RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 ZNF141Q15928 474 aa4.1□□□□□ -1.75
VPS29-212ENST00000621131 IQCCQ4KMZ1 466 aa4.1□□□□□ -1.75
VPS29-212ENST00000621131 NKAIN1Q4KMZ8 207 aa4.1□□□□□ -1.75
VPS29-212ENST00000621131 PHLDA2Q53GA4 152 aa4.1□□□□□ -1.75
VPS29-212ENST00000621131 PDZK1Q5T2W1 519 aa4.1□□□□□ -1.75
VPS29-212ENST00000621131 DCAF12Q5T6F0 453 aa4.1□□□□□ -1.75
VPS29-212ENST00000621131 MEDAGQ5VYS4 303 aa4.1□□□□□ -1.75
VPS29-212ENST00000621131 PODNL1Q6PEZ8 512 aa4.1□□□□□ -1.75
VPS29-212ENST00000621131 HSDL2Q6YN16 418 aa4.1□□□□□ -1.75
VPS29-212ENST00000621131 MBOAT2Q6ZWT7 520 aa4.1□□□□□ -1.75
VPS29-212ENST00000621131 HMGN2P46Q86SG4 172 aa4.1□□□□□ -1.75
VPS29-212ENST00000621131 GRAMD2AQ8IUY3 354 aa4.1□□□□□ -1.75
VPS29-212ENST00000621131 MISPQ8IVT2 679 aa4.1□□□□□ -1.75
VPS29-212ENST00000621131 NAXDQ8IW45 347 aa4.1□□□□□ -1.75
VPS29-212ENST00000621131 PRSS58Q8IYP2 241 aa4.1□□□□□ -1.75
VPS29-212ENST00000621131 SLC43A2Q8N370 569 aa4.1□□□□□ -1.75
VPS29-212ENST00000621131 STX19Q8N4C7 294 aa4.1□□□□□ -1.75
VPS29-212ENST00000621131 BCORP1Q8N888 145 aa4.1□□□□□ -1.75
VPS29-212ENST00000621131 C17orf47Q8NEP4 570 aa4.1□□□□□ -1.75
VPS29-212ENST00000621131 BPIFB6Q8NFQ5 453 aa4.1□□□□□ -1.75
VPS29-212ENST00000621131 OR6T1Q8NGN1 323 aa4.1□□□□□ -1.75
VPS29-212ENST00000621131 WDR36Q8NI36 951 aaKnown RBP4.1□□□□□ -1.75
VPS29-212ENST00000621131 ZNF563Q8TA94 476 aa4.1□□□□□ -1.75
VPS29-212ENST00000621131 C9orf43Q8TAL5 461 aaPredicted RBP4.1□□□□□ -1.75
VPS29-212ENST00000621131 FANK1Q8TC84 345 aa4.1□□□□□ -1.75
VPS29-212ENST00000621131 SLC22A8Q8TCC7 542 aa4.1□□□□□ -1.75
VPS29-212ENST00000621131 ADAMTS16Q8TE57 1224 aa4.1□□□□□ -1.75
VPS29-212ENST00000621131 PHLDA1Q8WV24 401 aaPredicted RBP4.1□□□□□ -1.75
VPS29-212ENST00000621131 DNAJA4Q8WW22 397 aaPredicted RBP4.1□□□□□ -1.75
VPS29-212ENST00000621131 APOBEC4Q8WW27 367 aaKnown RBP4.1□□□□□ -1.75
VPS29-212ENST00000621131 TRUB1Q8WWH5 349 aaKnown RBP4.1□□□□□ -1.75
VPS29-212ENST00000621131 TMCO6Q96DC7 493 aa4.1□□□□□ -1.75
VPS29-212ENST00000621131 DGCR14Q96DF8 476 aaKnown RBP4.1□□□□□ -1.75
VPS29-212ENST00000621131 DTNBP1Q96EV8 351 aa4.1□□□□□ -1.75
VPS29-212ENST00000621131 VMP1Q96GC9 406 aa4.1□□□□□ -1.75
VPS29-212ENST00000621131 VSTM2LQ96N03 204 aa4.1□□□□□ -1.75
VPS29-212ENST00000621131 TSC22D3Q99576 134 aa4.1□□□□□ -1.75
VPS29-212ENST00000621131 NIPSNAP1Q9BPW8 284 aa4.1□□□□□ -1.75
VPS29-212ENST00000621131 EDEM2Q9BV94 578 aa4.1□□□□□ -1.75
VPS29-212ENST00000621131 TBL1XR1Q9BZK7 514 aa4.1□□□□□ -1.75
VPS29-212ENST00000621131 ULBP3Q9BZM4 244 aa4.1□□□□□ -1.75
VPS29-212ENST00000621131 WDR54Q9H977 334 aa4.1□□□□□ -1.75
VPS29-212ENST00000621131 TMEM9BQ9NQ34 198 aa4.1□□□□□ -1.75
VPS29-212ENST00000621131 CTPS2Q9NRF8 586 aa4.1□□□□□ -1.75
VPS29-212ENST00000621131 UBQLN4Q9NRR5 601 aa4.1□□□□□ -1.75
VPS29-212ENST00000621131 CHCHD3Q9NX63 227 aaKnown RBP4.1□□□□□ -1.75
VPS29-212ENST00000621131 SLC39A1Q9NY26 324 aa4.1□□□□□ -1.75
VPS29-212ENST00000621131 RSL24D1Q9UHA3 163 aaKnown RBP4.1□□□□□ -1.75
VPS29-212ENST00000621131 MED31Q9Y3C7 131 aa4.1□□□□□ -1.75
VPS29-212ENST00000621131 PCDH15Q96QU1 1955 aa4.1□□□□□ -1.75
VPS29-212ENST00000621131 SCN3AQ9NY46 2000 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 SPTBN1Q01082 2364 aaKnown RBP4.09□□□□□ -1.75
VPS29-212ENST00000621131 IGLV3-12A0A075B6K2 115 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 NPIPA5A0A0B4J1W7 369 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 TRBV4-1A0A0J9YWV2 114 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 A0A1W2PQD3 144 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 IDSB3KWA1 339 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 PTGES3LE9PB15 166 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 NPIPA7E9PJI5 369 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 H3BMH7 237 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 CHP2O43745 196 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 EIF4E2O60573 245 aaKnown RBP4.09□□□□□ -1.75
VPS29-212ENST00000621131 HCN1O60741 890 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 LRP3O75074 770 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 PTP4A3O75365 173 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 RCBTB2O95199 551 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 UTS2O95399 124 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 NUDT14O95848 222 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 HMGN1P05114 100 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 LINGO3P0C6S8 592 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 ZNF806P0C7X5 589 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 NPIPA8P0DM63 369 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 SAGP10523 405 aaPredicted RBP4.09□□□□□ -1.75
VPS29-212ENST00000621131 PNMTP11086 282 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 IFI30P13284 250 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 PGCP20142 388 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 PAICSP22234 425 aaKnown RBP4.09□□□□□ -1.75
VPS29-212ENST00000621131 FMO3P31513 532 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 MAP3K8P41279 467 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 GSSP48637 474 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 CCR4P51679 360 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 PNLIPRP2P54317 469 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 SIRPAP78324 504 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 RIGQ13278 110 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 EIF3IQ13347 325 aaKnown RBP4.09□□□□□ -1.75
VPS29-212ENST00000621131 C1DQ13901 141 aaKnown RBP4.09□□□□□ -1.75
VPS29-212ENST00000621131 EBPQ15125 230 aaKnown RBP4.09□□□□□ -1.75
VPS29-212ENST00000621131 PTGES3Q15185 160 aaKnown RBP4.09□□□□□ -1.75
VPS29-212ENST00000621131 SF3A2Q15428 464 aaKnown RBP4.09□□□□□ -1.75
VPS29-212ENST00000621131 NEDD8Q15843 81 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 EXT1Q16394 746 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 NNATQ16517 81 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 ZBED5Q49AG3 693 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 NADK2Q4G0N4 442 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 VWA2Q5GFL6 755 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 SLX4IPQ5VYV7 408 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 AP1ARQ63HQ0 302 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 FAAH2Q6GMR7 532 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 ZNF774Q6NX45 483 aa4.09□□□□□ -1.75
VPS29-212ENST00000621131 SLC27A4Q6P1M0 643 aa4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms