RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 C1orf94Q6P1W5 598 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 ULK3Q6PHR2 472 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 ISLR2Q6UXK2 745 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 DGAT2L6Q6ZPD8 337 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 RASSF6Q6ZTQ3 369 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 OLIG3Q7RTU3 272 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 CPEB2Q7Z5Q1 589 aaKnown RBP4.09□□□□□ -1.75
VPS29-212ENST00000621131 ANKRD37Q7Z713 158 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 RBM45Q8IUH3 476 aaKnown RBP4.09□□□□□ -1.75
VPS29-212ENST00000621131 Q8N377 158 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 CADM2Q8N3J6 435 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 CLDN22Q8N7P3 220 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 ZNF615Q8N8J6 731 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 B3GNT7Q8NFL0 401 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 OR10G8Q8NGN5 311 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 OR8J1Q8NGP2 316 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 OR9Q1Q8NGQ5 310 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 OR8K3Q8NH51 312 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 ZNF420Q8TAQ5 688 aaPredicted RBP4.09□□□□□ -1.75
VPS29-212ENST00000621131 NUBPLQ8TB37 319 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 CNIH3Q8TBE1 160 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 SLC7A13Q8TCU3 470 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 DOK4Q8TEW6 326 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 ZNF721Q8TF20 911 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 PTPMT1Q8WUK0 201 aaPredicted RBP4.09□□□□□ -1.75
VPS29-212ENST00000621131 ZDHHC19Q8WVZ1 309 aaPredicted RBP4.09□□□□□ -1.75
VPS29-212ENST00000621131 TMEM239Q8WW34 195 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 RORBQ92753 470 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 MR1Q95460 341 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 TSLPQ969D9 159 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 EFHD2Q96C19 240 aaPredicted RBP4.09□□□□□ -1.75
VPS29-212ENST00000621131 MYCBPQ99417 103 aaPredicted RBP4.09□□□□□ -1.75
VPS29-212ENST00000621131 BARD1Q99728 777 aaKnown RBP4.09□□□□□ -1.75
VPS29-212ENST00000621131 COPS4Q9BT78 406 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 WWTR1Q9GZV5 400 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 RACGAP1Q9H0H5 632 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 SLC26A1Q9H2B4 701 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 SLC25A19Q9HC21 320 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 EXOSC3Q9NQT5 275 aaKnown RBP4.09□□□□□ -1.75
VPS29-212ENST00000621131 FBXO8Q9NRD0 319 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 SDHAF3Q9NRP4 125 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 MED17Q9NVC6 651 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 CNOT2Q9NZN8 540 aaKnown RBP4.09□□□□□ -1.75
VPS29-212ENST00000621131 B3GAT1Q9P2W7 334 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 CTSFQ9UBX1 484 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 WARS2Q9UGM6 360 aaKnown RBP4.09□□□□□ -1.75
VPS29-212ENST00000621131 BAIAP2Q9UQB8 552 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 RNF6Q9Y252 685 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 MOB4Q9Y3A3 225 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 RPL36Q9Y3U8 105 aaKnown RBP4.09□□□□□ -1.75
VPS29-212ENST00000621131 CDH10Q9Y6N8 788 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 COMMD3-BMI1R4GMX3 469 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 U3KQA8 63 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 NAV3Q8IVL0 2385 aa4.09□□□□□ -1.76
VPS29-212ENST00000621131 BOD1L1Q8NFC6 3051 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 A0A087WUU8 490 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 A0A0B4J2E0 115 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 TRBV11-1A0A0K0K1C0 115 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 A0A1B0GX12 115 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 ANKRD61A6NGH8 418 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 TRIM64A6NGJ6 449 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 C15orf61A6NNL5 157 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 RIIAD1A6NNX1 92 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 ZNF99A8MXY4 864 aaPredicted RBP4.08□□□□□ -1.76
VPS29-212ENST00000621131 EFCAB9A8MZ26 197 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 ZNF701M0R085 212 aaPredicted RBP4.08□□□□□ -1.76
VPS29-212ENST00000621131 TP53I11O14683 189 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 FFAR1O14842 300 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 MYL12BO14950 172 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 ZNF264O43296 627 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 OR6B1O95007 311 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 SOX14O95416 240 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 IFNGP01579 166 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 IGKV3-11P04433 115 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 GKN3PP0CG01 181 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 CT45A8P0DMV1 189 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 CT45A9P0DMV2 189 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 PIPP12273 146 aaPredicted RBP4.08□□□□□ -1.76
VPS29-212ENST00000621131 GP1BBP13224 206 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 MYL12AP19105 171 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 ITIH1P19827 911 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 TBXA2RP21731 343 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 MMP11P24347 488 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 GTF2E2P29084 291 aaKnown RBP4.08□□□□□ -1.76
VPS29-212ENST00000621131 GABRA5P31644 462 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 ATP6V1E1P36543 226 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 OPRL1P41146 370 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 MTORP42345 2549 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 ALDH3B2P48448 385 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 SLC9A3P48764 834 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 LIMK1P53667 647 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 MFAP4P55083 255 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 RP1P56715 2156 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 SLC26A5P58743 744 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 SNRPGP62308 76 aaKnown RBP4.08□□□□□ -1.76
VPS29-212ENST00000621131 RPS15P62841 145 aaKnown RBP4.08□□□□□ -1.76
VPS29-212ENST00000621131 PRKCDQ05655 676 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 ZFP36L1Q07352 338 aaKnown RBP4.08□□□□□ -1.76
VPS29-212ENST00000621131 GINS1Q14691 196 aa4.08□□□□□ -1.76
VPS29-212ENST00000621131 SNAPC1Q16533 368 aa4.08□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 100.9 ms