RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 OVCH2Q7RTZ1 564 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 TMEM251Q8N6I4 163 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 ZNF383Q8NA42 475 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 OR5T2Q8NGG2 359 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 OR4C15Q8NGM1 316 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 TSSK2Q96PF2 358 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 ZNF649Q9BS31 505 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 KCNK15Q9H427 330 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 CYSLTR2Q9NS75 346 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 IKZF2Q9UKS7 526 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 ZNF346Q9UL40 294 aaKnown RBP7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 MOKQ9UQ07 419 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 A0A087WUJ7 227 aa7.71□□□□□ -1.17
LIMCH1-209ENST00000509277 TRDV1A0A1B0GX56 115 aa7.71□□□□□ -1.17
LIMCH1-209ENST00000509277 PNMTP11086 282 aa7.71□□□□□ -1.17
LIMCH1-209ENST00000509277 AKR1C4P17516 323 aa7.71□□□□□ -1.17
LIMCH1-209ENST00000509277 MYBPHQ13203 477 aa7.71□□□□□ -1.17
LIMCH1-209ENST00000509277 ACTBL2Q562R1 376 aa7.71□□□□□ -1.17
LIMCH1-209ENST00000509277 ETFRF1Q6IPR1 90 aa7.71□□□□□ -1.17
LIMCH1-209ENST00000509277 CDPF1Q6NVV7 123 aa7.71□□□□□ -1.17
LIMCH1-209ENST00000509277 OR2W3Q7Z3T1 314 aa7.71□□□□□ -1.17
LIMCH1-209ENST00000509277 ZNF227Q86WZ6 799 aa7.71□□□□□ -1.17
LIMCH1-209ENST00000509277 LINC00471Q8N535 108 aa7.71□□□□□ -1.17
LIMCH1-209ENST00000509277 OR10D4PQ8NGN7 298 aa7.71□□□□□ -1.17
LIMCH1-209ENST00000509277 OR14K1Q8NGZ2 314 aa7.71□□□□□ -1.17
LIMCH1-209ENST00000509277 RFKQ969G6 155 aa7.71□□□□□ -1.17
LIMCH1-209ENST00000509277 DDIT4LQ96D03 193 aa7.71□□□□□ -1.17
LIMCH1-209ENST00000509277 ZNF845Q96IR2 970 aaPredicted RBP7.71□□□□□ -1.17
LIMCH1-209ENST00000509277 Q96M85 177 aa7.71□□□□□ -1.17
LIMCH1-209ENST00000509277 HS6ST2Q96MM7 605 aa7.71□□□□□ -1.17
LIMCH1-209ENST00000509277 UCN2Q96RP3 112 aa7.71□□□□□ -1.17
LIMCH1-209ENST00000509277 SLC6A7Q99884 636 aa7.71□□□□□ -1.17
LIMCH1-209ENST00000509277 EIF5A2Q9GZV4 153 aaKnown RBP7.71□□□□□ -1.17
LIMCH1-209ENST00000509277 EXOSC1Q9Y3B2 195 aaKnown RBP7.71□□□□□ -1.17
LIMCH1-209ENST00000509277 LIPGQ9Y5X9 500 aa7.71□□□□□ -1.17
LIMCH1-209ENST00000509277 TRAV18A0A075B6X5 111 aa7.71□□□□□ -1.18
LIMCH1-209ENST00000509277 TRBV2A0A0J9YWF9 115 aa7.71□□□□□ -1.18
LIMCH1-209ENST00000509277 A8MXK9 166 aa7.71□□□□□ -1.18
LIMCH1-209ENST00000509277 RPS27P42677 84 aaKnown RBP7.71□□□□□ -1.18
LIMCH1-209ENST00000509277 H2BFSP57053 126 aa7.71□□□□□ -1.18
LIMCH1-209ENST00000509277 SLC10A1Q14973 349 aa7.71□□□□□ -1.18
LIMCH1-209ENST00000509277 PLPPR5Q32ZL2 321 aa7.71□□□□□ -1.18
LIMCH1-209ENST00000509277 ALG10Q5BKT4 473 aa7.71□□□□□ -1.18
LIMCH1-209ENST00000509277 ZNF529Q6P280 563 aa7.71□□□□□ -1.18
LIMCH1-209ENST00000509277 ATG4DQ86TL0 474 aaPredicted RBP7.71□□□□□ -1.18
LIMCH1-209ENST00000509277 LURAP1LQ8IV03 231 aa7.71□□□□□ -1.18
LIMCH1-209ENST00000509277 MISPQ8IVT2 679 aa7.71□□□□□ -1.18
LIMCH1-209ENST00000509277 CMTM4Q8IZR5 234 aa7.71□□□□□ -1.18
LIMCH1-209ENST00000509277 SYNPRQ8TBG9 265 aa7.71□□□□□ -1.18
LIMCH1-209ENST00000509277 AKR1E2Q96JD6 320 aa7.71□□□□□ -1.18
LIMCH1-209ENST00000509277 NAA11Q9BSU3 229 aaPredicted RBP7.71□□□□□ -1.18
LIMCH1-209ENST00000509277 PRR14LQ5THK1 2151 aa7.71□□□□□ -1.18
LIMCH1-209ENST00000509277 FREM1Q5H8C1 2179 aa7.71□□□□□ -1.18
LIMCH1-209ENST00000509277 AKAP6Q13023 2319 aa7.71□□□□□ -1.18
LIMCH1-209ENST00000509277 COL12A1Q99715 3063 aa7.71□□□□□ -1.18
LIMCH1-209ENST00000509277 C7orf66A4D0T2 115 aa7.71□□□□□ -1.18
LIMCH1-209ENST00000509277 A8MVM7 634 aa7.71□□□□□ -1.18
LIMCH1-209ENST00000509277 GPR37O15354 613 aa7.71□□□□□ -1.18
LIMCH1-209ENST00000509277 ST8SIA5O15466 376 aa7.71□□□□□ -1.18
LIMCH1-209ENST00000509277 SNAPINO95295 136 aa7.71□□□□□ -1.18
LIMCH1-209ENST00000509277 FGF2P09038 288 aa7.71□□□□□ -1.18
LIMCH1-209ENST00000509277 UBCP0CG48 685 aaKnown RBP7.71□□□□□ -1.18
LIMCH1-209ENST00000509277 HLA-DOBP13765 273 aa7.71□□□□□ -1.18
LIMCH1-209ENST00000509277 MNDAP41218 407 aa7.71□□□□□ -1.18
LIMCH1-209ENST00000509277 TNFSF10P50591 281 aa7.71□□□□□ -1.18
LIMCH1-209ENST00000509277 PRKXP51817 358 aa7.71□□□□□ -1.18
LIMCH1-209ENST00000509277 TMPRSS3P57727 454 aa7.71□□□□□ -1.18
LIMCH1-209ENST00000509277 C3orf33Q6P1S2 294 aa7.71□□□□□ -1.18
LIMCH1-209ENST00000509277 ZNF585AQ6P3V2 769 aa7.71□□□□□ -1.18
LIMCH1-209ENST00000509277 GCNT2Q8N0V5 402 aa7.71□□□□□ -1.18
LIMCH1-209ENST00000509277 ABHD4Q8TB40 342 aa7.71□□□□□ -1.18
LIMCH1-209ENST00000509277 HOXB13Q92826 284 aaPredicted RBP7.71□□□□□ -1.18
LIMCH1-209ENST00000509277 POP5Q969H6 163 aaKnown RBP7.71□□□□□ -1.18
LIMCH1-209ENST00000509277 ANGPTL4Q9BY76 406 aa7.71□□□□□ -1.18
LIMCH1-209ENST00000509277 TRAV17A0A0B4J275 112 aa7.7□□□□□ -1.18
LIMCH1-209ENST00000509277 A0A1W2PPH5 198 aa7.7□□□□□ -1.18
LIMCH1-209ENST00000509277 A0A1W2PQD3 144 aa7.7□□□□□ -1.18
LIMCH1-209ENST00000509277 TMEM218A2RU14 115 aa7.7□□□□□ -1.18
LIMCH1-209ENST00000509277 SLC33A1O00400 549 aaPredicted RBP7.7□□□□□ -1.18
LIMCH1-209ENST00000509277 XKRYO14609 159 aa7.7□□□□□ -1.18
LIMCH1-209ENST00000509277 EFNA2O43921 213 aa7.7□□□□□ -1.18
LIMCH1-209ENST00000509277 TGM6O95932 706 aa7.7□□□□□ -1.18
LIMCH1-209ENST00000509277 CYC1P08574 325 aa7.7□□□□□ -1.18
LIMCH1-209ENST00000509277 DSCR4P56555 118 aaPredicted RBP7.7□□□□□ -1.18
LIMCH1-209ENST00000509277 S100A12P80511 92 aa7.7□□□□□ -1.18
LIMCH1-209ENST00000509277 BAMBIQ13145 260 aa7.7□□□□□ -1.18
LIMCH1-209ENST00000509277 TRAM1Q15629 374 aa7.7□□□□□ -1.18
LIMCH1-209ENST00000509277 RNFT1Q5M7Z0 435 aa7.7□□□□□ -1.18
LIMCH1-209ENST00000509277 FNDC7Q5VTL7 733 aa7.7□□□□□ -1.18
LIMCH1-209ENST00000509277 MAMDC2Q7Z304 686 aaPredicted RBP7.7□□□□□ -1.18
LIMCH1-209ENST00000509277 P4HA3Q7Z4N8 544 aa7.7□□□□□ -1.18
LIMCH1-209ENST00000509277 MUC20Q8N307 709 aaPredicted RBP7.7□□□□□ -1.18
LIMCH1-209ENST00000509277 OSTF1Q92882 214 aa7.7□□□□□ -1.18
LIMCH1-209ENST00000509277 NMNAT3Q96T66 252 aa7.7□□□□□ -1.18
LIMCH1-209ENST00000509277 SEC61A2Q9H9S3 476 aa7.7□□□□□ -1.18
LIMCH1-209ENST00000509277 PROK2Q9HC23 129 aa7.7□□□□□ -1.18
LIMCH1-209ENST00000509277 HINT3Q9NQE9 182 aaKnown RBP7.7□□□□□ -1.18
LIMCH1-209ENST00000509277 KLHL9Q9P2J3 617 aa7.7□□□□□ -1.18
LIMCH1-209ENST00000509277 GRHPRQ9UBQ7 328 aa7.7□□□□□ -1.18
LIMCH1-209ENST00000509277 PUS1Q9Y606 427 aaKnown RBP eCLIP7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms