RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 IL11RAQ14626 422 aa16.25■□□□□ 0.19
SHKBP1-201ENST00000291842 OR52W1Q6IF63 320 aa16.25■□□□□ 0.19
SHKBP1-201ENST00000291842 FJX1Q86VR8 437 aa16.25■□□□□ 0.19
SHKBP1-201ENST00000291842 ANGPTL5Q86XS5 388 aa16.25■□□□□ 0.19
SHKBP1-201ENST00000291842 BPIFB2Q8N4F0 458 aa16.25■□□□□ 0.19
SHKBP1-201ENST00000291842 SLC22A24Q8N4F4 322 aa16.25■□□□□ 0.19
SHKBP1-201ENST00000291842 OR8B12Q8NGG6 310 aa16.25■□□□□ 0.19
SHKBP1-201ENST00000291842 FOXRED1Q96CU9 486 aaPredicted RBP16.25■□□□□ 0.19
SHKBP1-201ENST00000291842 CYYR1Q96J86 154 aa16.25■□□□□ 0.19
SHKBP1-201ENST00000291842 SFXN2Q96NB2 322 aa16.25■□□□□ 0.19
SHKBP1-201ENST00000291842 SLC6A7Q99884 636 aa16.25■□□□□ 0.19
SHKBP1-201ENST00000291842 FBXO4Q9UKT5 387 aa16.25■□□□□ 0.19
SHKBP1-201ENST00000291842 RAB22AQ9UL26 194 aa16.25■□□□□ 0.19
SHKBP1-201ENST00000291842 FXYD6-FXYD2A0A087WZ82 144 aa16.24■□□□□ 0.19
SHKBP1-201ENST00000291842 METTL21EPA6NDL7 271 aa16.24■□□□□ 0.19
SHKBP1-201ENST00000291842 AQP7P3A6NL99 342 aa16.24■□□□□ 0.19
SHKBP1-201ENST00000291842 KLF7O75840 302 aaPredicted RBP16.24■□□□□ 0.19
SHKBP1-201ENST00000291842 ZNF735P0CB33 412 aa16.24■□□□□ 0.19
SHKBP1-201ENST00000291842 SGCAQ16586 387 aa16.24■□□□□ 0.19
SHKBP1-201ENST00000291842 CDNFQ49AH0 187 aa16.24■□□□□ 0.19
SHKBP1-201ENST00000291842 SFRP5Q5T4F7 317 aa16.24■□□□□ 0.19
SHKBP1-201ENST00000291842 AWAT2Q6E213 333 aa16.24■□□□□ 0.19
SHKBP1-201ENST00000291842 TRAPPC6BQ86SZ2 158 aa16.24■□□□□ 0.19
SHKBP1-201ENST00000291842 ZNF584Q8IVC4 421 aa16.24■□□□□ 0.19
SHKBP1-201ENST00000291842 ADPRHL1Q8NDY3 354 aa16.24■□□□□ 0.19
SHKBP1-201ENST00000291842 PNPLA2Q96AD5 504 aa16.24■□□□□ 0.19
SHKBP1-201ENST00000291842 FXYD6Q9H0Q3 95 aa16.24■□□□□ 0.19
SHKBP1-201ENST00000291842 SCPEP1Q9HB40 452 aa16.24■□□□□ 0.19
SHKBP1-201ENST00000291842 GPR84Q9NQS5 396 aa16.24■□□□□ 0.19
SHKBP1-201ENST00000291842 COLQQ9Y215 455 aaPredicted RBP16.24■□□□□ 0.19
SHKBP1-201ENST00000291842 TMA7Q9Y2S6 64 aaKnown RBP16.24■□□□□ 0.19
SHKBP1-201ENST00000291842 RPS10-NUDT3A0A1W2PQS6 291 aa16.24■□□□□ 0.19
SHKBP1-201ENST00000291842 C5orf63A6NC05 138 aa16.24■□□□□ 0.19
SHKBP1-201ENST00000291842 MCRIP1C9JLW8 97 aa16.24■□□□□ 0.19
SHKBP1-201ENST00000291842 F5H5P2 479 aa16.24■□□□□ 0.19
SHKBP1-201ENST00000291842 OR4E1P0C645 316 aa16.24■□□□□ 0.19
SHKBP1-201ENST00000291842 COX6A1P12074 109 aa16.24■□□□□ 0.19
SHKBP1-201ENST00000291842 ZNF93P35789 620 aaPredicted RBP16.24■□□□□ 0.19
SHKBP1-201ENST00000291842 ZNF260Q3ZCT1 412 aa16.24■□□□□ 0.19
SHKBP1-201ENST00000291842 RAET1LQ5VY80 246 aa16.24■□□□□ 0.19
SHKBP1-201ENST00000291842 FAM57BQ71RH2 274 aa16.24■□□□□ 0.19
SHKBP1-201ENST00000291842 NICN1Q9BSH3 213 aa16.24■□□□□ 0.19
SHKBP1-201ENST00000291842 WDR54Q9H977 334 aa16.24■□□□□ 0.19
SHKBP1-201ENST00000291842 HS3ST3B1Q9Y662 390 aa16.24■□□□□ 0.19
SHKBP1-201ENST00000291842 LOC102723996A0A087X1L8 192 aa16.23■□□□□ 0.19
SHKBP1-201ENST00000291842 LINC00862A6NCI5 91 aa16.23■□□□□ 0.19
SHKBP1-201ENST00000291842 EIF1P41567 113 aaKnown RBP16.23■□□□□ 0.19
SHKBP1-201ENST00000291842 CX3CR1P49238 355 aa16.23■□□□□ 0.19
SHKBP1-201ENST00000291842 TMPPEQ6ZT21 453 aa16.23■□□□□ 0.19
SHKBP1-201ENST00000291842 NAA40Q86UY6 237 aa16.23■□□□□ 0.19
SHKBP1-201ENST00000291842 ZNF101Q8IZC7 436 aa16.23■□□□□ 0.19
SHKBP1-201ENST00000291842 AQP3Q92482 292 aa16.23■□□□□ 0.19
SHKBP1-201ENST00000291842 IMMP1LQ96LU5 166 aa16.23■□□□□ 0.19
SHKBP1-201ENST00000291842 PNRC2Q9NPJ4 139 aaKnown RBP16.23■□□□□ 0.19
SHKBP1-201ENST00000291842 HDGFL3Q9Y3E1 203 aa16.23■□□□□ 0.19
SHKBP1-201ENST00000291842 E9PLN8 166 aa16.23■□□□□ 0.19
SHKBP1-201ENST00000291842 QRFPP83859 136 aa16.23■□□□□ 0.19
SHKBP1-201ENST00000291842 DHODHQ02127 395 aa16.23■□□□□ 0.19
SHKBP1-201ENST00000291842 PHYHD1Q5SRE7 291 aa16.23■□□□□ 0.19
SHKBP1-201ENST00000291842 ATPAF1Q5TC12 328 aaPredicted RBP16.23■□□□□ 0.19
SHKBP1-201ENST00000291842 TMEM81Q6P7N7 255 aa16.23■□□□□ 0.19
SHKBP1-201ENST00000291842 UBALD2Q8IYN6 164 aa16.23■□□□□ 0.19
SHKBP1-201ENST00000291842 AGBL5Q8NDL9 886 aa16.23■□□□□ 0.19
SHKBP1-201ENST00000291842 SLC25A43Q8WUT9 341 aaPredicted RBP16.23■□□□□ 0.19
SHKBP1-201ENST00000291842 PTX4Q96A99 478 aa16.23■□□□□ 0.19
SHKBP1-201ENST00000291842 UCN2Q96RP3 112 aa16.23■□□□□ 0.19
SHKBP1-201ENST00000291842 SELENOIQ9C0D9 397 aa16.23■□□□□ 0.19
SHKBP1-201ENST00000291842 PISDQ9UG56 409 aa16.23■□□□□ 0.19
SHKBP1-201ENST00000291842 MAB21L2Q9Y586 359 aa16.23■□□□□ 0.19
SHKBP1-201ENST00000291842 TNRC6BQ9UPQ9 1833 aaKnown RBP16.22■□□□□ 0.19
SHKBP1-201ENST00000291842 WDPCPO95876 746 aa16.22■□□□□ 0.19
SHKBP1-201ENST00000291842 POU3F2P20265 443 aaPredicted RBP16.22■□□□□ 0.19
SHKBP1-201ENST00000291842 RAB6AP20340 208 aa16.22■□□□□ 0.19
SHKBP1-201ENST00000291842 SEC61A1P61619 476 aaKnown RBP16.22■□□□□ 0.19
SHKBP1-201ENST00000291842 SLC35A1P78382 337 aa16.22■□□□□ 0.19
SHKBP1-201ENST00000291842 ZNF283Q8N7M2 679 aa16.22■□□□□ 0.19
SHKBP1-201ENST00000291842 OR13C8Q8NGS7 320 aa16.22■□□□□ 0.19
SHKBP1-201ENST00000291842 ZNF775Q96BV0 537 aaPredicted RBP16.22■□□□□ 0.19
SHKBP1-201ENST00000291842 ZNF416Q9BWM5 594 aa16.22■□□□□ 0.19
SHKBP1-201ENST00000291842 SMOC1Q9H4F8 434 aa16.22■□□□□ 0.19
SHKBP1-201ENST00000291842 PROK2Q9HC23 129 aa16.22■□□□□ 0.19
SHKBP1-201ENST00000291842 ZNF160Q9HCG1 818 aa16.22■□□□□ 0.19
SHKBP1-201ENST00000291842 UPB1Q9UBR1 384 aa16.22■□□□□ 0.19
SHKBP1-201ENST00000291842 NXT1Q9UKK6 140 aaKnown RBP16.22■□□□□ 0.19
SHKBP1-201ENST00000291842 NCOA6Q14686 2063 aaPredicted RBP16.22■□□□□ 0.19
SHKBP1-201ENST00000291842 A0A0A6YYH2 397 aa16.22■□□□□ 0.19
SHKBP1-201ENST00000291842 A6NJ64 397 aa16.22■□□□□ 0.19
SHKBP1-201ENST00000291842 HIST3H3Q16695 136 aa16.22■□□□□ 0.19
SHKBP1-201ENST00000291842 RSPO4Q2I0M5 234 aaPredicted RBP16.22■□□□□ 0.19
SHKBP1-201ENST00000291842 TOR2AQ5JU69 321 aa16.22■□□□□ 0.19
SHKBP1-201ENST00000291842 LRRC18Q8N456 261 aa16.22■□□□□ 0.19
SHKBP1-201ENST00000291842 TMEM104Q8NE00 496 aa16.22■□□□□ 0.19
SHKBP1-201ENST00000291842 ZBTB8AQ96BR9 441 aa16.22■□□□□ 0.19
SHKBP1-201ENST00000291842 ZNF385AQ96PM9 386 aaKnown RBP16.22■□□□□ 0.19
SHKBP1-201ENST00000291842 SLCO5A1Q9H2Y9 848 aa16.22■□□□□ 0.19
SHKBP1-201ENST00000291842 ZNF230Q9UIE0 474 aaPredicted RBP16.22■□□□□ 0.19
SHKBP1-201ENST00000291842 CCDC163A0A0D9SF12 145 aa16.21■□□□□ 0.19
SHKBP1-201ENST00000291842 BPNT1O95861 308 aa16.21■□□□□ 0.19
SHKBP1-201ENST00000291842 CD74P04233 296 aa16.21■□□□□ 0.19
SHKBP1-201ENST00000291842 ZNF17P17021 662 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 84.7 ms