RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 M0R1B8 84 aa12.34□□□□□ -0.43
SKA1-202ENST00000398452 XRCC2O43543 280 aa12.34□□□□□ -0.43
SKA1-202ENST00000398452 SYT7O43581 403 aa12.34□□□□□ -0.43
SKA1-202ENST00000398452 MTRF1O75570 445 aaKnown RBP12.34□□□□□ -0.43
SKA1-202ENST00000398452 ATE1O95260 518 aa12.34□□□□□ -0.43
SKA1-202ENST00000398452 PNPP00491 289 aa12.34□□□□□ -0.43
SKA1-202ENST00000398452 DBHP09172 617 aa12.34□□□□□ -0.43
SKA1-202ENST00000398452 ACSM4P0C7M7 580 aa12.34□□□□□ -0.43
SKA1-202ENST00000398452 OCM2P0CE71 109 aa12.34□□□□□ -0.43
SKA1-202ENST00000398452 ACHEP22303 614 aa12.34□□□□□ -0.43
SKA1-202ENST00000398452 CFL1P23528 166 aaKnown RBP12.34□□□□□ -0.43
SKA1-202ENST00000398452 GADD45AP24522 165 aa12.34□□□□□ -0.43
SKA1-202ENST00000398452 OTX1P32242 354 aaPredicted RBP12.34□□□□□ -0.43
SKA1-202ENST00000398452 PEX19P40855 299 aa12.34□□□□□ -0.43
SKA1-202ENST00000398452 ZNF83P51522 516 aa12.34□□□□□ -0.43
SKA1-202ENST00000398452 NANOS3P60323 173 aaKnown RBP12.34□□□□□ -0.43
SKA1-202ENST00000398452 RPS25P62851 125 aaKnown RBP12.34□□□□□ -0.43
SKA1-202ENST00000398452 TAB1Q15750 504 aa12.34□□□□□ -0.43
SKA1-202ENST00000398452 SSX1Q16384 188 aa12.34□□□□□ -0.43
SKA1-202ENST00000398452 WFDC8Q8IUA0 241 aa12.34□□□□□ -0.43
SKA1-202ENST00000398452 CPEB3Q8NE35 698 aaKnown RBP12.34□□□□□ -0.43
SKA1-202ENST00000398452 CCDC54Q8NEL0 328 aa12.34□□□□□ -0.43
SKA1-202ENST00000398452 AKAP1Q92667 903 aaKnown RBP eCLIP12.34□□□□□ -0.43
SKA1-202ENST00000398452 APOBEC3DQ96AK3 386 aaPredicted RBP12.34□□□□□ -0.43
SKA1-202ENST00000398452 ZC3HAV1LQ96H79 300 aaKnown RBP12.34□□□□□ -0.43
SKA1-202ENST00000398452 RGCCQ9H4X1 137 aa12.34□□□□□ -0.43
SKA1-202ENST00000398452 PLEKHA1Q9HB21 404 aa12.34□□□□□ -0.43
SKA1-202ENST00000398452 NOX3Q9HBY0 568 aa12.34□□□□□ -0.43
SKA1-202ENST00000398452 ENPP5Q9UJA9 477 aa12.34□□□□□ -0.43
SKA1-202ENST00000398452 ZNF391Q9UJN7 358 aa12.34□□□□□ -0.43
SKA1-202ENST00000398452 SLC22A13Q9Y226 551 aa12.34□□□□□ -0.43
SKA1-202ENST00000398452 CACNA1CQ13936 2221 aa12.34□□□□□ -0.43
SKA1-202ENST00000398452 MYO7BQ6PIF6 2116 aa12.34□□□□□ -0.43
SKA1-202ENST00000398452 TRDV1A0A1B0GX56 115 aa12.33□□□□□ -0.44
SKA1-202ENST00000398452 ZNF503-AS2A6NEH8 195 aa12.33□□□□□ -0.44
SKA1-202ENST00000398452 OR4C45A6NMZ5 311 aa12.33□□□□□ -0.44
SKA1-202ENST00000398452 H3BSA7 217 aa12.33□□□□□ -0.44
SKA1-202ENST00000398452 J3QW42 95 aa12.33□□□□□ -0.44
SKA1-202ENST00000398452 CASKO14936 926 aa12.33□□□□□ -0.44
SKA1-202ENST00000398452 ZG16O60844 167 aa12.33□□□□□ -0.44
SKA1-202ENST00000398452 GATBO75879 557 aaKnown RBP12.33□□□□□ -0.44
SKA1-202ENST00000398452 ARL6IP5O75915 188 aa12.33□□□□□ -0.44
SKA1-202ENST00000398452 ZFPL1O95159 310 aa12.33□□□□□ -0.44
SKA1-202ENST00000398452 IGKV3-15P01624 115 aa12.33□□□□□ -0.44
SKA1-202ENST00000398452 CRYAAP02489 173 aa12.33□□□□□ -0.44
SKA1-202ENST00000398452 GALP22466 123 aa12.33□□□□□ -0.44
SKA1-202ENST00000398452 SORDQ00796 357 aa12.33□□□□□ -0.44
SKA1-202ENST00000398452 C3orf36Q3SXR2 165 aa12.33□□□□□ -0.44
SKA1-202ENST00000398452 TMEM108Q6UXF1 575 aa12.33□□□□□ -0.44
SKA1-202ENST00000398452 DOK3Q7L591 496 aa12.33□□□□□ -0.44
SKA1-202ENST00000398452 PRSS35Q8N3Z0 413 aa12.33□□□□□ -0.44
SKA1-202ENST00000398452 OR8B12Q8NGG6 310 aa12.33□□□□□ -0.44
SKA1-202ENST00000398452 ABHD4Q8TB40 342 aa12.33□□□□□ -0.44
SKA1-202ENST00000398452 PHYHIPQ92561 330 aa12.33□□□□□ -0.44
SKA1-202ENST00000398452 DGCR14Q96DF8 476 aaKnown RBP12.33□□□□□ -0.44
SKA1-202ENST00000398452 POM121L2Q96KW2 1035 aa12.33□□□□□ -0.44
SKA1-202ENST00000398452 SLITRK2Q9H156 845 aa12.33□□□□□ -0.44
SKA1-202ENST00000398452 G6PC2Q9NQR9 355 aa12.33□□□□□ -0.44
SKA1-202ENST00000398452 SIRT4Q9Y6E7 314 aaPredicted RBP12.33□□□□□ -0.44
SKA1-202ENST00000398452 LOC100509620A0A075B734 347 aa12.32□□□□□ -0.44
SKA1-202ENST00000398452 A0A0U1RQV5 110 aa12.32□□□□□ -0.44
SKA1-202ENST00000398452 LOC107986453A0A1B0GWG9 222 aa12.32□□□□□ -0.44
SKA1-202ENST00000398452 ZNF879B4DU55 563 aa12.32□□□□□ -0.44
SKA1-202ENST00000398452 P2RY10O00398 339 aa12.32□□□□□ -0.44
SKA1-202ENST00000398452 GABRPO00591 440 aa12.32□□□□□ -0.44
SKA1-202ENST00000398452 SRSF10O75494 262 aaKnown RBP12.32□□□□□ -0.44
SKA1-202ENST00000398452 OCMP0CE72 109 aaPredicted RBP12.32□□□□□ -0.44
SKA1-202ENST00000398452 CCL2P13500 99 aa12.32□□□□□ -0.44
SKA1-202ENST00000398452 ZNF14P17017 642 aaPredicted RBP12.32□□□□□ -0.44
SKA1-202ENST00000398452 ZNF20P17024 532 aa12.32□□□□□ -0.44
SKA1-202ENST00000398452 MYL9P24844 172 aa12.32□□□□□ -0.44
SKA1-202ENST00000398452 TGFBR2P37173 567 aa12.32□□□□□ -0.44
SKA1-202ENST00000398452 RAD52P43351 418 aa12.32□□□□□ -0.44
SKA1-202ENST00000398452 KIR3DL2P43630 455 aa12.32□□□□□ -0.44
SKA1-202ENST00000398452 LSM3P62310 102 aaKnown RBP12.32□□□□□ -0.44
SKA1-202ENST00000398452 Q499Y3 187 aa12.32□□□□□ -0.44
SKA1-202ENST00000398452 ACSM3Q53FZ2 586 aa12.32□□□□□ -0.44
SKA1-202ENST00000398452 CEACAM19Q7Z692 300 aa12.32□□□□□ -0.44
SKA1-202ENST00000398452 ZNF584Q8IVC4 421 aa12.32□□□□□ -0.44
SKA1-202ENST00000398452 C1orf174Q8IYL3 243 aa12.32□□□□□ -0.44
SKA1-202ENST00000398452 KBTBD8Q8NFY9 601 aa12.32□□□□□ -0.44
SKA1-202ENST00000398452 OR13C3Q8NGS6 347 aa12.32□□□□□ -0.44
SKA1-202ENST00000398452 PGLYRP3Q96LB9 341 aa12.32□□□□□ -0.44
SKA1-202ENST00000398452 KCTD7Q96MP8 289 aa12.32□□□□□ -0.44
SKA1-202ENST00000398452 OR51E2Q9H255 320 aa12.32□□□□□ -0.44
SKA1-202ENST00000398452 OPA3Q9H6K4 179 aa12.32□□□□□ -0.44
SKA1-202ENST00000398452 TBCCD1Q9NVR7 557 aa12.32□□□□□ -0.44
SKA1-202ENST00000398452 CRNNQ9UBG3 495 aaPredicted RBP12.32□□□□□ -0.44
SKA1-202ENST00000398452 CKLFQ9UBR5 152 aa12.32□□□□□ -0.44
SKA1-202ENST00000398452 TUBAL3A6NHL2 446 aa12.31□□□□□ -0.44
SKA1-202ENST00000398452 A6NHS1 94 aa12.31□□□□□ -0.44
SKA1-202ENST00000398452 ZNF701M0R085 212 aaPredicted RBP12.31□□□□□ -0.44
SKA1-202ENST00000398452 SLC22A1O15245 554 aa12.31□□□□□ -0.44
SKA1-202ENST00000398452 GABARAPO95166 117 aa12.31□□□□□ -0.44
SKA1-202ENST00000398452 TTRP02766 147 aa12.31□□□□□ -0.44
SKA1-202ENST00000398452 ISG15P05161 165 aa12.31□□□□□ -0.44
SKA1-202ENST00000398452 CECR9P0C854 216 aa12.31□□□□□ -0.44
SKA1-202ENST00000398452 NR4A1P22736 598 aa12.31□□□□□ -0.44
SKA1-202ENST00000398452 PTAFRP25105 342 aa12.31□□□□□ -0.44
SKA1-202ENST00000398452 SOX2P48431 317 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 171.6 ms