RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 GNRHR2Q96P88 292 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 SCGB3A2Q96PL1 93 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 TNFRSF13CQ96RJ3 184 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 SERINC2Q96SA4 455 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 OR8D2Q9GZM6 311 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 FKRPQ9H9S5 495 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 SIRT7Q9NRC8 400 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 CD2P06729 351 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 CD80P33681 288 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 PMPCAQ10713 525 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 SKP2Q13309 424 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 EIF2B1Q14232 305 aaKnown RBP4.76□□□□□ -1.65
SYNE1-220ENST00000471834 SLC17A1Q14916 467 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 C9orf50Q5SZB4 431 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 FIGLAQ6QHK4 219 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 ADGRE4PQ86SQ3 457 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 ZNF546Q86UE3 836 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 OR5AR1Q8NGP9 310 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 MRPL24Q96A35 216 aaKnown RBP4.76□□□□□ -1.65
SYNE1-220ENST00000471834 TSPAN10Q9H1Z9 355 aaPredicted RBP4.76□□□□□ -1.65
SYNE1-220ENST00000471834 TM7SF3Q9NS93 570 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 DCAF16Q9NXF7 216 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 PIKFYVEQ9Y2I7 2098 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 HSPB6O14558 160 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 IL18BPO95998 194 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 HIST1H1CP16403 213 aaKnown RBP4.76□□□□□ -1.65
SYNE1-220ENST00000471834 CERS1P27544 350 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 CDKN2AP42771 156 aaKnown RBP4.76□□□□□ -1.65
SYNE1-220ENST00000471834 POU3F4P49335 361 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 MNX1P50219 401 aaPredicted RBP4.76□□□□□ -1.65
SYNE1-220ENST00000471834 ZNF117Q03924 483 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 ZFP36L1Q07352 338 aaKnown RBP4.76□□□□□ -1.65
SYNE1-220ENST00000471834 ERV3-1Q14264 604 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 LY6G5CQ5SRR4 150 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 DCAF12Q5T6F0 453 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 GPR157Q5UAW9 335 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 KIAA0895LQ68EN5 471 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 TGIF2LYQ8IUE0 185 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 ZNF584Q8IVC4 421 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 NUP37Q8NFH4 326 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 PPP1R1CQ8WVI7 109 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 FAM3DQ96BQ1 224 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 ZNF75AQ96N20 296 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 G6PC3Q9BUM1 346 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 CHST6Q9GZX3 395 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 LPAR5Q9H1C0 372 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 ASF1BQ9NVP2 202 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 ELOA3CA0A087WX78 387 aaPredicted RBP4.75□□□□□ -1.65
SYNE1-220ENST00000471834 DCDC2BA2VCK2 349 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 OPN1LWP04000 364 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 ZNF14P17017 642 aaPredicted RBP4.75□□□□□ -1.65
SYNE1-220ENST00000471834 NPBWR2P48146 333 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 CCL11P51671 97 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 FXYD4P59646 89 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 RPS23P62266 143 aaKnown RBP4.75□□□□□ -1.65
SYNE1-220ENST00000471834 BTG2P78543 158 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 TRMT12Q53H54 448 aaKnown RBP4.75□□□□□ -1.65
SYNE1-220ENST00000471834 NAA40Q86UY6 237 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 ZNF619Q8N2I2 560 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 TERB2Q8NHR7 220 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 ZPLD1Q8TCW7 415 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 NINJ1Q92982 152 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 TMEM106AQ96A25 262 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 SLC25A44Q96H78 314 aaPredicted RBP4.75□□□□□ -1.65
SYNE1-220ENST00000471834 SULT4A1Q9BR01 284 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 NRSN2Q9GZP1 204 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 FBRSQ9HAH7 460 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 MRPL22Q9NWU5 206 aaKnown RBP4.75□□□□□ -1.65
SYNE1-220ENST00000471834 TP53I11O14683 189 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 MSTNO14793 375 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 LPAR6P43657 344 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 NUBP1P53384 320 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 OR51S1Q8NGJ8 323 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 OR13C5Q8NGS8 318 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 OR13C2Q8NGS9 318 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 NPRL2Q8WTW4 380 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 PGAM5Q96HS1 289 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 PDCD1LG2Q9BQ51 273 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 ALG12Q9BV10 488 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 SLC25A18Q9H1K4 315 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 HCFC1R1Q9NWW0 138 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 R4GN57 208 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 ZNF732B4DXR9 585 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 SFT2D2O95562 160 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 MC2RQ01718 297 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 HIKESHIQ53FT3 197 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 MRPL2Q5T653 305 aaKnown RBP4.75□□□□□ -1.65
SYNE1-220ENST00000471834 TMPRSS12Q86WS5 348 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 OR10AC1Q8NH08 325 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 PAQR8Q8TEZ7 354 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 SMARCD2Q92925 531 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 MICU1Q9BPX6 476 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 SAV1Q9H4B6 383 aaPredicted RBP4.75□□□□□ -1.65
SYNE1-220ENST00000471834 KLHDC2Q9Y2U9 406 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 TMIGD3P0DMS9 266 aaPredicted RBP4.75□□□□□ -1.65
SYNE1-220ENST00000471834 VSIG8P0DPA2 414 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 ANXA7P20073 488 aaKnown RBP4.75□□□□□ -1.65
SYNE1-220ENST00000471834 GABRR1P24046 479 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 RSU1Q15404 277 aa4.75□□□□□ -1.65
SYNE1-220ENST00000471834 MESTQ5EB52 335 aa4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms