RNA–Protein interactions for RNA: ENST00000270061.11

SSBP4-201, Transcript of single stranded DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SSBP4, Length 1,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-201ENST00000270061 ATP8B2P98198 1209 aa30.38■■■□□ 2.45
SSBP4-201ENST00000270061 ADAMTSL1Q8N6G6 1762 aa30.36■■■□□ 2.45
SSBP4-201ENST00000270061 ATP2B4P23634 1241 aa30.36■■■□□ 2.45
SSBP4-201ENST00000270061 IFIT5Q13325 482 aaKnown RBP30.36■■■□□ 2.45
SSBP4-201ENST00000270061 ANKRD45Q5TZF3 282 aa30.36■■■□□ 2.45
SSBP4-201ENST00000270061 ECE2O60344 883 aa30.36■■■□□ 2.45
SSBP4-201ENST00000270061 DOK7Q18PE1 504 aa30.36■■■□□ 2.45
SSBP4-201ENST00000270061 LMBR1LQ6UX01 489 aa30.36■■■□□ 2.45
SSBP4-201ENST00000270061 LRRFIP2Q9Y608 721 aaKnown RBP30.36■■■□□ 2.45
SSBP4-201ENST00000270061 SCN9AQ15858 1988 aa30.35■■■□□ 2.45
SSBP4-201ENST00000270061 G3V3G9 751 aa30.35■■■□□ 2.45
SSBP4-201ENST00000270061 EPS15P42566 896 aa30.35■■■□□ 2.45
SSBP4-201ENST00000270061 EPHA10Q5JZY3 1008 aa30.35■■■□□ 2.45
SSBP4-201ENST00000270061 DCAF8Q5TAQ9 597 aa30.35■■■□□ 2.45
SSBP4-201ENST00000270061 HDAC5Q9UQL6 1122 aa30.35■■■□□ 2.45
SSBP4-201ENST00000270061 CLEC11AQ9Y240 323 aa30.35■■■□□ 2.45
SSBP4-201ENST00000270061 NBPF7P0C2Y1 421 aaPredicted RBP30.34■■■□□ 2.45
SSBP4-201ENST00000270061 C8orf34Q49A92 452 aa30.34■■■□□ 2.45
SSBP4-201ENST00000270061 GPRC5DQ9NZD1 345 aa30.34■■■□□ 2.45
SSBP4-201ENST00000270061 GMPSP49915 693 aaPredicted RBP30.33■■■□□ 2.45
SSBP4-201ENST00000270061 UTYO14607 1347 aa30.33■■■□□ 2.45
SSBP4-201ENST00000270061 LNPKQ9C0E8 428 aa30.33■■■□□ 2.45
SSBP4-201ENST00000270061 CCDC57Q2TAC2 916 aa30.32■■■□□ 2.44
SSBP4-201ENST00000270061 SUCLG2Q96I99 432 aa30.31■■■□□ 2.44
SSBP4-201ENST00000270061 ANKRD2Q9GZV1 360 aa30.31■■■□□ 2.44
SSBP4-201ENST00000270061 PSME4Q14997 1843 aa30.31■■■□□ 2.44
SSBP4-201ENST00000270061 PSMD14O00487 310 aa30.31■■■□□ 2.44
SSBP4-201ENST00000270061 ADARB2Q9NS39 739 aaKnown RBP30.3■■■□□ 2.44
SSBP4-201ENST00000270061 A0A1B0GUL6 1792 aa30.29■■■□□ 2.44
SSBP4-201ENST00000270061 USP50Q70EL3 339 aaPredicted RBP30.29■■■□□ 2.44
SSBP4-201ENST00000270061 KCNQ5Q9NR82 932 aa30.29■■■□□ 2.44
SSBP4-201ENST00000270061 LEMD3Q9Y2U8 911 aa30.29■■■□□ 2.44
SSBP4-201ENST00000270061 MED23Q9ULK4 1368 aa30.29■■■□□ 2.44
SSBP4-201ENST00000270061 WTIPA6NIX2 430 aaPredicted RBP30.28■■■□□ 2.44
SSBP4-201ENST00000270061 HTRA3P83110 453 aa30.28■■■□□ 2.44
SSBP4-201ENST00000270061 TAF7LQ5H9L4 462 aa30.28■■■□□ 2.44
SSBP4-201ENST00000270061 SSH3Q8TE77 659 aa30.28■■■□□ 2.44
SSBP4-201ENST00000270061 KAZALD1Q96I82 304 aa30.28■■■□□ 2.44
SSBP4-201ENST00000270061 CHRNDQ07001 517 aa30.28■■■□□ 2.44
SSBP4-201ENST00000270061 PNMA6EA0A0J9YXQ4 647 aa30.27■■■□□ 2.44
SSBP4-201ENST00000270061 ZBTB12Q9Y330 459 aaPredicted RBP30.27■■■□□ 2.44
SSBP4-201ENST00000270061 MTX1Q13505 466 aa30.26■■■□□ 2.43
SSBP4-201ENST00000270061 POLA2Q14181 598 aa30.26■■■□□ 2.43
SSBP4-201ENST00000270061 BICC1Q9H694 974 aaKnown RBP30.26■■■□□ 2.43
SSBP4-201ENST00000270061 CNOT7Q9UIV1 285 aaKnown RBP30.26■■■□□ 2.43
SSBP4-201ENST00000270061 PCNTO95613 3336 aa30.25■■■□□ 2.43
SSBP4-201ENST00000270061 ZNF804BA4D1E1 1349 aa30.25■■■□□ 2.43
SSBP4-201ENST00000270061 MAP1SQ66K74 1059 aaPredicted RBP30.25■■■□□ 2.43
SSBP4-201ENST00000270061 DPF2Q92785 391 aa30.25■■■□□ 2.43
SSBP4-201ENST00000270061 ZNF594Q96JF6 807 aaPredicted RBP30.25■■■□□ 2.43
SSBP4-201ENST00000270061 KCNJ4P48050 445 aa30.24■■■□□ 2.43
SSBP4-201ENST00000270061 LDHAL6AQ6ZMR3 332 aa30.24■■■□□ 2.43
SSBP4-201ENST00000270061 PODNQ7Z5L7 613 aa30.24■■■□□ 2.43
SSBP4-201ENST00000270061 CNTROBQ8N137 903 aa30.24■■■□□ 2.43
SSBP4-201ENST00000270061 ZBTB47Q9UFB7 747 aaPredicted RBP30.24■■■□□ 2.43
SSBP4-201ENST00000270061 ITGBL1O95965 494 aaPredicted RBP30.23■■■□□ 2.43
SSBP4-201ENST00000270061 RPS12P25398 132 aaKnown RBP30.23■■■□□ 2.43
SSBP4-201ENST00000270061 H7C1D1 291 aa30.23■■■□□ 2.43
SSBP4-201ENST00000270061 RABL6Q3YEC7 729 aaPredicted RBP30.23■■■□□ 2.43
SSBP4-201ENST00000270061 MICALL2Q8IY33 904 aa30.23■■■□□ 2.43
SSBP4-201ENST00000270061 DNAJC5GQ8N7S2 189 aa30.23■■■□□ 2.43
SSBP4-201ENST00000270061 CNNM1Q9NRU3 951 aa30.23■■■□□ 2.43
SSBP4-201ENST00000270061 PASKQ96RG2 1323 aa30.23■■■□□ 2.43
SSBP4-201ENST00000270061 VIL1P09327 827 aaKnown RBP30.22■■■□□ 2.43
SSBP4-201ENST00000270061 TAF5LO75529 589 aa30.2■■■□□ 2.43
SSBP4-201ENST00000270061 TXNRD3Q86VQ6 643 aa30.2■■■□□ 2.43
SSBP4-201ENST00000270061 HELBQ8NG08 1087 aaPredicted RBP30.2■■■□□ 2.43
SSBP4-201ENST00000270061 SHTN1A0MZ66 631 aa30.2■■■□□ 2.42
SSBP4-201ENST00000270061 COA1Q9GZY4 146 aa30.19■■■□□ 2.42
SSBP4-201ENST00000270061 USP17L3A6NCW0 530 aa30.18■■■□□ 2.42
SSBP4-201ENST00000270061 USP17L4A6NCW7 530 aa30.18■■■□□ 2.42
SSBP4-201ENST00000270061 SRGAP3O43295 1099 aa30.18■■■□□ 2.42
SSBP4-201ENST00000270061 KLRK1P26718 216 aa30.18■■■□□ 2.42
SSBP4-201ENST00000270061 USP17L1Q7RTZ2 530 aa30.18■■■□□ 2.42
SSBP4-201ENST00000270061 TRPM4Q8TD43 1214 aa30.18■■■□□ 2.42
SSBP4-201ENST00000270061 CREBZFQ9NS37 354 aa30.18■■■□□ 2.42
SSBP4-201ENST00000270061 BMP2KLQ5H9B9 411 aa30.17■■■□□ 2.42
SSBP4-201ENST00000270061 RSBN1LQ6PCB5 846 aaPredicted RBP30.17■■■□□ 2.42
SSBP4-201ENST00000270061 POLR2AP24928 1970 aaKnown RBP30.16■■■□□ 2.42
SSBP4-201ENST00000270061 SNAP23O00161 211 aa30.16■■■□□ 2.42
SSBP4-201ENST00000270061 PLEKHM2Q8IWE5 1019 aa30.16■■■□□ 2.42
SSBP4-201ENST00000270061 KLRG1Q96E93 195 aa30.16■■■□□ 2.42
SSBP4-201ENST00000270061 TRPM7Q96QT4 1865 aa30.16■■■□□ 2.42
SSBP4-201ENST00000270061 EXOC6BQ9Y2D4 811 aa30.16■■■□□ 2.42
SSBP4-201ENST00000270061 ZNF609O15014 1411 aa30.16■■■□□ 2.42
SSBP4-201ENST00000270061 RAB11FIP3O75154 756 aa30.15■■■□□ 2.42
SSBP4-201ENST00000270061 HIRAP54198 1017 aaPredicted RBP30.15■■■□□ 2.42
SSBP4-201ENST00000270061 SAMD7Q7Z3H4 446 aa30.15■■■□□ 2.42
SSBP4-201ENST00000270061 AGBL3Q8NEM8 1001 aa30.15■■■□□ 2.42
SSBP4-201ENST00000270061 ZC3H15Q8WU90 426 aaKnown RBP30.15■■■□□ 2.42
SSBP4-201ENST00000270061 ZNF646O15015 1829 aaPredicted RBP30.15■■■□□ 2.42
SSBP4-201ENST00000270061 LRRCC1Q9C099 1032 aa30.15■■■□□ 2.42
SSBP4-201ENST00000270061 PUS3Q9BZE2 481 aaKnown RBP30.14■■■□□ 2.42
SSBP4-201ENST00000270061 TBC1D10BQ4KMP7 808 aaPredicted RBP30.13■■■□□ 2.41
SSBP4-201ENST00000270061 NOP58Q9Y2X3 529 aaKnown RBP30.13■■■□□ 2.41
SSBP4-201ENST00000270061 HSP90AB4PQ58FF6 505 aa30.13■■■□□ 2.41
SSBP4-201ENST00000270061 C15orf52Q6ZUT6 534 aaKnown RBP30.13■■■□□ 2.41
SSBP4-201ENST00000270061 PGAP2Q9UHJ9 254 aa30.13■■■□□ 2.41
SSBP4-201ENST00000270061 TMEM88BA6NKF7 163 aa30.12■■■□□ 2.41
SSBP4-201ENST00000270061 SMARCA5O60264 1052 aaPredicted RBP30.12■■■□□ 2.41
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms