RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 JADE2Q9NQC1 790 aa19.73■□□□□ 0.75
SHANK1-201ENST00000293441 GOLGA6L10A0A0M3HER8 536 aa19.73■□□□□ 0.75
SHANK1-201ENST00000293441 GJA3Q9Y6H8 435 aa19.73■□□□□ 0.75
SHANK1-201ENST00000293441 TRAPPC8Q9Y2L5 1435 aa19.73■□□□□ 0.75
SHANK1-201ENST00000293441 BMP15O95972 392 aa19.73■□□□□ 0.75
SHANK1-201ENST00000293441 SPECC1Q5M775 1068 aa19.73■□□□□ 0.75
SHANK1-201ENST00000293441 UGGT2Q9NYU1 1516 aa19.73■□□□□ 0.75
SHANK1-201ENST00000293441 PCDHB15Q9Y5E8 787 aa19.73■□□□□ 0.75
SHANK1-201ENST00000293441 RTL9Q8NET4 1388 aa19.73■□□□□ 0.75
SHANK1-201ENST00000293441 TBC1D32Q96NH3 1257 aa19.72■□□□□ 0.75
SHANK1-201ENST00000293441 ZBTB21Q9ULJ3 1066 aa19.72■□□□□ 0.75
SHANK1-201ENST00000293441 FAM212AQ96EL1 285 aa19.72■□□□□ 0.75
SHANK1-201ENST00000293441 ASIC1P78348 528 aa19.72■□□□□ 0.75
SHANK1-201ENST00000293441 KCNG4Q8TDN1 519 aa19.72■□□□□ 0.75
SHANK1-201ENST00000293441 KCNA6P17658 529 aa19.72■□□□□ 0.75
SHANK1-201ENST00000293441 LMOD1P29536 600 aaPredicted RBP19.72■□□□□ 0.75
SHANK1-201ENST00000293441 MAP3K9P80192 1104 aa19.72■□□□□ 0.75
SHANK1-201ENST00000293441 SAP30BPQ9UHR5 308 aaKnown RBP19.72■□□□□ 0.75
SHANK1-201ENST00000293441 EIF2AK4Q9P2K8 1649 aaKnown RBP19.72■□□□□ 0.75
SHANK1-201ENST00000293441 FERMT1Q9BQL6 677 aa19.72■□□□□ 0.75
SHANK1-201ENST00000293441 TSPYL6Q8N831 410 aa19.71■□□□□ 0.75
SHANK1-201ENST00000293441 RGS22Q8NE09 1264 aa19.71■□□□□ 0.75
SHANK1-201ENST00000293441 SHTN1A0MZ66 631 aa19.71■□□□□ 0.75
SHANK1-201ENST00000293441 NEMFO60524 1076 aa19.71■□□□□ 0.75
SHANK1-201ENST00000293441 TCHPQ9BT92 498 aa19.71■□□□□ 0.75
SHANK1-201ENST00000293441 PRAG1Q86YV5 1406 aa19.71■□□□□ 0.75
SHANK1-201ENST00000293441 CCDC172P0C7W6 258 aa19.71■□□□□ 0.75
SHANK1-201ENST00000293441 TNNI2P48788 182 aa19.71■□□□□ 0.75
SHANK1-201ENST00000293441 TRPM2O94759 1503 aa19.71■□□□□ 0.75
SHANK1-201ENST00000293441 EIF4G3O43432 1585 aaKnown RBP19.71■□□□□ 0.75
SHANK1-201ENST00000293441 UBASH3AP57075 661 aa19.71■□□□□ 0.75
SHANK1-201ENST00000293441 KRT2P35908 639 aa19.7■□□□□ 0.74
SHANK1-201ENST00000293441 USP37Q86T82 979 aa19.7■□□□□ 0.74
SHANK1-201ENST00000293441 DHX58Q96C10 678 aa19.7■□□□□ 0.74
SHANK1-201ENST00000293441 MRVI1Q9Y6F6 885 aa19.7■□□□□ 0.74
SHANK1-201ENST00000293441 DPH6Q7L8W6 267 aa19.7■□□□□ 0.74
SHANK1-201ENST00000293441 SPAG5Q96R06 1193 aa19.7■□□□□ 0.74
SHANK1-201ENST00000293441 APOBRQ0VD83 1088 aa19.7■□□□□ 0.74
SHANK1-201ENST00000293441 ZMYM3Q14202 1370 aa19.69■□□□□ 0.74
SHANK1-201ENST00000293441 SNW1Q13573 536 aaKnown RBP19.69■□□□□ 0.74
SHANK1-201ENST00000293441 IP6K1Q92551 441 aa19.69■□□□□ 0.74
SHANK1-201ENST00000293441 AKR1B10O60218 316 aa19.69■□□□□ 0.74
SHANK1-201ENST00000293441 RXRAP19793 462 aa19.69■□□□□ 0.74
SHANK1-201ENST00000293441 SP4Q02446 784 aa19.69■□□□□ 0.74
SHANK1-201ENST00000293441 ACTN2P35609 894 aa19.69■□□□□ 0.74
SHANK1-201ENST00000293441 CCNL1Q9UK58 526 aaPredicted RBP19.69■□□□□ 0.74
SHANK1-201ENST00000293441 B4DLN1 442 aa19.68■□□□□ 0.74
SHANK1-201ENST00000293441 MCM7P33993 719 aa19.68■□□□□ 0.74
SHANK1-201ENST00000293441 MRPL12P52815 198 aaKnown RBP19.68■□□□□ 0.74
SHANK1-201ENST00000293441 IFI16Q16666 785 aaKnown RBP19.68■□□□□ 0.74
SHANK1-201ENST00000293441 CNBD1Q8NA66 436 aa19.68■□□□□ 0.74
SHANK1-201ENST00000293441 ZKSCAN3Q9BRR0 538 aa19.68■□□□□ 0.74
SHANK1-201ENST00000293441 STAMBPO95630 424 aa19.68■□□□□ 0.74
SHANK1-201ENST00000293441 NUP160Q12769 1436 aa19.68■□□□□ 0.74
SHANK1-201ENST00000293441 FAM13AO94988 1023 aa19.68■□□□□ 0.74
SHANK1-201ENST00000293441 CEP85Q6P2H3 762 aa19.68■□□□□ 0.74
SHANK1-201ENST00000293441 TTC41PQ6P2S7 1318 aa19.67■□□□□ 0.74
SHANK1-201ENST00000293441 ZSCAN23Q3MJ62 389 aa19.67■□□□□ 0.74
SHANK1-201ENST00000293441 ANO6Q4KMQ2 910 aa19.67■□□□□ 0.74
SHANK1-201ENST00000293441 MRPS27Q92552 414 aaKnown RBP19.67■□□□□ 0.74
SHANK1-201ENST00000293441 RAB3GAP1Q15042 981 aa19.67■□□□□ 0.74
SHANK1-201ENST00000293441 TNNQ9UQP3 1299 aa19.67■□□□□ 0.74
SHANK1-201ENST00000293441 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP19.67■□□□□ 0.74
SHANK1-201ENST00000293441 HCLS1P14317 486 aaPredicted RBP19.67■□□□□ 0.74
SHANK1-201ENST00000293441 NCBP1Q09161 790 aaKnown RBP19.67■□□□□ 0.74
SHANK1-201ENST00000293441 AKNAD1Q5T1N1 836 aa19.67■□□□□ 0.74
SHANK1-201ENST00000293441 INCENPQ9NQS7 918 aa19.67■□□□□ 0.74
SHANK1-201ENST00000293441 NUP153P49790 1475 aaKnown RBP19.67■□□□□ 0.74
SHANK1-201ENST00000293441 PLCD3Q8N3E9 789 aa19.67■□□□□ 0.74
SHANK1-201ENST00000293441 HOMER2Q9NSB8 354 aa19.67■□□□□ 0.74
SHANK1-201ENST00000293441 PABPN1LA6NDY0 278 aaKnown RBP19.67■□□□□ 0.74
SHANK1-201ENST00000293441 UFL1O94874 794 aa19.67■□□□□ 0.74
SHANK1-201ENST00000293441 FAM89AQ96GI7 184 aa19.67■□□□□ 0.74
SHANK1-201ENST00000293441 YTHDC2Q9H6S0 1430 aaKnown RBP19.67■□□□□ 0.74
SHANK1-201ENST00000293441 A0A1W2PP64 1363 aa19.67■□□□□ 0.74
SHANK1-201ENST00000293441 TRIM75PA6NK02 468 aa19.66■□□□□ 0.74
SHANK1-201ENST00000293441 CALML3P27482 149 aa19.66■□□□□ 0.74
SHANK1-201ENST00000293441 USP48Q86UV5 1035 aa19.66■□□□□ 0.74
SHANK1-201ENST00000293441 PHACTR3Q96KR7 559 aa19.66■□□□□ 0.74
SHANK1-201ENST00000293441 ZSWIM4Q9H7M6 989 aa19.66■□□□□ 0.74
SHANK1-201ENST00000293441 MAATS1Q7Z4T9 603 aa19.66■□□□□ 0.74
SHANK1-201ENST00000293441 CTAGE1Q96RT6 745 aa19.66■□□□□ 0.74
SHANK1-201ENST00000293441 SMC1AQ14683 1233 aaKnown RBP19.66■□□□□ 0.74
SHANK1-201ENST00000293441 STK32BQ9NY57 414 aa19.66■□□□□ 0.74
SHANK1-201ENST00000293441 PSMA7O14818 248 aa19.66■□□□□ 0.74
SHANK1-201ENST00000293441 POLR3GO15318 223 aaPredicted RBP19.66■□□□□ 0.74
SHANK1-201ENST00000293441 KRT79Q5XKE5 535 aa19.66■□□□□ 0.74
SHANK1-201ENST00000293441 CREB3L3Q68CJ9 461 aa19.66■□□□□ 0.74
SHANK1-201ENST00000293441 IMPG2Q9BZV3 1241 aa19.66■□□□□ 0.74
SHANK1-201ENST00000293441 FSD2A1L4K1 749 aa19.65■□□□□ 0.74
SHANK1-201ENST00000293441 ABCC10Q5T3U5 1492 aa19.65■□□□□ 0.74
SHANK1-201ENST00000293441 GOLGA6L9A6NEM1 432 aa19.65■□□□□ 0.74
SHANK1-201ENST00000293441 VAMP4O75379 141 aa19.65■□□□□ 0.74
SHANK1-201ENST00000293441 ARID5AQ03989 594 aa19.65■□□□□ 0.74
SHANK1-201ENST00000293441 DNM1Q05193 864 aaKnown RBP19.65■□□□□ 0.74
SHANK1-201ENST00000293441 GJC1P36383 396 aa19.65■□□□□ 0.74
SHANK1-201ENST00000293441 GNG11P61952 73 aa19.65■□□□□ 0.74
SHANK1-201ENST00000293441 DENND2AQ9ULE3 1009 aa19.65■□□□□ 0.74
SHANK1-201ENST00000293441 TSNARE1Q96NA8 513 aa19.64■□□□□ 0.74
SHANK1-201ENST00000293441 PLIN2Q99541 437 aa19.64■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms