RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 SPHARQ15513 63 aa12.78□□□□□ -0.36
NUP54-213ENST00000513352 CCDC58Q4VC31 144 aa12.78□□□□□ -0.36
NUP54-213ENST00000513352 TMEM244Q5VVB8 128 aa12.78□□□□□ -0.36
NUP54-213ENST00000513352 RPL22L1Q6P5R6 122 aaKnown RBP12.78□□□□□ -0.36
NUP54-213ENST00000513352 DOK3Q7L591 496 aa12.78□□□□□ -0.36
NUP54-213ENST00000513352 RDH10Q8IZV5 341 aa12.78□□□□□ -0.36
NUP54-213ENST00000513352 ZCCHC24Q8N2G6 241 aaKnown RBP12.78□□□□□ -0.36
NUP54-213ENST00000513352 OR8G5Q8NG78 346 aa12.78□□□□□ -0.36
NUP54-213ENST00000513352 OR5M11Q96RB7 305 aa12.78□□□□□ -0.36
NUP54-213ENST00000513352 PDCD1LG2Q9BQ51 273 aa12.78□□□□□ -0.36
NUP54-213ENST00000513352 PAPOLGQ9BWT3 736 aaKnown RBP12.78□□□□□ -0.36
NUP54-213ENST00000513352 MS4A5Q9H3V2 200 aa12.78□□□□□ -0.36
NUP54-213ENST00000513352 PLEKHA1Q9HB21 404 aa12.78□□□□□ -0.36
NUP54-213ENST00000513352 CYSLTR2Q9NS75 346 aa12.78□□□□□ -0.36
NUP54-213ENST00000513352 CGGBP1Q9UFW8 167 aaPredicted RBP12.78□□□□□ -0.36
NUP54-213ENST00000513352 ANKRD17O75179 2603 aaKnown RBP12.77□□□□□ -0.36
NUP54-213ENST00000513352 ZSCAN5BA6NJL1 495 aa12.77□□□□□ -0.37
NUP54-213ENST00000513352 OR4C45A6NMZ5 311 aa12.77□□□□□ -0.37
NUP54-213ENST00000513352 MRPS14O60783 128 aaKnown RBP12.77□□□□□ -0.37
NUP54-213ENST00000513352 LILRA1O75019 489 aa12.77□□□□□ -0.37
NUP54-213ENST00000513352 DHRS3O75911 302 aa12.77□□□□□ -0.37
NUP54-213ENST00000513352 GNALP38405 381 aa12.77□□□□□ -0.37
NUP54-213ENST00000513352 LIPAP38571 399 aa12.77□□□□□ -0.37
NUP54-213ENST00000513352 DDOSTP39656 456 aa12.77□□□□□ -0.37
NUP54-213ENST00000513352 MMP15P51511 669 aa12.77□□□□□ -0.37
NUP54-213ENST00000513352 OR8G1Q15617 311 aa12.77□□□□□ -0.37
NUP54-213ENST00000513352 TBCEQ15813 527 aaPredicted RBP12.77□□□□□ -0.37
NUP54-213ENST00000513352 TSTQ16762 297 aaKnown RBP12.77□□□□□ -0.37
NUP54-213ENST00000513352 ZNF773Q6PK81 442 aa12.77□□□□□ -0.37
NUP54-213ENST00000513352 FTMTQ8N4E7 242 aa12.77□□□□□ -0.37
NUP54-213ENST00000513352 ZNF485Q8NCK3 441 aa12.77□□□□□ -0.37
NUP54-213ENST00000513352 CSNK2A3Q8NEV1 391 aa12.77□□□□□ -0.37
NUP54-213ENST00000513352 SEMA6DQ8NFY4 1073 aa12.77□□□□□ -0.37
NUP54-213ENST00000513352 OR2Z1Q8NG97 314 aa12.77□□□□□ -0.37
NUP54-213ENST00000513352 OR10AD1Q8NGE0 317 aa12.77□□□□□ -0.37
NUP54-213ENST00000513352 OR13C3Q8NGS6 347 aa12.77□□□□□ -0.37
NUP54-213ENST00000513352 TSEN15Q8WW01 171 aaKnown RBP12.77□□□□□ -0.37
NUP54-213ENST00000513352 ELMOD3Q96FG2 381 aa12.77□□□□□ -0.37
NUP54-213ENST00000513352 TRMT61AQ96FX7 289 aaKnown RBP12.77□□□□□ -0.37
NUP54-213ENST00000513352 PERPQ96FX8 193 aa12.77□□□□□ -0.37
NUP54-213ENST00000513352 ADAT1Q9BUB4 502 aaKnown RBP12.77□□□□□ -0.37
NUP54-213ENST00000513352 RAB1BQ9H0U4 201 aa12.77□□□□□ -0.37
NUP54-213ENST00000513352 TMEM100Q9NV29 134 aa12.77□□□□□ -0.37
NUP54-213ENST00000513352 PIGLQ9Y2B2 252 aa12.77□□□□□ -0.37
NUP54-213ENST00000513352 SIRT4Q9Y6E7 314 aaPredicted RBP12.77□□□□□ -0.37
NUP54-213ENST00000513352 POLQO75417 2590 aa12.76□□□□□ -0.37
NUP54-213ENST00000513352 APCP25054 2843 aa12.76□□□□□ -0.37
NUP54-213ENST00000513352 A0A1B0GTI1 187 aa12.76□□□□□ -0.37
NUP54-213ENST00000513352 C17orf100A8MU93 164 aa12.76□□□□□ -0.37
NUP54-213ENST00000513352 ZFPL1O95159 310 aa12.76□□□□□ -0.37
NUP54-213ENST00000513352 ATP6V1B1P15313 513 aa12.76□□□□□ -0.37
NUP54-213ENST00000513352 FAHP16930 419 aa12.76□□□□□ -0.37
NUP54-213ENST00000513352 ZNF20P17024 532 aa12.76□□□□□ -0.37
NUP54-213ENST00000513352 CELP19835 753 aa12.76□□□□□ -0.37
NUP54-213ENST00000513352 ACHEP22303 614 aa12.76□□□□□ -0.37
NUP54-213ENST00000513352 CA6P23280 308 aa12.76□□□□□ -0.37
NUP54-213ENST00000513352 TNFSF4P23510 183 aa12.76□□□□□ -0.37
NUP54-213ENST00000513352 ACKR3P25106 362 aa12.76□□□□□ -0.37
NUP54-213ENST00000513352 RIPPLY1Q0D2K3 151 aa12.76□□□□□ -0.37
NUP54-213ENST00000513352 OR8B8Q15620 311 aa12.76□□□□□ -0.37
NUP54-213ENST00000513352 Q6ZR03 302 aa12.76□□□□□ -0.37
NUP54-213ENST00000513352 ZNF367Q7RTV3 350 aa12.76□□□□□ -0.37
NUP54-213ENST00000513352 SPARTQ8N0X7 666 aa12.76□□□□□ -0.37
NUP54-213ENST00000513352 OR13G1Q8NGZ3 307 aa12.76□□□□□ -0.37
NUP54-213ENST00000513352 OR10AC1Q8NH08 325 aa12.76□□□□□ -0.37
NUP54-213ENST00000513352 PIGCQ92535 297 aa12.76□□□□□ -0.37
NUP54-213ENST00000513352 DVL3Q92997 716 aaPredicted RBP12.76□□□□□ -0.37
NUP54-213ENST00000513352 SMIM19Q96E16 107 aa12.76□□□□□ -0.37
NUP54-213ENST00000513352 SORCS2Q96PQ0 1159 aa12.76□□□□□ -0.37
NUP54-213ENST00000513352 ACOT13Q9NPJ3 140 aa12.76□□□□□ -0.37
NUP54-213ENST00000513352 DECR2Q9NUI1 292 aa12.76□□□□□ -0.37
NUP54-213ENST00000513352 HHLA2Q9UM44 414 aa12.76□□□□□ -0.37
NUP54-213ENST00000513352 LSM2Q9Y333 95 aaKnown RBP12.76□□□□□ -0.37
NUP54-213ENST00000513352 NOP16Q9Y3C1 178 aaKnown RBP12.76□□□□□ -0.37
NUP54-213ENST00000513352 RHBDD3Q9Y3P4 386 aa12.76□□□□□ -0.37
NUP54-213ENST00000513352 TACC2O95359 2948 aa12.76□□□□□ -0.37
NUP54-213ENST00000513352 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP12.75□□□□□ -0.37
NUP54-213ENST00000513352 ZNF816-ZNF321PA0A0X1KG74 233 aa12.75□□□□□ -0.37
NUP54-213ENST00000513352 LOC390937A0A1W2PQ73 354 aa12.75□□□□□ -0.37
NUP54-213ENST00000513352 A6NIN4 97 aa12.75□□□□□ -0.37
NUP54-213ENST00000513352 H7C417 338 aa12.75□□□□□ -0.37
NUP54-213ENST00000513352 OVOL3O00110 214 aa12.75□□□□□ -0.37
NUP54-213ENST00000513352 ARID1AO14497 2285 aa12.75□□□□□ -0.37
NUP54-213ENST00000513352 OGG1O15527 345 aa12.75□□□□□ -0.37
NUP54-213ENST00000513352 IGLV3-1P01715 115 aa12.75□□□□□ -0.37
NUP54-213ENST00000513352 IGHV1-46P01743 117 aa12.75□□□□□ -0.37
NUP54-213ENST00000513352 HLA-DPB1P04440 258 aa12.75□□□□□ -0.37
NUP54-213ENST00000513352 ZNF12P17014 697 aa12.75□□□□□ -0.37
NUP54-213ENST00000513352 MAGEB1P43366 347 aa12.75□□□□□ -0.37
NUP54-213ENST00000513352 ATP5J2P56134 94 aa12.75□□□□□ -0.37
NUP54-213ENST00000513352 CCL8P80075 99 aa12.75□□□□□ -0.37
NUP54-213ENST00000513352 EMX1Q04741 257 aaPredicted RBP12.75□□□□□ -0.37
NUP54-213ENST00000513352 TNK1Q13470 666 aa12.75□□□□□ -0.37
NUP54-213ENST00000513352 DOC2BQ14184 412 aa12.75□□□□□ -0.37
NUP54-213ENST00000513352 TSPAN14Q8NG11 270 aa12.75□□□□□ -0.37
NUP54-213ENST00000513352 OR8S1Q8NH09 359 aa12.75□□□□□ -0.37
NUP54-213ENST00000513352 UFD1Q92890 307 aa12.75□□□□□ -0.37
NUP54-213ENST00000513352 SLC30A2Q9BRI3 323 aa12.75□□□□□ -0.37
NUP54-213ENST00000513352 BEX4Q9NWD9 120 aaPredicted RBP12.75□□□□□ -0.37
NUP54-213ENST00000513352 MRPL15Q9P015 296 aaKnown RBP12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms