RNA–Protein interactions for RNA: ENST00000368020.5

USF1-202, Transcript of upstream transcription factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USF1, Length 1,717 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-202ENST00000368020 LRRC24Q50LG9 513 aa16.68■□□□□ 0.26
USF1-202ENST00000368020 GORABQ5T7V8 394 aa16.68■□□□□ 0.26
USF1-202ENST00000368020 FLAD1Q8NFF5 587 aa16.68■□□□□ 0.26
USF1-202ENST00000368020 ARHGEF1Q92888 912 aaKnown RBP16.68■□□□□ 0.26
USF1-202ENST00000368020 ZNF652Q9Y2D9 606 aa16.68■□□□□ 0.26
USF1-202ENST00000368020 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.67■□□□□ 0.26
USF1-202ENST00000368020 GOLIM4O00461 696 aa16.67■□□□□ 0.26
USF1-202ENST00000368020 PHF14O94880 888 aa16.67■□□□□ 0.26
USF1-202ENST00000368020 ZMYM1Q5SVZ6 1142 aa16.67■□□□□ 0.26
USF1-202ENST00000368020 CAVIN1Q6NZI2 390 aaKnown RBP16.67■□□□□ 0.26
USF1-202ENST00000368020 DDX46Q7L014 1031 aaKnown RBP16.67■□□□□ 0.26
USF1-202ENST00000368020 DEFB132Q7Z7B7 95 aa16.67■□□□□ 0.26
USF1-202ENST00000368020 ANKRD18BA2A2Z9 1011 aa16.67■□□□□ 0.26
USF1-202ENST00000368020 ZPR1O75312 459 aa16.67■□□□□ 0.26
USF1-202ENST00000368020 CTSWP56202 376 aa16.67■□□□□ 0.26
USF1-202ENST00000368020 TIMM10P62072 90 aa16.67■□□□□ 0.26
USF1-202ENST00000368020 HLFQ16534 295 aa16.67■□□□□ 0.26
USF1-202ENST00000368020 ZSCAN23Q3MJ62 389 aa16.67■□□□□ 0.26
USF1-202ENST00000368020 TTC39AQ5SRH9 613 aa16.67■□□□□ 0.26
USF1-202ENST00000368020 AMIGO3Q86WK7 504 aa16.67■□□□□ 0.26
USF1-202ENST00000368020 EDC3Q96F86 508 aaKnown RBP16.67■□□□□ 0.26
USF1-202ENST00000368020 FAM89AQ96GI7 184 aa16.67■□□□□ 0.26
USF1-202ENST00000368020 NEK1Q96PY6 1258 aa16.67■□□□□ 0.26
USF1-202ENST00000368020 BCORQ6W2J9 1755 aa16.67■□□□□ 0.26
USF1-202ENST00000368020 TCHHQ07283 1943 aa16.66■□□□□ 0.26
USF1-202ENST00000368020 RNF113AO15541 343 aaKnown RBP16.66■□□□□ 0.26
USF1-202ENST00000368020 PDE8AO60658 829 aa16.66■□□□□ 0.26
USF1-202ENST00000368020 SYT1P21579 422 aa16.66■□□□□ 0.26
USF1-202ENST00000368020 RFC4P35249 363 aa16.66■□□□□ 0.26
USF1-202ENST00000368020 CCDC83Q8IWF9 413 aa16.66■□□□□ 0.26
USF1-202ENST00000368020 ZNF34Q8IZ26 560 aa16.66■□□□□ 0.26
USF1-202ENST00000368020 UPF1Q92900 1129 aaKnown RBP eCLIP16.66■□□□□ 0.26
USF1-202ENST00000368020 ZNF594Q96JF6 807 aaPredicted RBP16.66■□□□□ 0.26
USF1-202ENST00000368020 ZNF512BQ96KM6 892 aaPredicted RBP16.66■□□□□ 0.26
USF1-202ENST00000368020 TFCP2L1Q9NZI6 479 aa16.66■□□□□ 0.26
USF1-202ENST00000368020 F13A1P00488 732 aa16.65■□□□□ 0.26
USF1-202ENST00000368020 GJB2P29033 226 aa16.65■□□□□ 0.26
USF1-202ENST00000368020 ME3Q16798 604 aa16.65■□□□□ 0.26
USF1-202ENST00000368020 ZNF827Q17R98 1081 aa16.65■□□□□ 0.26
USF1-202ENST00000368020 FAM43AQ8N2R8 423 aa16.65■□□□□ 0.26
USF1-202ENST00000368020 LRP5O75197 1615 aa16.65■□□□□ 0.26
USF1-202ENST00000368020 LAMB2P55268 1798 aa16.65■□□□□ 0.26
USF1-202ENST00000368020 SCN7AQ01118 1682 aa16.65■□□□□ 0.26
USF1-202ENST00000368020 C4AP0C0L4 1744 aa16.65■□□□□ 0.26
USF1-202ENST00000368020 ARAP2Q8WZ64 1704 aa16.65■□□□□ 0.26
USF1-202ENST00000368020 TTLL11Q8NHH1 800 aa16.65■□□□□ 0.26
USF1-202ENST00000368020 TRMT112Q9UI30 125 aaKnown RBP16.65■□□□□ 0.26
USF1-202ENST00000368020 LAMA4Q16363 1823 aa16.64■□□□□ 0.25
USF1-202ENST00000368020 IRS4O14654 1257 aaPredicted RBP16.64■□□□□ 0.25
USF1-202ENST00000368020 CPA1P15085 419 aa16.64■□□□□ 0.25
USF1-202ENST00000368020 ZSCAN25Q6NSZ9 544 aa16.64■□□□□ 0.25
USF1-202ENST00000368020 GPT2Q8TD30 523 aa16.64■□□□□ 0.25
USF1-202ENST00000368020 XAGE2Q96GT9 111 aa16.64■□□□□ 0.25
USF1-202ENST00000368020 PUS3Q9BZE2 481 aaKnown RBP16.64■□□□□ 0.25
USF1-202ENST00000368020 CTNNA3Q9UI47 895 aa16.64■□□□□ 0.25
USF1-202ENST00000368020 TPCN1Q9ULQ1 816 aa16.64■□□□□ 0.25
USF1-202ENST00000368020 RIC1Q4ADV7 1423 aa16.63■□□□□ 0.25
USF1-202ENST00000368020 ITGA6P23229 1130 aa16.63■□□□□ 0.25
USF1-202ENST00000368020 TTF1Q15361 905 aaPredicted RBP16.63■□□□□ 0.25
USF1-202ENST00000368020 SLC15A2Q16348 729 aa16.63■□□□□ 0.25
USF1-202ENST00000368020 ATP2B3Q16720 1220 aa16.63■□□□□ 0.25
USF1-202ENST00000368020 PARP10Q53GL7 1025 aa16.63■□□□□ 0.25
USF1-202ENST00000368020 METTL24Q5JXM2 366 aa16.63■□□□□ 0.25
USF1-202ENST00000368020 FOXD4L5Q5VV16 416 aaPredicted RBP16.63■□□□□ 0.25
USF1-202ENST00000368020 LDHAL6AQ6ZMR3 332 aa16.63■□□□□ 0.25
USF1-202ENST00000368020 FOXD4L4Q8WXT5 416 aaPredicted RBP16.63■□□□□ 0.25
USF1-202ENST00000368020 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.63■□□□□ 0.254e-8■■■■■ 30.4
USF1-202ENST00000368020 STK32BQ9NY57 414 aa16.63■□□□□ 0.25
USF1-202ENST00000368020 RIPOR2Q9Y4F9 1068 aa16.63■□□□□ 0.25
USF1-202ENST00000368020 QSER1Q2KHR3 1735 aa16.62■□□□□ 0.25
USF1-202ENST00000368020 LARGE1O95461 756 aa16.62■□□□□ 0.25
USF1-202ENST00000368020 GAS2L3Q86XJ1 694 aa16.62■□□□□ 0.25
USF1-202ENST00000368020 BCL2L12Q9HB09 334 aa16.62■□□□□ 0.25
USF1-202ENST00000368020 CYP21A2P08686 494 aa16.62■□□□□ 0.25
USF1-202ENST00000368020 NASPP49321 788 aaPredicted RBP16.62■□□□□ 0.25
USF1-202ENST00000368020 TOB2Q14106 344 aaPredicted RBP16.62■□□□□ 0.25
USF1-202ENST00000368020 SMIM5Q71RC9 77 aa16.62■□□□□ 0.25
USF1-202ENST00000368020 CNNM1Q9NRU3 951 aa16.62■□□□□ 0.25
USF1-202ENST00000368020 KIF3AQ9Y496 699 aa16.62■□□□□ 0.25
USF1-202ENST00000368020 MROH5Q6ZUA9 1318 aa16.61■□□□□ 0.25
USF1-202ENST00000368020 LETM1O95202 739 aaPredicted RBP16.61■□□□□ 0.25
USF1-202ENST00000368020 GPTP24298 496 aa16.61■□□□□ 0.25
USF1-202ENST00000368020 CCDC173Q0VFZ6 552 aa16.61■□□□□ 0.25
USF1-202ENST00000368020 LRSAM1Q6UWE0 723 aa16.61■□□□□ 0.25
USF1-202ENST00000368020 LLPHQ9BRT6 129 aaKnown RBP16.61■□□□□ 0.25
USF1-202ENST00000368020 ANO8Q9HCE9 1232 aaPredicted RBP16.61■□□□□ 0.25
USF1-202ENST00000368020 SRP68Q9UHB9 627 aaKnown RBP16.61■□□□□ 0.25
USF1-202ENST00000368020 AKAP11Q9UKA4 1901 aa16.61■□□□□ 0.25
USF1-202ENST00000368020 UBE2HP62256 183 aa16.6■□□□□ 0.25
USF1-202ENST00000368020 LARP1BQ659C4 914 aaKnown RBP16.6■□□□□ 0.25
USF1-202ENST00000368020 DHX32Q7L7V1 743 aaKnown RBP16.6■□□□□ 0.25
USF1-202ENST00000368020 GREM2Q9H772 168 aa16.6■□□□□ 0.25
USF1-202ENST00000368020 MTMR6Q9Y217 621 aa16.6■□□□□ 0.25
USF1-202ENST00000368020 NIP7Q9Y221 180 aaKnown RBP eCLIP16.6■□□□□ 0.25
USF1-202ENST00000368020 NDUFB9Q9Y6M9 179 aa16.6■□□□□ 0.25
USF1-202ENST00000368020 MAST3O60307 1309 aa16.6■□□□□ 0.25
USF1-202ENST00000368020 UBN2Q6ZU65 1347 aa16.6■□□□□ 0.25
USF1-202ENST00000368020 UQCRFS1P1P0C7P4 283 aa16.59■□□□□ 0.25
USF1-202ENST00000368020 HSPD1P10809 573 aaKnown RBP16.59■□□□□ 0.25
USF1-202ENST00000368020 GYS1P13807 737 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms