RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 COA4Q9NYJ1 87 aa7.73□□□□□ -1.17
LIMCH1-209ENST00000509277 WASF3Q9UPY6 502 aa7.73□□□□□ -1.17
LIMCH1-209ENST00000509277 IER3IP1Q9Y5U9 82 aa7.73□□□□□ -1.17
LIMCH1-209ENST00000509277 A0A1W2PPE3 182 aa7.73□□□□□ -1.17
LIMCH1-209ENST00000509277 KLRC4-KLRK1H3BQV0 150 aa7.73□□□□□ -1.17
LIMCH1-209ENST00000509277 WRBO00258 174 aa7.73□□□□□ -1.17
LIMCH1-209ENST00000509277 WISP2O76076 250 aa7.73□□□□□ -1.17
LIMCH1-209ENST00000509277 ADAP00813 363 aa7.73□□□□□ -1.17
LIMCH1-209ENST00000509277 NME2P22392 152 aa7.73□□□□□ -1.17
LIMCH1-209ENST00000509277 SDHAP31040 664 aa7.73□□□□□ -1.17
LIMCH1-209ENST00000509277 POLR2HP52434 150 aaKnown RBP7.73□□□□□ -1.17
LIMCH1-209ENST00000509277 CTXN1P60606 82 aa7.73□□□□□ -1.17
LIMCH1-209ENST00000509277 PLEKHN1Q494U1 663 aaPredicted RBP7.73□□□□□ -1.17
LIMCH1-209ENST00000509277 C9orf135Q5VTT2 229 aa7.73□□□□□ -1.17
LIMCH1-209ENST00000509277 MBOAT2Q6ZWT7 520 aa7.73□□□□□ -1.17
LIMCH1-209ENST00000509277 FAM122BQ7Z309 247 aa7.73□□□□□ -1.17
LIMCH1-209ENST00000509277 GRINAQ7Z429 371 aa7.73□□□□□ -1.17
LIMCH1-209ENST00000509277 CD163Q86VB7 1156 aa7.73□□□□□ -1.17
LIMCH1-209ENST00000509277 CISD2Q8N5K1 135 aaKnown RBP7.73□□□□□ -1.17
LIMCH1-209ENST00000509277 FAM24BQ8N5W8 94 aa7.73□□□□□ -1.17
LIMCH1-209ENST00000509277 ACBD7Q8N6N7 88 aa7.73□□□□□ -1.17
LIMCH1-209ENST00000509277 ZNF565Q8N9K5 539 aa7.73□□□□□ -1.17
LIMCH1-209ENST00000509277 RNASE11Q8TAA1 199 aaKnown RBP7.73□□□□□ -1.17
LIMCH1-209ENST00000509277 ZNF417Q8TAU3 575 aa7.73□□□□□ -1.17
LIMCH1-209ENST00000509277 GNPDA2Q8TDQ7 276 aa7.73□□□□□ -1.17
LIMCH1-209ENST00000509277 TCTEX1D2Q8WW35 142 aa7.73□□□□□ -1.17
LIMCH1-209ENST00000509277 ROBO4Q8WZ75 1007 aa7.73□□□□□ -1.17
LIMCH1-209ENST00000509277 GHSRQ92847 366 aa7.73□□□□□ -1.17
LIMCH1-209ENST00000509277 ZMYND19Q96E35 227 aaPredicted RBP7.73□□□□□ -1.17
LIMCH1-209ENST00000509277 ZNF587Q96SQ5 575 aaPredicted RBP7.73□□□□□ -1.17
LIMCH1-209ENST00000509277 PRSS27Q9BQR3 290 aa7.73□□□□□ -1.17
LIMCH1-209ENST00000509277 POLDIP3Q9BY77 421 aaKnown RBP7.73□□□□□ -1.17
LIMCH1-209ENST00000509277 HRASLSQ9HDD0 168 aa7.73□□□□□ -1.17
LIMCH1-209ENST00000509277 TRIM36Q9NQ86 728 aa7.73□□□□□ -1.17
LIMCH1-209ENST00000509277 DNAJB11Q9UBS4 358 aa7.73□□□□□ -1.17
LIMCH1-209ENST00000509277 ZNF629Q9UEG4 869 aaPredicted RBP7.73□□□□□ -1.17
LIMCH1-209ENST00000509277 MMP24Q9Y5R2 645 aa7.73□□□□□ -1.17
LIMCH1-209ENST00000509277 COL27A1Q8IZC6 1860 aaPredicted RBP7.73□□□□□ -1.17
LIMCH1-209ENST00000509277 NBEAQ8NFP9 2946 aa7.73□□□□□ -1.17
LIMCH1-209ENST00000509277 TNFSF12-TNFSF13A0A0A6YY99 330 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 M0QYG6 137 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 TNFSF12O43508 249 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 CXCL13O43927 109 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 EIF1BO60739 113 aaKnown RBP7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 SC5DO75845 299 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 SEMG1P04279 462 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 ATF1P18846 271 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 EIF1P41567 113 aaKnown RBP7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 EIF2B1Q14232 305 aaKnown RBP7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 EEF1A1P5Q5VTE0 462 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 C1orf140Q5VVS0 124 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 ZNF660Q6AZW8 331 aaPredicted RBP7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 HBMQ6B0K9 141 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 DMRTC2Q8IXT2 367 aaPredicted RBP7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 TMEM178AQ8NBL3 297 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 UBAC2Q8NBM4 344 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 SLAMF9Q96A28 289 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 RASD2Q96D21 266 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 CNTNAP3BQ96NU0 1288 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 CRLF2Q9HC73 371 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 SRA1Q9HD15 236 aaKnown RBP7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 ACKR4Q9NPB9 350 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 KLF13Q9Y2Y9 288 aaPredicted RBP7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 ACOT7O00154 380 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 IMPA2O14732 288 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 CYTIPO60759 359 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 KRT33AO76009 404 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 QDPRP09417 244 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 RAP2BP61225 183 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 GUCA2AQ02747 115 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 POU3F1Q03052 451 aaPredicted RBP7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 ZNF616Q08AN1 781 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 JMJD6Q6NYC1 403 aaPredicted RBP7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 THSD4Q6ZMP0 1018 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 OR52E2Q8NGJ4 325 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 OR51S1Q8NGJ8 323 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 GLYATL2Q8WU03 294 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 MARVELD3Q96A59 401 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 INTS12Q96CB8 462 aaKnown RBP7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 CLCC1Q96S66 551 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 FAM173AQ9BQD7 235 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 TTTY12Q9BZ98 90 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 CHST6Q9GZX3 395 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 ZFP57Q9NU63 452 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 MED29Q9NX70 200 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 LSM2Q9Y333 95 aaKnown RBP7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 PCSK5Q92824 1860 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 ANKUB1A6NFN9 424 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 PHOX2AO14813 284 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 CBR3O75828 277 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 EDN3P14138 238 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 CNR1P21554 472 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 BTCP35070 178 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 PTGDSP41222 190 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 CCR9P51686 369 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 DLX5P56178 289 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 S100A10P60903 97 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 PITPNAQ00169 270 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 MFAP5Q13361 173 aa7.72□□□□□ -1.17
LIMCH1-209ENST00000509277 OR7E24Q6IFN5 339 aa7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms