RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 DDOSTP39656 456 aa5.94□□□□□ -1.46
VPS41-208ENST00000448833 SPIBQ01892 262 aa5.94□□□□□ -1.46
VPS41-208ENST00000448833 TSPAN31Q12999 210 aa5.94□□□□□ -1.46
VPS41-208ENST00000448833 BAMBIQ13145 260 aa5.94□□□□□ -1.46
VPS41-208ENST00000448833 HLXQ14774 488 aaPredicted RBP5.94□□□□□ -1.46
VPS41-208ENST00000448833 SNCBQ16143 134 aa5.94□□□□□ -1.46
VPS41-208ENST00000448833 AWAT1Q58HT5 328 aa5.94□□□□□ -1.46
VPS41-208ENST00000448833 TMEM255AQ5JRV8 349 aa5.94□□□□□ -1.46
VPS41-208ENST00000448833 OR2T2Q6IF00 324 aa5.94□□□□□ -1.46
VPS41-208ENST00000448833 LEG1Q6P5S2 330 aa5.94□□□□□ -1.46
VPS41-208ENST00000448833 DCDC5Q6ZRR9 648 aa5.94□□□□□ -1.46
VPS41-208ENST00000448833 COLCA1Q6ZS62 124 aa5.94□□□□□ -1.46
VPS41-208ENST00000448833 C9orf139Q6ZV77 190 aa5.94□□□□□ -1.46
VPS41-208ENST00000448833 PTCHD4Q6ZW05 846 aa5.94□□□□□ -1.46
VPS41-208ENST00000448833 PGAP1Q75T13 922 aa5.94□□□□□ -1.46
VPS41-208ENST00000448833 MRPL21Q7Z2W9 205 aaKnown RBP5.94□□□□□ -1.46
VPS41-208ENST00000448833 TSEN54Q7Z6J9 526 aaKnown RBP5.94□□□□□ -1.46
VPS41-208ENST00000448833 OR5AS1Q8N127 324 aa5.94□□□□□ -1.46
VPS41-208ENST00000448833 OR6V1Q8N148 313 aa5.94□□□□□ -1.46
VPS41-208ENST00000448833 ZDHHC22Q8N966 263 aa5.94□□□□□ -1.46
VPS41-208ENST00000448833 DEFB108BQ8NET1 73 aa5.94□□□□□ -1.46
VPS41-208ENST00000448833 SLC26A10Q8NG04 563 aa5.94□□□□□ -1.46
VPS41-208ENST00000448833 OR52L1Q8NGH7 329 aa5.94□□□□□ -1.46
VPS41-208ENST00000448833 OR2T4Q8NH00 348 aa5.94□□□□□ -1.46
VPS41-208ENST00000448833 OR52J3Q8NH60 311 aa5.94□□□□□ -1.46
VPS41-208ENST00000448833 Q8TCH9 128 aa5.94□□□□□ -1.46
VPS41-208ENST00000448833 SPRYD4Q8WW59 207 aaPredicted RBP5.94□□□□□ -1.46
VPS41-208ENST00000448833 SLC7A6Q92536 515 aa5.94□□□□□ -1.46
VPS41-208ENST00000448833 MEGF10Q96KG7 1140 aa5.94□□□□□ -1.46
VPS41-208ENST00000448833 NSMCE2Q96MF7 247 aa5.94□□□□□ -1.46
VPS41-208ENST00000448833 SIGLEC11Q96RL6 698 aa5.94□□□□□ -1.46
VPS41-208ENST00000448833 NMNAT3Q96T66 252 aa5.94□□□□□ -1.46
VPS41-208ENST00000448833 ELAC2Q9BQ52 826 aaKnown RBP5.94□□□□□ -1.46
VPS41-208ENST00000448833 ZNF747Q9BV97 191 aa5.94□□□□□ -1.46
VPS41-208ENST00000448833 OR52D1Q9H346 318 aa5.94□□□□□ -1.46
VPS41-208ENST00000448833 FN3KRPQ9HA64 309 aa5.94□□□□□ -1.46
VPS41-208ENST00000448833 TMEM165Q9HC07 324 aa5.94□□□□□ -1.46
VPS41-208ENST00000448833 IL1RAPQ9NPH3 570 aa5.94□□□□□ -1.46
VPS41-208ENST00000448833 MMP26Q9NRE1 261 aa5.94□□□□□ -1.46
VPS41-208ENST00000448833 CLN8Q9UBY8 286 aa5.94□□□□□ -1.46
VPS41-208ENST00000448833 CYB5R1Q9UHQ9 305 aa5.94□□□□□ -1.46
VPS41-208ENST00000448833 BAIAP2Q9UQB8 552 aa5.94□□□□□ -1.46
VPS41-208ENST00000448833 LHFPL6Q9Y693 200 aa5.94□□□□□ -1.46
VPS41-208ENST00000448833 TRAV38-1A0A0B4J264 116 aa5.93□□□□□ -1.46
VPS41-208ENST00000448833 IGHV2-70DA0A0C4DH43 119 aa5.93□□□□□ -1.46
VPS41-208ENST00000448833 KIR2DS1A0A191URI9 304 aa5.93□□□□□ -1.46
VPS41-208ENST00000448833 F5H5K5 113 aa5.93□□□□□ -1.46
VPS41-208ENST00000448833 PPP1R3DO95685 299 aa5.93□□□□□ -1.46
VPS41-208ENST00000448833 RNASE1P07998 156 aaKnown RBP5.93□□□□□ -1.46
VPS41-208ENST00000448833 DBHP09172 617 aa5.93□□□□□ -1.46
VPS41-208ENST00000448833 ACSM4P0C7M7 580 aa5.93□□□□□ -1.46
VPS41-208ENST00000448833 HIST1H1CP16403 213 aaKnown RBP5.93□□□□□ -1.46
VPS41-208ENST00000448833 FUT4P22083 530 aa5.93□□□□□ -1.46
VPS41-208ENST00000448833 CD80P33681 288 aa5.93□□□□□ -1.46
VPS41-208ENST00000448833 GRK5P34947 590 aa5.93□□□□□ -1.46
VPS41-208ENST00000448833 GGT2P36268 569 aa5.93□□□□□ -1.46
VPS41-208ENST00000448833 CD200P41217 278 aa5.93□□□□□ -1.46
VPS41-208ENST00000448833 SLC15A1P46059 708 aa5.93□□□□□ -1.46
VPS41-208ENST00000448833 GSSP48637 474 aa5.93□□□□□ -1.46
VPS41-208ENST00000448833 PITPNBP48739 271 aa5.93□□□□□ -1.46
VPS41-208ENST00000448833 HMGA2P52926 109 aa5.93□□□□□ -1.46
VPS41-208ENST00000448833 TRAP1Q12931 704 aaKnown RBP5.93□□□□□ -1.46
VPS41-208ENST00000448833 GK2Q14410 553 aaPredicted RBP5.93□□□□□ -1.46
VPS41-208ENST00000448833 SEC23BQ15437 767 aa5.93□□□□□ -1.46
VPS41-208ENST00000448833 TAF13Q15543 124 aa5.93□□□□□ -1.46
VPS41-208ENST00000448833 OR8G1Q15617 311 aa5.93□□□□□ -1.46
VPS41-208ENST00000448833 ZNF404Q494X3 552 aa5.93□□□□□ -1.46
VPS41-208ENST00000448833 ZNF362Q5T0B9 420 aaPredicted RBP5.93□□□□□ -1.46
VPS41-208ENST00000448833 GPR157Q5UAW9 335 aa5.93□□□□□ -1.46
VPS41-208ENST00000448833 SLC18B1Q6NT16 456 aa5.93□□□□□ -1.46
VPS41-208ENST00000448833 DRAM2Q6UX65 266 aa5.93□□□□□ -1.46
VPS41-208ENST00000448833 C16orf89Q6UX73 402 aa5.93□□□□□ -1.46
VPS41-208ENST00000448833 RHOUQ7L0Q8 258 aa5.93□□□□□ -1.46
VPS41-208ENST00000448833 ZNF771Q7L3S4 317 aaPredicted RBP5.93□□□□□ -1.46
VPS41-208ENST00000448833 MOGAT3Q86VF5 341 aa5.93□□□□□ -1.46
VPS41-208ENST00000448833 PGAM4Q8N0Y7 254 aa5.93□□□□□ -1.46
VPS41-208ENST00000448833 PARP8Q8N3A8 854 aa5.93□□□□□ -1.46
VPS41-208ENST00000448833 FAM86B1Q8N7N1 296 aa5.93□□□□□ -1.46
VPS41-208ENST00000448833 SIGLECL1Q8N7X8 197 aa5.93□□□□□ -1.46
VPS41-208ENST00000448833 PNLDC1Q8NA58 520 aaKnown RBP5.93□□□□□ -1.46
VPS41-208ENST00000448833 BHLHE23Q8NDY6 225 aa5.93□□□□□ -1.46
VPS41-208ENST00000448833 C22orf15Q8WYQ4 148 aa5.93□□□□□ -1.46
VPS41-208ENST00000448833 UPRTQ96BW1 309 aa5.93□□□□□ -1.46
VPS41-208ENST00000448833 DMRTB1Q96MA1 342 aa5.93□□□□□ -1.46
VPS41-208ENST00000448833 TMEM246Q9BRR3 403 aa5.93□□□□□ -1.46
VPS41-208ENST00000448833 FUZQ9BT04 418 aa5.93□□□□□ -1.46
VPS41-208ENST00000448833 TRIM15Q9C019 465 aa5.93□□□□□ -1.46
VPS41-208ENST00000448833 MYLK2Q9H1R3 596 aa5.93□□□□□ -1.46
VPS41-208ENST00000448833 POFUT1Q9H488 388 aa5.93□□□□□ -1.46
VPS41-208ENST00000448833 ZNF696Q9H7X3 374 aa5.93□□□□□ -1.46
VPS41-208ENST00000448833 NOX4Q9NPH5 578 aa5.93□□□□□ -1.46
VPS41-208ENST00000448833 RPRD1BQ9NQG5 326 aaKnown RBP5.93□□□□□ -1.46
VPS41-208ENST00000448833 C14orf119Q9NWQ9 140 aa5.93□□□□□ -1.46
VPS41-208ENST00000448833 ERVK-18Q9QC07 812 aa5.93□□□□□ -1.46
VPS41-208ENST00000448833 RNF7Q9UBF6 113 aa5.93□□□□□ -1.46
VPS41-208ENST00000448833 ZNF69Q9UC07 566 aa5.93□□□□□ -1.46
VPS41-208ENST00000448833 CD300AQ9UGN4 299 aa5.93□□□□□ -1.46
VPS41-208ENST00000448833 OR6C68A6NDL8 312 aa5.92□□□□□ -1.46
VPS41-208ENST00000448833 GGT3PA6NGU5 568 aa5.92□□□□□ -1.46
VPS41-208ENST00000448833 DNAJC9-AS1A6NH13 148 aa5.92□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms