RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 KCNJ4P48050 445 aa22.6■■□□□ 1.21
CLN3-204ENST00000357857 NMIQ13287 307 aaPredicted RBP22.6■■□□□ 1.21
CLN3-204ENST00000357857 TICAM2Q86XR7 235 aa22.6■■□□□ 1.21
CLN3-204ENST00000357857 PDGFDQ9GZP0 370 aaPredicted RBP22.6■■□□□ 1.21
CLN3-204ENST00000357857 IL25Q9H293 177 aa22.6■■□□□ 1.21
CLN3-204ENST00000357857 BBOX1O75936 387 aa22.59■■□□□ 1.21
CLN3-204ENST00000357857 ZAP70P43403 619 aa22.59■■□□□ 1.21
CLN3-204ENST00000357857 DDRGK1Q96HY6 314 aa22.59■■□□□ 1.21
CLN3-204ENST00000357857 ANO2Q9NQ90 1003 aa22.59■■□□□ 1.21
CLN3-204ENST00000357857 SLC16A10Q8TF71 515 aa22.58■■□□□ 1.21
CLN3-204ENST00000357857 ANTXR1Q9H6X2 564 aa22.58■■□□□ 1.21
CLN3-204ENST00000357857 RAD50Q92878 1312 aa22.57■■□□□ 1.2
CLN3-204ENST00000357857 LRRC37AA6NMS7 1700 aa22.57■■□□□ 1.2
CLN3-204ENST00000357857 SRGNP10124 158 aa22.57■■□□□ 1.2
CLN3-204ENST00000357857 NPR1P16066 1061 aa22.57■■□□□ 1.2
CLN3-204ENST00000357857 BCAMP50895 628 aa22.57■■□□□ 1.2
CLN3-204ENST00000357857 PI16Q6UXB8 463 aa22.57■■□□□ 1.2
CLN3-204ENST00000357857 FAM227BQ96M60 508 aa22.57■■□□□ 1.2
CLN3-204ENST00000357857 MYO5AQ9Y4I1 1855 aaKnown RBP22.57■■□□□ 1.2
CLN3-204ENST00000357857 IPO9Q96P70 1041 aaKnown RBP22.57■■□□□ 1.2
CLN3-204ENST00000357857 ZNF804BA4D1E1 1349 aa22.56■■□□□ 1.2
CLN3-204ENST00000357857 MYH13Q9UKX3 1938 aa22.56■■□□□ 1.2
CLN3-204ENST00000357857 A0A0D9SFI3 127 aa22.56■■□□□ 1.2
CLN3-204ENST00000357857 WTIPA6NIX2 430 aaPredicted RBP22.56■■□□□ 1.2
CLN3-204ENST00000357857 EPB41L2O43491 1005 aaKnown RBP22.56■■□□□ 1.2
CLN3-204ENST00000357857 TMC4Q7Z404 712 aa22.56■■□□□ 1.2
CLN3-204ENST00000357857 ANKIB1Q9P2G1 1089 aa22.56■■□□□ 1.2
CLN3-204ENST00000357857 CACNA1SQ13698 1873 aa22.56■■□□□ 1.2
CLN3-204ENST00000357857 XDHP47989 1333 aa22.55■■□□□ 1.2
CLN3-204ENST00000357857 LRRFIP1Q32MZ4 808 aaKnown RBP22.55■■□□□ 1.2
CLN3-204ENST00000357857 CAVIN4Q5BKX8 364 aa22.55■■□□□ 1.2
CLN3-204ENST00000357857 KIAA1211Q6ZU35 1233 aa22.55■■□□□ 1.2
CLN3-204ENST00000357857 HMG20BQ9P0W2 317 aa22.55■■□□□ 1.2
CLN3-204ENST00000357857 LEMD3Q9Y2U8 911 aa22.55■■□□□ 1.2
CLN3-204ENST00000357857 GYG1P46976 350 aa22.54■■□□□ 1.2
CLN3-204ENST00000357857 RASGRF1Q13972 1273 aa22.54■■□□□ 1.2
CLN3-204ENST00000357857 TTF1Q15361 905 aaPredicted RBP22.54■■□□□ 1.2
CLN3-204ENST00000357857 SPATA5Q8NB90 893 aa22.54■■□□□ 1.2
CLN3-204ENST00000357857 MASTLQ96GX5 879 aa22.54■■□□□ 1.2
CLN3-204ENST00000357857 GNL3LQ9NVN8 582 aaKnown RBP22.54■■□□□ 1.2
CLN3-204ENST00000357857 DOCK2Q92608 1830 aa22.54■■□□□ 1.2
CLN3-204ENST00000357857 ALDH1B1P30837 517 aa22.54■■□□□ 1.2
CLN3-204ENST00000357857 LSG1Q9H089 658 aaKnown RBP22.54■■□□□ 1.2
CLN3-204ENST00000357857 PPEF1O14829 653 aaPredicted RBP22.53■■□□□ 1.2
CLN3-204ENST00000357857 CYP2E1P05181 493 aaPredicted RBP22.53■■□□□ 1.2
CLN3-204ENST00000357857 SLC51AQ86UW1 340 aa22.53■■□□□ 1.2
CLN3-204ENST00000357857 VPS37DQ86XT2 251 aa22.53■■□□□ 1.2
CLN3-204ENST00000357857 FAM84BQ96KN1 310 aaPredicted RBP22.53■■□□□ 1.2
CLN3-204ENST00000357857 MED23Q9ULK4 1368 aa22.53■■□□□ 1.2
CLN3-204ENST00000357857 RNF113AO15541 343 aaKnown RBP22.52■■□□□ 1.2
CLN3-204ENST00000357857 MCCP23508 829 aa22.52■■□□□ 1.2
CLN3-204ENST00000357857 GPSM2P81274 684 aa22.52■■□□□ 1.2
CLN3-204ENST00000357857 FBXO33Q7Z6M2 555 aa22.52■■□□□ 1.2
CLN3-204ENST00000357857 C2CD5Q86YS7 1000 aa22.52■■□□□ 1.2
CLN3-204ENST00000357857 KLRK1P26718 216 aa22.51■■□□□ 1.19
CLN3-204ENST00000357857 SP8Q8IXZ3 490 aa22.51■■□□□ 1.19
CLN3-204ENST00000357857 KIF2CQ99661 725 aa22.51■■□□□ 1.19
CLN3-204ENST00000357857 LTBP1Q14766 1721 aa22.51■■□□□ 1.19
CLN3-204ENST00000357857 H0YIN7 160 aa22.51■■□□□ 1.19
CLN3-204ENST00000357857 CHGBP05060 677 aa22.51■■□□□ 1.19
CLN3-204ENST00000357857 ZFYP08048 801 aaPredicted RBP22.51■■□□□ 1.19
CLN3-204ENST00000357857 ZMYM1Q5SVZ6 1142 aa22.51■■□□□ 1.19
CLN3-204ENST00000357857 DDX24Q9GZR7 859 aaKnown RBP eCLIP22.51■■□□□ 1.192e-6■■■■■ 40.7
CLN3-204ENST00000357857 PIH1D3Q9NQM4 214 aaKnown RBP22.51■■□□□ 1.19
CLN3-204ENST00000357857 HELLSQ9NRZ9 838 aa22.51■■□□□ 1.19
CLN3-204ENST00000357857 IRS2Q9Y4H2 1338 aa22.5■■□□□ 1.19
CLN3-204ENST00000357857 ATP2B4P23634 1241 aa22.5■■□□□ 1.19
CLN3-204ENST00000357857 MCMDC2Q4G0Z9 681 aa22.5■■□□□ 1.19
CLN3-204ENST00000357857 NSFL1CQ9UNZ2 370 aaKnown RBP22.5■■□□□ 1.19
CLN3-204ENST00000357857 ATP6V0A2Q9Y487 856 aa22.5■■□□□ 1.19
CLN3-204ENST00000357857 CCDC171Q6TFL3 1326 aa22.5■■□□□ 1.19
CLN3-204ENST00000357857 HIBADHP31937 336 aaKnown RBP22.49■■□□□ 1.19
CLN3-204ENST00000357857 STYK1Q6J9G0 422 aa22.49■■□□□ 1.19
CLN3-204ENST00000357857 ZSCAN25Q6NSZ9 544 aa22.49■■□□□ 1.19
CLN3-204ENST00000357857 C10orf71Q711Q0 1435 aa22.49■■□□□ 1.19
CLN3-204ENST00000357857 ZNF622Q969S3 477 aaKnown RBP eCLIP22.49■■□□□ 1.19
CLN3-204ENST00000357857 PODXL2Q9NZ53 605 aa22.49■■□□□ 1.19
CLN3-204ENST00000357857 GGA1Q9UJY5 639 aa22.49■■□□□ 1.19
CLN3-204ENST00000357857 ZNF589Q86UQ0 364 aaPredicted RBP22.48■■□□□ 1.19
CLN3-204ENST00000357857 SEC62Q99442 399 aaKnown RBP22.48■■□□□ 1.19
CLN3-204ENST00000357857 IQSEC3Q9UPP2 1182 aaPredicted RBP22.48■■□□□ 1.19
CLN3-204ENST00000357857 SEMA3EO15041 775 aa22.48■■□□□ 1.19
CLN3-204ENST00000357857 UFL1O94874 794 aa22.48■■□□□ 1.19
CLN3-204ENST00000357857 PTH1RQ03431 593 aa22.48■■□□□ 1.19
CLN3-204ENST00000357857 SLFNL1Q499Z3 407 aa22.48■■□□□ 1.19
CLN3-204ENST00000357857 C15orf52Q6ZUT6 534 aaKnown RBP22.48■■□□□ 1.19
CLN3-204ENST00000357857 DENND2AQ9ULE3 1009 aa22.48■■□□□ 1.19
CLN3-204ENST00000357857 DLEC1Q9Y238 1755 aa22.47■■□□□ 1.19
CLN3-204ENST00000357857 IDH1O75874 414 aaKnown RBP22.47■■□□□ 1.19
CLN3-204ENST00000357857 TXNRD3Q86VQ6 643 aa22.47■■□□□ 1.19
CLN3-204ENST00000357857 COL1A1P02452 1464 aaPredicted RBP22.46■■□□□ 1.19
CLN3-204ENST00000357857 SLX4Q8IY92 1834 aa22.46■■□□□ 1.19
CLN3-204ENST00000357857 HSPA4P34932 840 aa22.46■■□□□ 1.19
CLN3-204ENST00000357857 KIF13BQ9NQT8 1826 aa22.46■■□□□ 1.19
CLN3-204ENST00000357857 CHRNA5P30532 468 aa22.45■■□□□ 1.19
CLN3-204ENST00000357857 ADD2P35612 726 aa22.45■■□□□ 1.19
CLN3-204ENST00000357857 ANAPC15P60006 121 aa22.45■■□□□ 1.19
CLN3-204ENST00000357857 CCDC129Q6ZRS4 1044 aa22.45■■□□□ 1.19
CLN3-204ENST00000357857 APPBP2Q92624 585 aa22.45■■□□□ 1.19
CLN3-204ENST00000357857 ZBTB22O15209 634 aa22.45■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms