RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 GYPBP06028 91 aa13.8□□□□□ -0.2
CCDC28B-204ENST00000469003 SPI1P17947 270 aa13.8□□□□□ -0.2
CCDC28B-204ENST00000469003 NPY4RP50391 375 aa13.8□□□□□ -0.2
CCDC28B-204ENST00000469003 PRKXP51817 358 aa13.8□□□□□ -0.2
CCDC28B-204ENST00000469003 PPP1R8Q12972 351 aaKnown RBP13.8□□□□□ -0.2
CCDC28B-204ENST00000469003 TAF13Q15543 124 aa13.8□□□□□ -0.2
CCDC28B-204ENST00000469003 KCNJ8Q15842 424 aa13.8□□□□□ -0.2
CCDC28B-204ENST00000469003 MICAQ29983 383 aa13.8□□□□□ -0.2
CCDC28B-204ENST00000469003 OR2T5Q6IEZ7 315 aa13.8□□□□□ -0.2
CCDC28B-204ENST00000469003 LCN8Q6JVE9 175 aa13.8□□□□□ -0.2
CCDC28B-204ENST00000469003 SPERTQ8NA61 448 aa13.8□□□□□ -0.2
CCDC28B-204ENST00000469003 ZNF511Q8NB15 262 aa13.8□□□□□ -0.2
CCDC28B-204ENST00000469003 OR2T33Q8NG76 320 aa13.8□□□□□ -0.2
CCDC28B-204ENST00000469003 OR2T29Q8NH02 315 aa13.8□□□□□ -0.2
CCDC28B-204ENST00000469003 SLAMF6Q96DU3 332 aa13.8□□□□□ -0.2
CCDC28B-204ENST00000469003 CENPMQ9NSP4 180 aa13.8□□□□□ -0.2
CCDC28B-204ENST00000469003 VNN3Q9NY84 501 aa13.8□□□□□ -0.2
CCDC28B-204ENST00000469003 SAMHD1Q9Y3Z3 626 aaKnown RBP13.8□□□□□ -0.2
CCDC28B-204ENST00000469003 XRCC2O43543 280 aa13.79□□□□□ -0.2
CCDC28B-204ENST00000469003 ENSAO43768 121 aaKnown RBP13.79□□□□□ -0.2
CCDC28B-204ENST00000469003 SOX14O95416 240 aa13.79□□□□□ -0.2
CCDC28B-204ENST00000469003 IFNGP01579 166 aa13.79□□□□□ -0.2
CCDC28B-204ENST00000469003 BLVRAP53004 296 aa13.79□□□□□ -0.2
CCDC28B-204ENST00000469003 FGF12P61328 243 aa13.79□□□□□ -0.2
CCDC28B-204ENST00000469003 MZT1Q08AG7 82 aa13.79□□□□□ -0.2
CCDC28B-204ENST00000469003 SLC9A3R2Q15599 337 aa13.79□□□□□ -0.2
CCDC28B-204ENST00000469003 DHFR2Q86XF0 187 aa13.79□□□□□ -0.2
CCDC28B-204ENST00000469003 OR56B2PQ8NGI1 322 aa13.79□□□□□ -0.2
CCDC28B-204ENST00000469003 OR6K6Q8NGW6 343 aa13.79□□□□□ -0.2
CCDC28B-204ENST00000469003 SPSB4Q96A44 273 aa13.79□□□□□ -0.2
CCDC28B-204ENST00000469003 MMADHCQ9H3L0 296 aaPredicted RBP13.79□□□□□ -0.2
CCDC28B-204ENST00000469003 REEP1Q9H902 201 aa13.79□□□□□ -0.2
CCDC28B-204ENST00000469003 TRIM36Q9NQ86 728 aa13.79□□□□□ -0.2
CCDC28B-204ENST00000469003 ARMC1Q9NVT9 282 aa13.79□□□□□ -0.2
CCDC28B-204ENST00000469003 CTSZQ9UBR2 303 aa13.79□□□□□ -0.2
CCDC28B-204ENST00000469003 SOX21Q9Y651 276 aaPredicted RBP13.79□□□□□ -0.2
CCDC28B-204ENST00000469003 U3KQV3 271 aa13.79□□□□□ -0.2
CCDC28B-204ENST00000469003 TRAV38-1A0A0B4J264 116 aa13.78□□□□□ -0.2
CCDC28B-204ENST00000469003 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.78□□□□□ -0.2
CCDC28B-204ENST00000469003 RIIAD1A6NNX1 92 aa13.78□□□□□ -0.2
CCDC28B-204ENST00000469003 C22orf46C9J442 243 aa13.78□□□□□ -0.2
CCDC28B-204ENST00000469003 CLUP10909 449 aa13.78□□□□□ -0.2
CCDC28B-204ENST00000469003 SLC2A1P11166 492 aa13.78□□□□□ -0.2
CCDC28B-204ENST00000469003 DDOSTP39656 456 aa13.78□□□□□ -0.2
CCDC28B-204ENST00000469003 SLC15A1P46059 708 aa13.78□□□□□ -0.2
CCDC28B-204ENST00000469003 BPIFB3P59826 476 aa13.78□□□□□ -0.2
CCDC28B-204ENST00000469003 GRB2P62993 217 aaKnown RBP13.78□□□□□ -0.2
CCDC28B-204ENST00000469003 HOXA4Q00056 320 aaPredicted RBP13.78□□□□□ -0.2
CCDC28B-204ENST00000469003 TRIM25Q14258 630 aaKnown RBP13.78□□□□□ -0.2
CCDC28B-204ENST00000469003 FAM98BQ52LJ0 330 aaKnown RBP13.78□□□□□ -0.2
CCDC28B-204ENST00000469003 CD276Q5ZPR3 534 aa13.78□□□□□ -0.2
CCDC28B-204ENST00000469003 SFRP4Q6FHJ7 346 aaPredicted RBP13.78□□□□□ -0.2
CCDC28B-204ENST00000469003 SHISA2Q6UWI4 295 aa13.78□□□□□ -0.2
CCDC28B-204ENST00000469003 BOLLQ8N9W6 283 aaKnown RBP13.78□□□□□ -0.2
CCDC28B-204ENST00000469003 NSL1Q96IY1 281 aa13.78□□□□□ -0.2
CCDC28B-204ENST00000469003 ERVK-18Q9QC07 812 aa13.78□□□□□ -0.2
CCDC28B-204ENST00000469003 N6AMT1Q9Y5N5 214 aa13.78□□□□□ -0.2
CCDC28B-204ENST00000469003 DHRS12A0PJE2 317 aa13.77□□□□□ -0.21
CCDC28B-204ENST00000469003 OOEPA6NGQ2 149 aa13.77□□□□□ -0.21
CCDC28B-204ENST00000469003 C3orf80F5H4A9 247 aa13.77□□□□□ -0.21
CCDC28B-204ENST00000469003 TNFRSF13BO14836 293 aaPredicted RBP13.77□□□□□ -0.21
CCDC28B-204ENST00000469003 NDUFA2O43678 99 aa13.77□□□□□ -0.21
CCDC28B-204ENST00000469003 ZNF3P17036 446 aa13.77□□□□□ -0.21
CCDC28B-204ENST00000469003 IL13RA1P78552 427 aa13.77□□□□□ -0.21
CCDC28B-204ENST00000469003 MS4A2Q01362 244 aa13.77□□□□□ -0.21
CCDC28B-204ENST00000469003 EIF2B1Q14232 305 aaKnown RBP13.77□□□□□ -0.21
CCDC28B-204ENST00000469003 OR8B8Q15620 311 aa13.77□□□□□ -0.21
CCDC28B-204ENST00000469003 LINC01590Q5TEZ4 76 aa13.77□□□□□ -0.21
CCDC28B-204ENST00000469003 GPR157Q5UAW9 335 aa13.77□□□□□ -0.21
CCDC28B-204ENST00000469003 CD300LDQ6UXZ3 194 aa13.77□□□□□ -0.21
CCDC28B-204ENST00000469003 TECTBQ96PL2 329 aa13.77□□□□□ -0.21
CCDC28B-204ENST00000469003 TOR3AQ9H497 397 aa13.77□□□□□ -0.21
CCDC28B-204ENST00000469003 PRDM13Q9H4Q3 707 aa13.77□□□□□ -0.21
CCDC28B-204ENST00000469003 SP140LQ9H930 580 aa13.77□□□□□ -0.21
CCDC28B-204ENST00000469003 CMC2Q9NRP2 79 aa13.77□□□□□ -0.21
CCDC28B-204ENST00000469003 C14orf119Q9NWQ9 140 aa13.77□□□□□ -0.21
CCDC28B-204ENST00000469003 C1orf123Q9NWV4 160 aa13.77□□□□□ -0.21
CCDC28B-204ENST00000469003 PKD1L1Q8TDX9 2849 aa13.76□□□□□ -0.21
CCDC28B-204ENST00000469003 MDFIC2A0A1B0GVS7 189 aa13.76□□□□□ -0.21
CCDC28B-204ENST00000469003 A6NLC8 198 aa13.76□□□□□ -0.21
CCDC28B-204ENST00000469003 ANKRD30BLA7E2S9 258 aa13.76□□□□□ -0.21
CCDC28B-204ENST00000469003 TMPRSS2O15393 492 aa13.76□□□□□ -0.21
CCDC28B-204ENST00000469003 TBX1O43435 398 aa13.76□□□□□ -0.21
CCDC28B-204ENST00000469003 ADAM20O43506 726 aa13.76□□□□□ -0.21
CCDC28B-204ENST00000469003 LIPFP07098 398 aa13.76□□□□□ -0.21
CCDC28B-204ENST00000469003 GRPP07492 148 aa13.76□□□□□ -0.21
CCDC28B-204ENST00000469003 CX3CR1P49238 355 aa13.76□□□□□ -0.21
CCDC28B-204ENST00000469003 GK3PQ14409 553 aa13.76□□□□□ -0.21
CCDC28B-204ENST00000469003 BRD3OSQ6XYD6 125 aa13.76□□□□□ -0.21
CCDC28B-204ENST00000469003 ZNF826PQ6ZT77 177 aa13.76□□□□□ -0.21
CCDC28B-204ENST00000469003 SPATC1Q76KD6 591 aa13.76□□□□□ -0.21
CCDC28B-204ENST00000469003 GCSAMQ8N6F7 178 aa13.76□□□□□ -0.21
CCDC28B-204ENST00000469003 OR10G2Q8NGC3 310 aa13.76□□□□□ -0.21
CCDC28B-204ENST00000469003 TEX47Q8TBZ9 253 aa13.76□□□□□ -0.21
CCDC28B-204ENST00000469003 INTS14Q96SY0 518 aa13.76□□□□□ -0.21
CCDC28B-204ENST00000469003 NIPSNAP1Q9BPW8 284 aa13.76□□□□□ -0.21
CCDC28B-204ENST00000469003 UNKLQ9H9P5 680 aaKnown RBP13.76□□□□□ -0.21
CCDC28B-204ENST00000469003 POM121CA8CG34 1229 aa13.75□□□□□ -0.21
CCDC28B-204ENST00000469003 ZNF879B4DU55 563 aa13.75□□□□□ -0.21
CCDC28B-204ENST00000469003 P2RY10O00398 339 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 78.4 ms