RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 VIMP08670 466 aaKnown RBP13.62□□□□□ -0.23
PCF11-201ENST00000298281 DAPK3O43293 454 aa13.62□□□□□ -0.23
PCF11-201ENST00000298281 TUBB4AP04350 444 aa13.62□□□□□ -0.23
PCF11-201ENST00000298281 CNGA1P29973 690 aa13.62□□□□□ -0.23
PCF11-201ENST00000298281 TMC6Q7Z403 805 aa13.62□□□□□ -0.23
PCF11-201ENST00000298281 IFNL2Q8IZJ0 200 aa13.62□□□□□ -0.23
PCF11-201ENST00000298281 SFMBT1Q9UHJ3 866 aa13.62□□□□□ -0.23
PCF11-201ENST00000298281 CASQ2O14958 399 aaPredicted RBP13.62□□□□□ -0.23
PCF11-201ENST00000298281 RAPGEF3O95398 923 aa13.62□□□□□ -0.23
PCF11-201ENST00000298281 CDR2Q01850 454 aa13.62□□□□□ -0.23
PCF11-201ENST00000298281 AKR1B10O60218 316 aa13.61□□□□□ -0.23
PCF11-201ENST00000298281 CCDC25Q86WR0 208 aa13.61□□□□□ -0.23
PCF11-201ENST00000298281 STMN4Q9H169 189 aaPredicted RBP13.61□□□□□ -0.23
PCF11-201ENST00000298281 STMN1P16949 149 aa13.61□□□□□ -0.23
PCF11-201ENST00000298281 ISM2Q6H9L7 571 aa13.61□□□□□ -0.23
PCF11-201ENST00000298281 CC2D2AQ9P2K1 1620 aa13.61□□□□□ -0.23
PCF11-201ENST00000298281 MAFGO15525 162 aa13.61□□□□□ -0.23
PCF11-201ENST00000298281 KCNG4Q8TDN1 519 aa13.61□□□□□ -0.23
PCF11-201ENST00000298281 CCDC77Q9BR77 488 aa13.61□□□□□ -0.23
PCF11-201ENST00000298281 SMARCA5O60264 1052 aaPredicted RBP13.61□□□□□ -0.23
PCF11-201ENST00000298281 CCT2P78371 535 aaKnown RBP13.61□□□□□ -0.23
PCF11-201ENST00000298281 CCDC171Q6TFL3 1326 aa13.61□□□□□ -0.23
PCF11-201ENST00000298281 N4BP3O15049 544 aa13.61□□□□□ -0.23
PCF11-201ENST00000298281 ALDH3A1P30838 453 aa13.61□□□□□ -0.23
PCF11-201ENST00000298281 TRIM47Q96LD4 638 aa13.61□□□□□ -0.23
PCF11-201ENST00000298281 RABGAP1Q9Y3P9 1069 aa13.61□□□□□ -0.23
PCF11-201ENST00000298281 GTF2F1P35269 517 aaKnown RBP eCLIP13.61□□□□□ -0.234e-14■■■■□ 21
PCF11-201ENST00000298281 SPAG5Q96R06 1193 aa13.61□□□□□ -0.23
PCF11-201ENST00000298281 ITM2BQ9Y287 266 aa13.61□□□□□ -0.23
PCF11-201ENST00000298281 IL16Q14005 1332 aa13.61□□□□□ -0.23
PCF11-201ENST00000298281 FAM135AQ9P2D6 1515 aa13.6□□□□□ -0.23
PCF11-201ENST00000298281 GJB2P29033 226 aa13.6□□□□□ -0.23
PCF11-201ENST00000298281 CCDC152Q4G0S7 254 aa13.6□□□□□ -0.23
PCF11-201ENST00000298281 TMTC4Q5T4D3 741 aa13.6□□□□□ -0.23
PCF11-201ENST00000298281 FMNL3Q8IVF7 1028 aa13.6□□□□□ -0.23
PCF11-201ENST00000298281 MSANTD4Q8NCY6 345 aa13.6□□□□□ -0.23
PCF11-201ENST00000298281 KCNK9Q9NPC2 374 aa13.6□□□□□ -0.23
PCF11-201ENST00000298281 DMRT2Q9Y5R5 561 aa13.6□□□□□ -0.23
PCF11-201ENST00000298281 ST5P78524 1137 aa13.6□□□□□ -0.23
PCF11-201ENST00000298281 PLCB4Q15147 1175 aa13.6□□□□□ -0.23
PCF11-201ENST00000298281 SH2D4BQ5SQS7 431 aa13.6□□□□□ -0.23
PCF11-201ENST00000298281 ADAMTS2O95450 1211 aa13.6□□□□□ -0.23
PCF11-201ENST00000298281 GOLGA1Q92805 767 aa13.6□□□□□ -0.23
PCF11-201ENST00000298281 SDCCAG8Q86SQ7 713 aaPredicted RBP13.6□□□□□ -0.23
PCF11-201ENST00000298281 STMN2Q93045 179 aa13.6□□□□□ -0.23
PCF11-201ENST00000298281 PPFIBP2Q8ND30 876 aa13.59□□□□□ -0.23
PCF11-201ENST00000298281 ESR2Q92731 530 aa13.59□□□□□ -0.23
PCF11-201ENST00000298281 HAUS2Q9NVX0 235 aa13.59□□□□□ -0.23
PCF11-201ENST00000298281 SPDYE16A6NNV3 312 aaPredicted RBP13.59□□□□□ -0.23
PCF11-201ENST00000298281 CIB2O75838 187 aa13.59□□□□□ -0.23
PCF11-201ENST00000298281 SPDYE2Q495Y8 402 aa13.59□□□□□ -0.23
PCF11-201ENST00000298281 MICU3Q86XE3 530 aa13.59□□□□□ -0.23
PCF11-201ENST00000298281 WTAPQ15007 396 aa13.59□□□□□ -0.23
PCF11-201ENST00000298281 PRIMPOLQ96LW4 560 aa13.59□□□□□ -0.23
PCF11-201ENST00000298281 C16orf45Q96MC5 204 aaPredicted RBP13.59□□□□□ -0.23
PCF11-201ENST00000298281 USP25Q9UHP3 1055 aa13.59□□□□□ -0.23
PCF11-201ENST00000298281 SYKP43405 635 aa13.59□□□□□ -0.23
PCF11-201ENST00000298281 WASLO00401 505 aaPredicted RBP13.59□□□□□ -0.23
PCF11-201ENST00000298281 LMBR1Q8WVP7 490 aa13.59□□□□□ -0.23
PCF11-201ENST00000298281 NGLY1Q96IV0 654 aa13.59□□□□□ -0.23
PCF11-201ENST00000298281 SNRPA1P09661 255 aaKnown RBP13.59□□□□□ -0.23
PCF11-201ENST00000298281 BAG1Q99933 345 aaPredicted RBP13.58□□□□□ -0.23
PCF11-201ENST00000298281 THUMPD2Q9BTF0 503 aaKnown RBP13.58□□□□□ -0.23
PCF11-201ENST00000298281 TRIM6Q9C030 488 aaPredicted RBP13.58□□□□□ -0.23
PCF11-201ENST00000298281 MAP3K2Q9Y2U5 619 aa13.58□□□□□ -0.23
PCF11-201ENST00000298281 GTF2A1P52655 376 aaPredicted RBP13.58□□□□□ -0.24
PCF11-201ENST00000298281 RAB11FIP4Q86YS3 637 aa13.58□□□□□ -0.24
PCF11-201ENST00000298281 AFAP1L2Q8N4X5 818 aa13.58□□□□□ -0.24
PCF11-201ENST00000298281 SLC26A6Q9BXS9 759 aa13.58□□□□□ -0.24
PCF11-201ENST00000298281 ZBTB21Q9ULJ3 1066 aa13.58□□□□□ -0.24
PCF11-201ENST00000298281 TTLL3Q9Y4R7 772 aa13.58□□□□□ -0.24
PCF11-201ENST00000298281 CALM1P0DP23 149 aa13.58□□□□□ -0.24
PCF11-201ENST00000298281 CALM2P0DP24 149 aa13.58□□□□□ -0.24
PCF11-201ENST00000298281 CALM3P0DP25 149 aa13.58□□□□□ -0.24
PCF11-201ENST00000298281 SLC8A3P57103 927 aa13.58□□□□□ -0.24
PCF11-201ENST00000298281 WWC3Q9ULE0 1092 aa13.58□□□□□ -0.24
PCF11-201ENST00000298281 PSMA7O14818 248 aa13.58□□□□□ -0.24
PCF11-201ENST00000298281 CTAGE6Q86UF2 777 aa13.58□□□□□ -0.24
PCF11-201ENST00000298281 CEP57Q86XR8 500 aa13.58□□□□□ -0.24
PCF11-201ENST00000298281 ATRIPQ8WXE1 791 aa13.58□□□□□ -0.24
PCF11-201ENST00000298281 ZSWIM4Q9H7M6 989 aa13.58□□□□□ -0.24
PCF11-201ENST00000298281 CEP85LQ5SZL2 805 aa13.58□□□□□ -0.24
PCF11-201ENST00000298281 C4orf50Q6ZRC1 276 aa13.58□□□□□ -0.24
PCF11-201ENST00000298281 HDAC9Q9UKV0 1011 aa13.58□□□□□ -0.24
PCF11-201ENST00000298281 CCT6AP40227 531 aaKnown RBP13.57□□□□□ -0.24
PCF11-201ENST00000298281 CHMP6Q96FZ7 201 aa13.57□□□□□ -0.24
PCF11-201ENST00000298281 ADCY5O95622 1261 aa13.57□□□□□ -0.24
PCF11-201ENST00000298281 PPFIA1Q13136 1202 aa13.57□□□□□ -0.24
PCF11-201ENST00000298281 TNPO1Q92973 898 aaKnown RBP13.57□□□□□ -0.24
PCF11-201ENST00000298281 TTC14Q96N46 770 aa13.57□□□□□ -0.24
PCF11-201ENST00000298281 ZBTB43O43298 467 aa13.57□□□□□ -0.24
PCF11-201ENST00000298281 RFC4P35249 363 aa13.57□□□□□ -0.24
PCF11-201ENST00000298281 STAT6P42226 847 aa13.57□□□□□ -0.24
PCF11-201ENST00000298281 GNG11P61952 73 aa13.57□□□□□ -0.24
PCF11-201ENST00000298281 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.57□□□□□ -0.24
PCF11-201ENST00000298281 MUM1L1Q5H9M0 696 aa13.57□□□□□ -0.24
PCF11-201ENST00000298281 GPHNQ9NQX3 736 aaPredicted RBP13.57□□□□□ -0.24
PCF11-201ENST00000298281 STX8Q9UNK0 236 aa13.57□□□□□ -0.24
PCF11-201ENST00000298281 CALML3P27482 149 aa13.57□□□□□ -0.24
PCF11-201ENST00000298281 ARID4AP29374 1257 aaPredicted RBP13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms