RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 SLIT1O75093 1534 aa17.78■□□□□ 0.44
SHH-201ENST00000297261 METTL22Q9BUU2 404 aaPredicted RBP17.77■□□□□ 0.44
SHH-201ENST00000297261 ARFGAP3Q9NP61 516 aa17.77■□□□□ 0.44
SHH-201ENST00000297261 CCDC181Q5TID7 509 aa17.77■□□□□ 0.44
SHH-201ENST00000297261 AOPEPQ8N6M6 819 aa17.77■□□□□ 0.44
SHH-201ENST00000297261 C8orf37Q96NL8 207 aa17.77■□□□□ 0.44
SHH-201ENST00000297261 LRRC2Q9BYS8 371 aa17.77■□□□□ 0.44
SHH-201ENST00000297261 MAGEC2Q9UBF1 373 aaPredicted RBP17.77■□□□□ 0.44
SHH-201ENST00000297261 ITSN1Q15811 1721 aa17.77■□□□□ 0.43
SHH-201ENST00000297261 ARHGAP23Q9P227 1491 aa17.77■□□□□ 0.43
SHH-201ENST00000297261 IFIT1P09914 478 aaKnown RBP17.76■□□□□ 0.43
SHH-201ENST00000297261 TRIM22Q8IYM9 498 aa17.76■□□□□ 0.43
SHH-201ENST00000297261 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.76■□□□□ 0.43
SHH-201ENST00000297261 CCDC12Q8WUD4 166 aaPredicted RBP17.76■□□□□ 0.43
SHH-201ENST00000297261 CHMLP26374 656 aa17.75■□□□□ 0.43
SHH-201ENST00000297261 BEND3Q5T5X7 828 aa17.75■□□□□ 0.43
SHH-201ENST00000297261 SYT10Q6XYQ8 523 aa17.75■□□□□ 0.43
SHH-201ENST00000297261 KLHDC4Q8TBB5 520 aa17.75■□□□□ 0.43
SHH-201ENST00000297261 SUCLG2Q96I99 432 aa17.75■□□□□ 0.43
SHH-201ENST00000297261 RNF216Q9NWF9 866 aaPredicted RBP17.75■□□□□ 0.43
SHH-201ENST00000297261 G3V3G9 751 aa17.75■□□□□ 0.43
SHH-201ENST00000297261 DCAF8Q5TAQ9 597 aa17.75■□□□□ 0.43
SHH-201ENST00000297261 CCDC191Q8NCU4 936 aa17.75■□□□□ 0.43
SHH-201ENST00000297261 GPT2Q8TD30 523 aa17.75■□□□□ 0.43
SHH-201ENST00000297261 MAP2P11137 1827 aaKnown RBP17.75■□□□□ 0.43
SHH-201ENST00000297261 NUP133Q8WUM0 1156 aa17.75■□□□□ 0.43
SHH-201ENST00000297261 BRF1Q92994 677 aa17.75■□□□□ 0.43
SHH-201ENST00000297261 RAI14Q9P0K7 980 aa17.75■□□□□ 0.43
SHH-201ENST00000297261 AKAP2Q9Y2D5 859 aa17.75■□□□□ 0.43
SHH-201ENST00000297261 KIF13AQ9H1H9 1805 aa17.75■□□□□ 0.43
SHH-201ENST00000297261 LMOD1P29536 600 aaPredicted RBP17.74■□□□□ 0.43
SHH-201ENST00000297261 C10orf67Q8IYJ2 551 aa17.74■□□□□ 0.43
SHH-201ENST00000297261 PLBD2Q8NHP8 589 aa17.74■□□□□ 0.43
SHH-201ENST00000297261 TXLNBQ8N3L3 684 aa17.74■□□□□ 0.43
SHH-201ENST00000297261 RBM8AQ9Y5S9 174 aaKnown RBP17.74■□□□□ 0.43
SHH-201ENST00000297261 U3KPZ7 1027 aaPredicted RBP17.74■□□□□ 0.43
SHH-201ENST00000297261 UBR1Q8IWV7 1749 aa17.74■□□□□ 0.43
SHH-201ENST00000297261 CCDC150Q8NCX0 1101 aa17.74■□□□□ 0.43
SHH-201ENST00000297261 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.74■□□□□ 0.43
SHH-201ENST00000297261 WDR17Q8IZU2 1322 aa17.74■□□□□ 0.43
SHH-201ENST00000297261 KIF20BQ96Q89 1820 aa17.74■□□□□ 0.43
SHH-201ENST00000297261 ATP6V1AP38606 617 aa17.73■□□□□ 0.43
SHH-201ENST00000297261 LDHAL6AQ6ZMR3 332 aa17.73■□□□□ 0.43
SHH-201ENST00000297261 SMARCC1Q92922 1105 aaPredicted RBP17.73■□□□□ 0.43
SHH-201ENST00000297261 KDRP35968 1356 aa17.73■□□□□ 0.43
SHH-201ENST00000297261 RAB11FIP4Q86YS3 637 aa17.73■□□□□ 0.43
SHH-201ENST00000297261 ANKRD18BA2A2Z9 1011 aa17.73■□□□□ 0.43
SHH-201ENST00000297261 GSPT1P15170 499 aaKnown RBP17.73■□□□□ 0.43
SHH-201ENST00000297261 KIAA1328Q86T90 577 aa17.73■□□□□ 0.43
SHH-201ENST00000297261 CCDC82Q8N4S0 544 aa17.73■□□□□ 0.43
SHH-201ENST00000297261 ZNF652Q9Y2D9 606 aa17.73■□□□□ 0.43
SHH-201ENST00000297261 GCKRQ14397 625 aa17.72■□□□□ 0.43
SHH-201ENST00000297261 GOLGA6L10A6NI86 522 aa17.72■□□□□ 0.43
SHH-201ENST00000297261 LIG1P18858 919 aa17.72■□□□□ 0.43
SHH-201ENST00000297261 CNNM3Q8NE01 707 aa17.72■□□□□ 0.43
SHH-201ENST00000297261 NEK1Q96PY6 1258 aa17.72■□□□□ 0.43
SHH-201ENST00000297261 RSPH14Q9UHP6 348 aa17.72■□□□□ 0.43
SHH-201ENST00000297261 GOLIM4O00461 696 aa17.72■□□□□ 0.43
SHH-201ENST00000297261 IGHMBP2P38935 993 aaKnown RBP17.72■□□□□ 0.43
SHH-201ENST00000297261 UBASH3AP57075 661 aa17.72■□□□□ 0.43
SHH-201ENST00000297261 CTNNA3Q9UI47 895 aa17.72■□□□□ 0.43
SHH-201ENST00000297261 ERVV-2B6SEH9 535 aa17.72■□□□□ 0.43
SHH-201ENST00000297261 IDH1O75874 414 aaKnown RBP17.72■□□□□ 0.43
SHH-201ENST00000297261 DNAJC10Q8IXB1 793 aa17.72■□□□□ 0.43
SHH-201ENST00000297261 SNRKQ9NRH2 765 aa17.72■□□□□ 0.43
SHH-201ENST00000297261 CRB1P82279 1406 aa17.71■□□□□ 0.43
SHH-201ENST00000297261 TXLNAP40222 546 aa17.71■□□□□ 0.43
SHH-201ENST00000297261 PLCD4Q9BRC7 762 aa17.71■□□□□ 0.43
SHH-201ENST00000297261 ELF2Q15723 593 aa17.71■□□□□ 0.43
SHH-201ENST00000297261 SSH3Q8TE77 659 aa17.71■□□□□ 0.43
SHH-201ENST00000297261 SHTN1A0MZ66 631 aa17.71■□□□□ 0.43
SHH-201ENST00000297261 DDX46Q7L014 1031 aaKnown RBP17.71■□□□□ 0.43
SHH-201ENST00000297261 CCDC148Q8NFR7 591 aa17.71■□□□□ 0.43
SHH-201ENST00000297261 CARD10Q9BWT7 1032 aa17.71■□□□□ 0.43
SHH-201ENST00000297261 RAD21O60216 631 aa17.7■□□□□ 0.42
SHH-201ENST00000297261 PHACTR2O75167 634 aa17.7■□□□□ 0.42
SHH-201ENST00000297261 ODF2Q5BJF6 829 aa17.7■□□□□ 0.42
SHH-201ENST00000297261 TTC41PQ6P2S7 1318 aa17.7■□□□□ 0.42
SHH-201ENST00000297261 CDKL5O76039 1030 aa17.7■□□□□ 0.42
SHH-201ENST00000297261 BRD1O95696 1058 aa17.7■□□□□ 0.42
SHH-201ENST00000297261 CAPN2P17655 700 aa17.7■□□□□ 0.42
SHH-201ENST00000297261 ZSCAN16Q9H4T2 348 aaPredicted RBP17.7■□□□□ 0.42
SHH-201ENST00000297261 NEURL1BA8MQ27 555 aa17.7■□□□□ 0.42
SHH-201ENST00000297261 CYP27B1O15528 508 aa17.7■□□□□ 0.42
SHH-201ENST00000297261 GTF2A1P52655 376 aaPredicted RBP17.7■□□□□ 0.42
SHH-201ENST00000297261 EIF5P55010 431 aaKnown RBP17.7■□□□□ 0.42
SHH-201ENST00000297261 TNS3Q68CZ2 1445 aa17.69■□□□□ 0.42
SHH-201ENST00000297261 TFCP2Q12800 502 aa17.69■□□□□ 0.42
SHH-201ENST00000297261 IMMTQ16891 758 aaKnown RBP17.69■□□□□ 0.42
SHH-201ENST00000297261 DZIP3Q86Y13 1208 aaKnown RBP17.69■□□□□ 0.42
SHH-201ENST00000297261 EPS15P42566 896 aa17.68■□□□□ 0.42
SHH-201ENST00000297261 MNAT1P51948 309 aa17.68■□□□□ 0.42
SHH-201ENST00000297261 GABPB1Q06547 395 aaPredicted RBP17.68■□□□□ 0.42
SHH-201ENST00000297261 C3P01024 1663 aa17.68■□□□□ 0.42
SHH-201ENST00000297261 ERO1AQ96HE7 468 aa17.68■□□□□ 0.42
SHH-201ENST00000297261 IFNKQ9P0W0 207 aa17.68■□□□□ 0.42
SHH-201ENST00000297261 ORC3Q9UBD5 711 aaPredicted RBP17.68■□□□□ 0.42
SHH-201ENST00000297261 LRMPQ12912 555 aa17.68■□□□□ 0.42
SHH-201ENST00000297261 MAP9Q49MG5 647 aa17.68■□□□□ 0.42
SHH-201ENST00000297261 GIMAP7Q8NHV1 300 aa17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms