RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 ANKDD1AQ495B1 522 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 CT45A2Q5DJT8 189 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 ARMC4Q5T2S8 1044 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 LCN1P1Q5VSP4 162 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 C12orf73Q69YU5 71 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 ZNF770Q6IQ21 691 aaPredicted RBP4.08□□□□□ -1.76
VPS29-212ENST00000621131 C5orf46Q6UWT4 87 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 NPSR1Q6W5P4 371 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 AHSA2Q719I0 299 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 COX15Q7KZN9 410 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 PRSS48Q7RTY5 328 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 TSEN54Q7Z6J9 526 aaKnown RBP4.08□□□□□ -1.76
VPS29-212ENST00000621131 CLVS1Q8IUQ0 354 aaPredicted RBP4.08□□□□□ -1.76
VPS29-212ENST00000621131 GID4Q8IVV7 300 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 NRMQ8IXM6 262 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 C9orf40Q8IXQ3 194 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 ENTHD1Q8IYW4 607 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 DND1Q8IYX4 353 aaKnown RBP4.08□□□□□ -1.76
VPS29-212ENST00000621131 C10orf53Q8N6V4 93 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 LSMEM1Q8N8F7 131 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 UNC13CQ8NB66 2214 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 OR2T33Q8NG76 320 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 OR4D11Q8NGI4 311 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 TMEM234Q8WY98 164 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 HIST1H2ACQ93077 130 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 BPIFA2Q96DR5 249 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 SGTBQ96EQ0 304 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 MRPL48Q96GC5 212 aaKnown RBP4.08□□□□□ -1.76
VPS29-212ENST00000621131 CTRCQ99895 268 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 BCL7BQ9BQE9 202 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 DDA1Q9BW61 102 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 NUDT9Q9BW91 350 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 TSSK6Q9BXA6 273 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 DEFB126Q9BYW3 111 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 SLC19A3Q9BZV2 496 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 YIPF3Q9GZM5 350 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 NXF5Q9H1B4 397 aaKnown RBP4.08□□□□□ -1.76
VPS29-212ENST00000621131 C12orf10Q9HB07 376 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 MAN2C1Q9NTJ4 1040 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 TVP23BQ9NYZ1 205 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP4.08□□□□□ -1.76
VPS29-212ENST00000621131 PPP1R3CQ9UQK1 317 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 PTRH2Q9Y3E5 179 aaKnown RBP4.08□□□□□ -1.76
VPS29-212ENST00000621131 PCDHGA1Q9Y5H4 931 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 CELSR1Q9NYQ6 3014 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 UTP20O75691 2785 aaKnown RBP4.07□□□□□ -1.76
VPS29-212ENST00000621131 A0A1B0GWA3 101 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 A0A1W2PPR1 153 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 OR6C70A6NIJ9 312 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 TRIM64CA6NLI5 447 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 VSTM2BA6NLU5 285 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 NPIPB9F8W1W9 429 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 KPNA4O00629 521 aaPredicted RBP4.07□□□□□ -1.76
VPS29-212ENST00000621131 SCO2O43819 266 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 CDC40O60508 579 aaKnown RBP eCLIP4.07□□□□□ -1.76
VPS29-212ENST00000621131 ICOSLGO75144 302 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 NDUFB2O95178 105 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 RAB36O95755 333 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 FADS2O95864 444 aaKnown RBP4.07□□□□□ -1.76
VPS29-212ENST00000621131 EPPINO95925 133 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 IGKV1D-16P01601 117 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 CLPSP04118 112 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 CDK1P06493 297 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 RAB40ALP0C0E4 278 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 ICAM2P13598 275 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 ZNF3P17036 446 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 CXCR1P25024 350 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 PSMB9P28065 219 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 EVI2BP34910 448 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 RPL4P36578 427 aaKnown RBP4.07□□□□□ -1.76
VPS29-212ENST00000621131 GPR4P46093 362 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 OMPP47874 163 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 SERPINB10P48595 397 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 P2RX1P51575 399 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 ZNF41P51814 821 aaPredicted RBP4.07□□□□□ -1.76
VPS29-212ENST00000621131 ZNF136P52737 540 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 TMBIM6P55061 237 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 PAX9P55771 341 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 CTBP2P56545 445 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 PRPS1P60891 318 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 SLC35A2P78381 396 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 HOXC5Q00444 222 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 CDK5Q00535 292 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 TMED1Q13445 227 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 NCF4Q15080 339 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 MAPK14Q16539 360 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 PGGHGQ32M88 737 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 CNPY1Q3B7I2 92 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 TIMM50Q3ZCQ8 353 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 SMARCD3Q6STE5 483 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 OPN5Q6U736 354 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 TMEM205Q6UW68 189 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 ZNF620Q6ZNG0 422 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 RTL4Q6ZR62 310 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 SHISA6Q6ZSJ9 500 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 LANCL3Q6ZV70 420 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 TMPRSS11FQ6ZWK6 438 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 NUP54Q7Z3B4 507 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 ZER1Q7Z7L7 766 aa4.07□□□□□ -1.76
VPS29-212ENST00000621131 OAFQ86UD1 273 aa4.07□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms