□□□□ 0.55
SDC1-204ENST00000429035 ECM29Q5VYK3 1845 aa18.45■□□□□ 0.54
SDC1-204ENST00000429035 GTF2IP78347 998 aa18.45■□□□□ 0.54
SDC1-204ENST00000429035 TAF7LQ5H9L4 462 aa18.45■□□□□ 0.54
SDC1-204ENST00000429035 MOB2Q70IA6 237 aa18.45■□□□□ 0.54
SDC1-204ENST00000429035 TRPA1O75762 1119 aa18.44■□□□□ 0.54
SDC1-204ENST00000429035 IFIT5Q13325 482 aaKnown RBP18.44■□□□□ 0.54
SDC1-204ENST00000429035 NCBP3Q53F19 620 aaKnown RBP18.44■□□□□ 0.54
SDC1-204ENST00000429035 TTLL5Q6EMB2 1281 aa18.44■□□□□ 0.54
SDC1-204ENST00000429035 HELBQ8NG08 1087 aaPredicted RBP18.44■□□□□ 0.54
SDC1-204ENST00000429035 HDAC9Q9UKV0 1011 aa18.44■□□□□ 0.54
SDC1-204ENST00000429035 SNAP23O00161 211 aa18.43■□□□□ 0.54
SDC1-204ENST00000429035 WNT10BO00744 389 aa18.43■□□□□ 0.54
SDC1-204ENST00000429035 TAF5LO75529 589 aa18.43■□□□□ 0.54
SDC1-204ENST00000429035 CSF1RP07333 972 aa18.43■□□□□ 0.54
SDC1-204ENST00000429035 NF2P35240 595 aa18.43■□□□□ 0.54
SDC1-204ENST00000429035 SPINK5Q9NQ38 1064 aaPredicted RBP18.43■□□□□ 0.54
SDC1-204ENST00000429035 PLIN1O60240 522 aa18.42■□□□□ 0.54
SDC1-204ENST00000429035 FKBP1BP68106 108 aa18.42■□□□□ 0.54
SDC1-204ENST00000429035 SLC4A10Q6U841 1118 aa18.42■□□□□ 0.54
SDC1-204ENST00000429035 RNF186Q9NXI6 227 aa18.42■□□□□ 0.54
SDC1-204ENST00000429035 SAGE1Q9NXZ1 904 aa18.42■□□□□ 0.54
SDC1-204ENST00000429035 UBE2Q2LH0YL09 131 aa18.41■□□□□ 0.54
SDC1-204ENST00000429035 MKRN3Q13064 507 aaKnown RBP18.41■□□□□ 0.54
SDC1-204ENST00000429035 PRKG1Q13976 671 aa18.41■□□□□ 0.54
SDC1-204ENST00000429035 BEND3Q5T5X7 828 aa18.41■□□□□ 0.54
SDC1-204ENST00000429035 CD209Q9NNX6 404 aa18.41■□□□□ 0.54
SDC1-204ENST00000429035 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.41■□□□□ 0.54
SDC1-204ENST00000429035 JAG2Q9Y219 1238 aa18.41■□□□□ 0.54
SDC1-204ENST00000429035 F8W031 263 aaPredicted RBP18.4■□□□□ 0.54
SDC1-204ENST00000429035 GRM8O00222 908 aa18.4■□□□□ 0.54
SDC1-204ENST00000429035 FOXO4P98177 505 aa18.4■□□□□ 0.54
SDC1-204ENST00000429035 CCDC57Q2TAC2 916 aa18.4■□□□□ 0.54
SDC1-204ENST00000429035 LMBR1LQ6UX01 489 aa18.4■□□□□ 0.54
SDC1-204ENST00000429035 APOBEC3FQ8IUX4 373 aaKnown RBP18.4■□□□□ 0.54
SDC1-204ENST00000429035 ZNF594Q96JF6 807 aaPredicted RBP18.4■□□□□ 0.54
SDC1-204ENST00000429035 CSRNP1Q96S65 589 aa18.4■□□□□ 0.54
SDC1-204ENST00000429035 CNNM1Q9NRU3 951 aa18.4■□□□□ 0.54
SDC1-204ENST00000429035 C9orf78Q9NZ63 289 aaPredicted RBP18.4■□□□□ 0.54
SDC1-204ENST00000429035 ZNF804AQ7Z570 1209 aa18.39■□□□□ 0.53
SDC1-204ENST00000429035 ARAP2Q8WZ64 1704 aa18.38■□□□□ 0.53
SDC1-204ENST00000429035 EPHA10Q5JZY3 1008 aa18.38■□□□□ 0.53
SDC1-204ENST00000429035 MLLT1Q03111 559 aaPredicted RBP18.37■□□□□ 0.53
SDC1-204ENST00000429035 DLGAP5Q15398 846 aa18.37■□□□□ 0.53
SDC1-204ENST00000429035 LDHAL6AQ6ZMR3 332 aa18.37■□□□□ 0.53
SDC1-204ENST00000429035 ARMC9Q7Z3E5 817 aa18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms