RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 THBS4P35443 961 aa16.06■□□□□ 0.16
CLN3-206ENST00000360019 ADORA2A-AS1P86434 159 aa16.06■□□□□ 0.16
CLN3-206ENST00000360019 HLXQ14774 488 aaPredicted RBP16.06■□□□□ 0.16
CLN3-206ENST00000360019 DDI2Q5TDH0 399 aa16.06■□□□□ 0.16
CLN3-206ENST00000360019 PGAP1Q75T13 922 aa16.06■□□□□ 0.16
CLN3-206ENST00000360019 LYPD6Q86Y78 171 aa16.06■□□□□ 0.16
CLN3-206ENST00000360019 OR5AS1Q8N127 324 aa16.06■□□□□ 0.16
CLN3-206ENST00000360019 C10orf35Q96D05 121 aa16.06■□□□□ 0.16
CLN3-206ENST00000360019 REPIN1Q9BWE0 567 aaKnown RBP16.06■□□□□ 0.16
CLN3-206ENST00000360019 CDH20Q9HBT6 801 aa16.06■□□□□ 0.16
CLN3-206ENST00000360019 PTTG3PQ9NZH4 202 aa16.06■□□□□ 0.16
CLN3-206ENST00000360019 C16orf97H3BN30 126 aa16.05■□□□□ 0.16
CLN3-206ENST00000360019 SULT1B1O43704 296 aa16.05■□□□□ 0.16
CLN3-206ENST00000360019 CD37P11049 281 aa16.05■□□□□ 0.16
CLN3-206ENST00000360019 ZNF35P13682 527 aa16.05■□□□□ 0.16
CLN3-206ENST00000360019 SNRPBP14678 240 aaKnown RBP16.05■□□□□ 0.16
CLN3-206ENST00000360019 RAB3AP20336 220 aa16.05■□□□□ 0.16
CLN3-206ENST00000360019 CFPP27918 469 aa16.05■□□□□ 0.16
CLN3-206ENST00000360019 BDKRB2P30411 391 aa16.05■□□□□ 0.16
CLN3-206ENST00000360019 TNFSF8P32971 234 aa16.05■□□□□ 0.16
CLN3-206ENST00000360019 PSMD7P51665 324 aa16.05■□□□□ 0.16
CLN3-206ENST00000360019 CLDN12P56749 244 aa16.05■□□□□ 0.16
CLN3-206ENST00000360019 PPA1Q15181 289 aa16.05■□□□□ 0.16
CLN3-206ENST00000360019 CHST5Q9GZS9 411 aa16.05■□□□□ 0.16
CLN3-206ENST00000360019 TMEM138Q9NPI0 162 aa16.05■□□□□ 0.16
CLN3-206ENST00000360019 NPAP1Q9NZP6 1156 aa16.05■□□□□ 0.16
CLN3-206ENST00000360019 IGKV1-9A0A0C4DH69 117 aa16.05■□□□□ 0.16
CLN3-206ENST00000360019 MEGF11A6BM72 1044 aa16.05■□□□□ 0.16
CLN3-206ENST00000360019 HPGDSO60760 199 aa16.05■□□□□ 0.16
CLN3-206ENST00000360019 FAM157BP0CG42 384 aa16.05■□□□□ 0.16
CLN3-206ENST00000360019 MAP2K3P46734 347 aa16.05■□□□□ 0.16
CLN3-206ENST00000360019 RIPPLY1Q0D2K3 151 aa16.05■□□□□ 0.16
CLN3-206ENST00000360019 MALLQ13021 153 aa16.05■□□□□ 0.16
CLN3-206ENST00000360019 DMRTC1Q5HYR2 192 aa16.05■□□□□ 0.16
CLN3-206ENST00000360019 MZT2AQ6P582 158 aa16.05■□□□□ 0.16
CLN3-206ENST00000360019 CCDC190Q86UF4 302 aa16.05■□□□□ 0.16
CLN3-206ENST00000360019 NKAIN3Q8N8D7 197 aa16.05■□□□□ 0.16
CLN3-206ENST00000360019 OR52N4Q8NGI2 321 aa16.05■□□□□ 0.16
CLN3-206ENST00000360019 OR5H6Q8NGV6 325 aa16.05■□□□□ 0.16
CLN3-206ENST00000360019 TRMT10AQ8TBZ6 339 aaKnown RBP16.05■□□□□ 0.16
CLN3-206ENST00000360019 PP6455Q8WZ26 134 aa16.05■□□□□ 0.16
CLN3-206ENST00000360019 WDFY2Q96P53 400 aa16.05■□□□□ 0.16
CLN3-206ENST00000360019 LIN7BQ9HAP6 207 aa16.05■□□□□ 0.16
CLN3-206ENST00000360019 ABRACLQ9P1F3 81 aa16.05■□□□□ 0.16
CLN3-206ENST00000360019 CGGBP1Q9UFW8 167 aaPredicted RBP16.05■□□□□ 0.16
CLN3-206ENST00000360019 ESPL1Q14674 2120 aa16.05■□□□□ 0.16
CLN3-206ENST00000360019 CLDN25C9JDP6 229 aa16.04■□□□□ 0.16
CLN3-206ENST00000360019 J3QW42 95 aa16.04■□□□□ 0.16
CLN3-206ENST00000360019 CHRNB4P30926 498 aa16.04■□□□□ 0.16
CLN3-206ENST00000360019 DYNC1I2Q13409 638 aaKnown RBP16.04■□□□□ 0.16
CLN3-206ENST00000360019 UBE2V2Q15819 145 aa16.04■□□□□ 0.16
CLN3-206ENST00000360019 GLT8D1Q68CQ7 371 aa16.04■□□□□ 0.16
CLN3-206ENST00000360019 FAM166AQ6J272 317 aa16.04■□□□□ 0.16
CLN3-206ENST00000360019 ALKBH2Q6NS38 261 aa16.04■□□□□ 0.16
CLN3-206ENST00000360019 SEZ6L2Q6UXD5 910 aa16.04■□□□□ 0.16
CLN3-206ENST00000360019 MUCL1Q96DR8 90 aa16.04■□□□□ 0.16
CLN3-206ENST00000360019 CCDC120Q96HB5 630 aa16.04■□□□□ 0.16
CLN3-206ENST00000360019 PLGRKTQ9HBL7 147 aa16.04■□□□□ 0.16
CLN3-206ENST00000360019 RHBDD3Q9Y3P4 386 aa16.04■□□□□ 0.16
CLN3-206ENST00000360019 HIVEP3Q5T1R4 2406 aa16.04■□□□□ 0.16
CLN3-206ENST00000360019 ETV6P41212 452 aa16.03■□□□□ 0.16
CLN3-206ENST00000360019 ZNF83P51522 516 aa16.03■□□□□ 0.16
CLN3-206ENST00000360019 SPATA46Q5T0L3 261 aa16.03■□□□□ 0.16
CLN3-206ENST00000360019 UTS2BQ765I0 119 aa16.03■□□□□ 0.16
CLN3-206ENST00000360019 MRPL21Q7Z2W9 205 aaKnown RBP16.03■□□□□ 0.16
CLN3-206ENST00000360019 RNF144BQ7Z419 303 aa16.03■□□□□ 0.16
CLN3-206ENST00000360019 LGALS14Q8TCE9 139 aa16.03■□□□□ 0.16
CLN3-206ENST00000360019 S100ZQ8WXG8 99 aa16.03■□□□□ 0.16
CLN3-206ENST00000360019 CEP19Q96LK0 163 aa16.03■□□□□ 0.16
CLN3-206ENST00000360019 MOV10Q9HCE1 1003 aaKnown RBP16.03■□□□□ 0.16
CLN3-206ENST00000360019 HMG20AQ9NP66 347 aa16.03■□□□□ 0.16
CLN3-206ENST00000360019 EIF3KQ9UBQ5 218 aaKnown RBP16.03■□□□□ 0.16
CLN3-206ENST00000360019 STEAP1Q9UHE8 339 aa16.03■□□□□ 0.16
CLN3-206ENST00000360019 DIDO1Q9BTC0 2240 aaKnown RBP16.03■□□□□ 0.16
CLN3-206ENST00000360019 IGHV2OR16-5A0A0B4J2B6 119 aa16.03■□□□□ 0.16
CLN3-206ENST00000360019 SLC17A2O00624 439 aa16.03■□□□□ 0.16
CLN3-206ENST00000360019 TMEM127O75204 238 aa16.03■□□□□ 0.16
CLN3-206ENST00000360019 CALCRP30988 508 aa16.03■□□□□ 0.16
CLN3-206ENST00000360019 UCP2P55851 309 aa16.03■□□□□ 0.16
CLN3-206ENST00000360019 TMEM42Q69YG0 159 aa16.03■□□□□ 0.16
CLN3-206ENST00000360019 JAGN1Q8N5M9 183 aa16.03■□□□□ 0.16
CLN3-206ENST00000360019 OR56B2PQ8NGI1 322 aa16.03■□□□□ 0.16
CLN3-206ENST00000360019 OR5L1Q8NGL2 311 aa16.03■□□□□ 0.16
CLN3-206ENST00000360019 ZNF671Q8TAW3 534 aa16.03■□□□□ 0.16
CLN3-206ENST00000360019 OPA3Q9H6K4 179 aa16.03■□□□□ 0.16
CLN3-206ENST00000360019 PPP1R3EQ9H7J1 279 aa16.03■□□□□ 0.16
CLN3-206ENST00000360019 J3QRK9 145 aa16.02■□□□□ 0.16
CLN3-206ENST00000360019 UQCRFS1P47985 274 aa16.02■□□□□ 0.16
CLN3-206ENST00000360019 ASCL1P50553 236 aa16.02■□□□□ 0.16
CLN3-206ENST00000360019 ERVS71-1P61550 626 aa16.02■□□□□ 0.16
CLN3-206ENST00000360019 TLE1Q04724 770 aa16.02■□□□□ 0.16
CLN3-206ENST00000360019 C3orf36Q3SXR2 165 aa16.02■□□□□ 0.16
CLN3-206ENST00000360019 C1QTNF12Q5T7M4 302 aa16.02■□□□□ 0.16
CLN3-206ENST00000360019 SAMD12Q8N8I0 201 aa16.02■□□□□ 0.16
CLN3-206ENST00000360019 SSC4DQ8WTU2 575 aa16.02■□□□□ 0.16
CLN3-206ENST00000360019 SLC25A28Q96A46 364 aa16.02■□□□□ 0.16
CLN3-206ENST00000360019 BBC3Q96PG8 261 aaPredicted RBP16.02■□□□□ 0.16
CLN3-206ENST00000360019 SPACA5Q96QH8 159 aa16.02■□□□□ 0.16
CLN3-206ENST00000360019 USB1Q9BQ65 265 aaKnown RBP16.02■□□□□ 0.16
CLN3-206ENST00000360019 METTL17Q9H7H0 456 aaPredicted RBP16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms