RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 YIPF7Q8N8F6 280 aa25.48■■□□□ 1.67
LIMCH1-211ENST00000509638 TMEM80Q96HE8 168 aa25.48■■□□□ 1.67
LIMCH1-211ENST00000509638 OR2J1Q9GZK6 312 aa25.48■■□□□ 1.67
LIMCH1-211ENST00000509638 POFUT1Q9H488 388 aa25.48■■□□□ 1.67
LIMCH1-211ENST00000509638 FKBP14Q9NWM8 211 aa25.48■■□□□ 1.67
LIMCH1-211ENST00000509638 FZR1Q9UM11 496 aa25.48■■□□□ 1.67
LIMCH1-211ENST00000509638 STARD10Q9Y365 291 aa25.48■■□□□ 1.67
LIMCH1-211ENST00000509638 N6AMT1Q9Y5N5 214 aa25.48■■□□□ 1.67
LIMCH1-211ENST00000509638 METTL15A6NJ78 407 aa25.47■■□□□ 1.67
LIMCH1-211ENST00000509638 OR4A8P0C604 315 aa25.47■■□□□ 1.67
LIMCH1-211ENST00000509638 MVKQ03426 396 aa25.47■■□□□ 1.67
LIMCH1-211ENST00000509638 MED21Q13503 144 aa25.47■■□□□ 1.67
LIMCH1-211ENST00000509638 ZNF829Q3KNS6 432 aaPredicted RBP25.47■■□□□ 1.67
LIMCH1-211ENST00000509638 ZNF611Q8N823 705 aa25.47■■□□□ 1.67
LIMCH1-211ENST00000509638 SLC25A40Q8TBP6 338 aa25.47■■□□□ 1.67
LIMCH1-211ENST00000509638 ZNF649Q9BS31 505 aa25.47■■□□□ 1.67
LIMCH1-211ENST00000509638 ACOXLQ9NUZ1 547 aa25.47■■□□□ 1.67
LIMCH1-211ENST00000509638 CMAHPQ9Y471 501 aa25.47■■□□□ 1.67
LIMCH1-211ENST00000509638 SULT1C4O75897 302 aa25.46■■□□□ 1.67
LIMCH1-211ENST00000509638 LIMS3P0CW19 117 aa25.46■■□□□ 1.67
LIMCH1-211ENST00000509638 LIMS4P0CW20 117 aa25.46■■□□□ 1.67
LIMCH1-211ENST00000509638 MYL12AP19105 171 aa25.46■■□□□ 1.67
LIMCH1-211ENST00000509638 DCTDP32321 178 aa25.46■■□□□ 1.67
LIMCH1-211ENST00000509638 C1orf174Q8IYL3 243 aa25.46■■□□□ 1.67
LIMCH1-211ENST00000509638 STX19Q8N4C7 294 aa25.46■■□□□ 1.67
LIMCH1-211ENST00000509638 NRGNQ92686 78 aa25.46■■□□□ 1.67
LIMCH1-211ENST00000509638 MRPL48Q96GC5 212 aaKnown RBP25.46■■□□□ 1.67
LIMCH1-211ENST00000509638 COG8Q96MW5 612 aa25.46■■□□□ 1.67
LIMCH1-211ENST00000509638 FAIMQ9NVQ4 179 aa25.46■■□□□ 1.67
LIMCH1-211ENST00000509638 PAK1IP1Q9NWT1 392 aaPredicted RBP25.46■■□□□ 1.67
LIMCH1-211ENST00000509638 C5orf63A6NC05 138 aa25.45■■□□□ 1.66
LIMCH1-211ENST00000509638 PTGES3LE9PB15 166 aa25.45■■□□□ 1.66
LIMCH1-211ENST00000509638 APOBEC3AP31941 199 aaPredicted RBP25.45■■□□□ 1.66
LIMCH1-211ENST00000509638 ETV1P50549 477 aa25.45■■□□□ 1.66
LIMCH1-211ENST00000509638 MFGE8Q08431 387 aaPredicted RBP25.45■■□□□ 1.66
LIMCH1-211ENST00000509638 FAM57BQ71RH2 274 aa25.45■■□□□ 1.66
LIMCH1-211ENST00000509638 PRSS45Q7RTY3 260 aa25.45■■□□□ 1.66
LIMCH1-211ENST00000509638 MUC15Q8N387 334 aa25.45■■□□□ 1.66
LIMCH1-211ENST00000509638 MRPL24Q96A35 216 aaKnown RBP25.45■■□□□ 1.66
LIMCH1-211ENST00000509638 MARS2Q96GW9 593 aaKnown RBP25.45■■□□□ 1.66
LIMCH1-211ENST00000509638 C4orf36Q96KX1 117 aa25.45■■□□□ 1.66
LIMCH1-211ENST00000509638 FAM206AQ9NX38 181 aa25.45■■□□□ 1.66
LIMCH1-211ENST00000509638 PTTG3PQ9NZH4 202 aa25.45■■□□□ 1.66
LIMCH1-211ENST00000509638 EXOSC1Q9Y3B2 195 aaKnown RBP25.45■■□□□ 1.66
LIMCH1-211ENST00000509638 TPRKBQ9Y3C4 175 aa25.45■■□□□ 1.66
LIMCH1-211ENST00000509638 RPP14O95059 124 aaKnown RBP25.44■■□□□ 1.66
LIMCH1-211ENST00000509638 CRHBPP24387 322 aa25.44■■□□□ 1.66
LIMCH1-211ENST00000509638 TTKP33981 857 aa25.44■■□□□ 1.66
LIMCH1-211ENST00000509638 OR12D2P58182 307 aa25.44■■□□□ 1.66
LIMCH1-211ENST00000509638 LIPNQ5VXI9 398 aa25.44■■□□□ 1.66
LIMCH1-211ENST00000509638 C20orf204Q6ZNR8 217 aa25.44■■□□□ 1.66
LIMCH1-211ENST00000509638 FBXL14Q8N1E6 418 aa25.44■■□□□ 1.66
LIMCH1-211ENST00000509638 OR5L1Q8NGL2 311 aa25.44■■□□□ 1.66
LIMCH1-211ENST00000509638 SGCDQ92629 289 aa25.44■■□□□ 1.66
LIMCH1-211ENST00000509638 TMEM269A0A1B0GVZ9 245 aa25.44■■□□□ 1.66
LIMCH1-211ENST00000509638 TBX1O43435 398 aa25.44■■□□□ 1.66
LIMCH1-211ENST00000509638 SERPINF1P36955 418 aa25.44■■□□□ 1.66
LIMCH1-211ENST00000509638 SLC35A2P78381 396 aa25.44■■□□□ 1.66
LIMCH1-211ENST00000509638 RBM48Q5RL73 367 aaKnown RBP25.44■■□□□ 1.66
LIMCH1-211ENST00000509638 KLF14Q8TD94 323 aaPredicted RBP25.44■■□□□ 1.66
LIMCH1-211ENST00000509638 MYCBPQ99417 103 aaPredicted RBP25.44■■□□□ 1.66
LIMCH1-211ENST00000509638 SYT3Q9BQG1 590 aa25.44■■□□□ 1.66
LIMCH1-211ENST00000509638 MRPL37Q9BZE1 423 aaKnown RBP25.44■■□□□ 1.66
LIMCH1-211ENST00000509638 R4GMQ9 66 aa25.44■■□□□ 1.66
LIMCH1-211ENST00000509638 J3QLW9 94 aa25.43■■□□□ 1.66
LIMCH1-211ENST00000509638 SRSF10O75494 262 aaKnown RBP25.43■■□□□ 1.66
LIMCH1-211ENST00000509638 SOD3P08294 240 aa25.43■■□□□ 1.66
LIMCH1-211ENST00000509638 DANCRP0C864 163 aa25.43■■□□□ 1.66
LIMCH1-211ENST00000509638 ZNF19P17023 458 aa25.43■■□□□ 1.66
LIMCH1-211ENST00000509638 C21orf33P30042 268 aaPredicted RBP25.43■■□□□ 1.66
LIMCH1-211ENST00000509638 MPV17P39210 176 aa25.43■■□□□ 1.66
LIMCH1-211ENST00000509638 OR52H1Q8NGJ2 320 aa25.43■■□□□ 1.66
LIMCH1-211ENST00000509638 OR2AE1Q8NHA4 323 aa25.43■■□□□ 1.66
LIMCH1-211ENST00000509638 PGAM5Q96HS1 289 aa25.43■■□□□ 1.66
LIMCH1-211ENST00000509638 LIME1Q9H400 295 aa25.43■■□□□ 1.66
LIMCH1-211ENST00000509638 PLK3Q9H4B4 646 aa25.43■■□□□ 1.66
LIMCH1-211ENST00000509638 SP140LQ9H930 580 aa25.43■■□□□ 1.66
LIMCH1-211ENST00000509638 ISG20L2Q9H9L3 353 aaKnown RBP25.43■■□□□ 1.66
LIMCH1-211ENST00000509638 BLOC1S6Q9UL45 172 aa25.43■■□□□ 1.66
LIMCH1-211ENST00000509638 GTF2A1LQ9UNN4 478 aa25.43■■□□□ 1.66
LIMCH1-211ENST00000509638 VSTM5A8MXK1 200 aa25.42■■□□□ 1.66
LIMCH1-211ENST00000509638 H3BSA7 217 aa25.42■■□□□ 1.66
LIMCH1-211ENST00000509638 PNPP00491 289 aa25.42■■□□□ 1.66
LIMCH1-211ENST00000509638 CDK1P06493 297 aa25.42■■□□□ 1.66
LIMCH1-211ENST00000509638 ZNF250P15622 560 aa25.42■■□□□ 1.66
LIMCH1-211ENST00000509638 MMP16P51512 607 aa25.42■■□□□ 1.66
LIMCH1-211ENST00000509638 MALLQ13021 153 aa25.42■■□□□ 1.66
LIMCH1-211ENST00000509638 HLXQ14774 488 aaPredicted RBP25.42■■□□□ 1.66
LIMCH1-211ENST00000509638 ZNF718Q3SXZ3 478 aa25.42■■□□□ 1.66
LIMCH1-211ENST00000509638 GLYATL3Q5SZD4 288 aa25.42■■□□□ 1.66
LIMCH1-211ENST00000509638 KCTD20Q7Z5Y7 419 aa25.42■■□□□ 1.66
LIMCH1-211ENST00000509638 LRP11Q86VZ4 500 aa25.42■■□□□ 1.66
LIMCH1-211ENST00000509638 SYS1Q8N2H4 156 aa25.42■■□□□ 1.66
LIMCH1-211ENST00000509638 SYNPRQ8TBG9 265 aa25.42■■□□□ 1.66
LIMCH1-211ENST00000509638 MYDGFQ969H8 173 aa25.42■■□□□ 1.66
LIMCH1-211ENST00000509638 CLEC2DQ9UHP7 191 aa25.42■■□□□ 1.66
LIMCH1-211ENST00000509638 DUSP13Q9UII6 198 aa25.42■■□□□ 1.66
LIMCH1-211ENST00000509638 LRRC42Q9Y546 428 aa25.42■■□□□ 1.66
LIMCH1-211ENST00000509638 ARFGEF3Q5TH69 2177 aa25.41■■□□□ 1.66
LIMCH1-211ENST00000509638 LOC110117498-PIK3R3F6TDL0 507 aa25.41■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms