RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 RAB27BO00194 218 aa16.7■□□□□ 0.26
CPSF3-201ENST00000238112 ADAM10O14672 748 aa16.7■□□□□ 0.26
CPSF3-201ENST00000238112 HSD11B1P28845 292 aa16.7■□□□□ 0.26
CPSF3-201ENST00000238112 C11orf87Q6NUJ2 197 aa16.7■□□□□ 0.26
CPSF3-201ENST00000238112 WDFY1Q8IWB7 410 aa16.7■□□□□ 0.26
CPSF3-201ENST00000238112 CMBLQ96DG6 245 aa16.7■□□□□ 0.26
CPSF3-201ENST00000238112 FAM206AQ9NX38 181 aa16.7■□□□□ 0.26
CPSF3-201ENST00000238112 RHBDD3Q9Y3P4 386 aa16.7■□□□□ 0.26
CPSF3-201ENST00000238112 CEP290O15078 2479 aa16.69■□□□□ 0.26
CPSF3-201ENST00000238112 TNFSF12-TNFSF13A0A0A6YY99 330 aa16.69■□□□□ 0.26
CPSF3-201ENST00000238112 OR14I1A6ND48 311 aa16.69■□□□□ 0.26
CPSF3-201ENST00000238112 NPIPB13A6NJU9 1138 aa16.69■□□□□ 0.26
CPSF3-201ENST00000238112 NPIPB4C9JG80 1138 aa16.69■□□□□ 0.26
CPSF3-201ENST00000238112 CCSO14618 274 aa16.69■□□□□ 0.26
CPSF3-201ENST00000238112 SYT7O43581 403 aa16.69■□□□□ 0.26
CPSF3-201ENST00000238112 OR2F2O95006 317 aa16.69■□□□□ 0.26
CPSF3-201ENST00000238112 SRSF4Q08170 494 aaKnown RBP16.69■□□□□ 0.26
CPSF3-201ENST00000238112 OR2F1Q13607 317 aa16.69■□□□□ 0.26
CPSF3-201ENST00000238112 ZNF345Q14585 488 aa16.69■□□□□ 0.26
CPSF3-201ENST00000238112 ZMYND11Q15326 602 aa16.69■□□□□ 0.26
CPSF3-201ENST00000238112 LYG2Q86SG7 212 aa16.69■□□□□ 0.26
CPSF3-201ENST00000238112 SLC25A42Q86VD7 318 aa16.69■□□□□ 0.26
CPSF3-201ENST00000238112 SLC22A24Q8N4F4 322 aa16.69■□□□□ 0.26
CPSF3-201ENST00000238112 KCNRGQ8N5I3 272 aa16.69■□□□□ 0.26
CPSF3-201ENST00000238112 PLPP5Q8NEB5 264 aa16.69■□□□□ 0.26
CPSF3-201ENST00000238112 OR52N4Q8NGI2 321 aa16.69■□□□□ 0.26
CPSF3-201ENST00000238112 THAP3Q8WTV1 239 aaPredicted RBP16.69■□□□□ 0.26
CPSF3-201ENST00000238112 SLAMF6Q96DU3 332 aa16.69■□□□□ 0.26
CPSF3-201ENST00000238112 IFT46Q9NQC8 304 aa16.69■□□□□ 0.26
CPSF3-201ENST00000238112 PLEKHA6Q9Y2H5 1048 aa16.69■□□□□ 0.26
CPSF3-201ENST00000238112 BRWD1Q9NSI6 2320 aa16.69■□□□□ 0.26
CPSF3-201ENST00000238112 SLC25A4P12235 298 aa16.69■□□□□ 0.26
CPSF3-201ENST00000238112 STARP49675 285 aa16.69■□□□□ 0.26
CPSF3-201ENST00000238112 FOXL2P58012 376 aa16.69■□□□□ 0.26
CPSF3-201ENST00000238112 NXPH1P58417 271 aa16.69■□□□□ 0.26
CPSF3-201ENST00000238112 GVQW1Q8N7I0 195 aa16.69■□□□□ 0.26
CPSF3-201ENST00000238112 OR1M1Q8NGA1 313 aa16.69■□□□□ 0.26
CPSF3-201ENST00000238112 OR10K1Q8NGX5 313 aa16.69■□□□□ 0.26
CPSF3-201ENST00000238112 C11orf40Q8WZ69 217 aa16.69■□□□□ 0.26
CPSF3-201ENST00000238112 SEC22AQ96IW7 307 aa16.69■□□□□ 0.26
CPSF3-201ENST00000238112 MS4A7Q9GZW8 240 aaPredicted RBP16.69■□□□□ 0.26
CPSF3-201ENST00000238112 LMAN1LQ9HAT1 526 aa16.69■□□□□ 0.26
CPSF3-201ENST00000238112 TNFSF18Q9UNG2 199 aa16.69■□□□□ 0.26
CPSF3-201ENST00000238112 ARID1BQ8NFD5 2236 aaPredicted RBP16.68■□□□□ 0.26
CPSF3-201ENST00000238112 CDK2AP1O14519 115 aa16.68■□□□□ 0.26
CPSF3-201ENST00000238112 BPNT1O95861 308 aa16.68■□□□□ 0.26
CPSF3-201ENST00000238112 TTRP02766 147 aa16.68■□□□□ 0.26
CPSF3-201ENST00000238112 ZBTB25P24278 435 aa16.68■□□□□ 0.26
CPSF3-201ENST00000238112 ARSKQ6UWY0 536 aa16.68■□□□□ 0.26
CPSF3-201ENST00000238112 STPG2Q8N412 459 aa16.68■□□□□ 0.26
CPSF3-201ENST00000238112 ZDHHC22Q8N966 263 aa16.68■□□□□ 0.26
CPSF3-201ENST00000238112 NUDCD2Q8WVJ2 157 aa16.68■□□□□ 0.26
CPSF3-201ENST00000238112 VRK1Q99986 396 aaPredicted RBP16.68■□□□□ 0.26
CPSF3-201ENST00000238112 SLC7A5P2Q9GIP4 190 aa16.68■□□□□ 0.26
CPSF3-201ENST00000238112 PBOV1Q9GZY1 135 aa16.68■□□□□ 0.26
CPSF3-201ENST00000238112 C12orf4Q9NQ89 552 aa16.68■□□□□ 0.26
CPSF3-201ENST00000238112 FGF21Q9NSA1 209 aa16.68■□□□□ 0.26
CPSF3-201ENST00000238112 WIPF3A6NGB9 483 aa16.68■□□□□ 0.26
CPSF3-201ENST00000238112 VSTM2BA6NLU5 285 aa16.68■□□□□ 0.26
CPSF3-201ENST00000238112 FAM25EA8MYX2 175 aa16.68■□□□□ 0.26
CPSF3-201ENST00000238112 H3BML4 177 aa16.68■□□□□ 0.26
CPSF3-201ENST00000238112 SCGNO76038 276 aa16.68■□□□□ 0.26
CPSF3-201ENST00000238112 STK17BO94768 372 aa16.68■□□□□ 0.26
CPSF3-201ENST00000238112 DCNP07585 359 aaKnown RBP16.68■□□□□ 0.26
CPSF3-201ENST00000238112 MPZP25189 248 aa16.68■□□□□ 0.26
CPSF3-201ENST00000238112 SUMO3P55854 103 aaPredicted RBP16.68■□□□□ 0.26
CPSF3-201ENST00000238112 BIDP55957 195 aa16.68■□□□□ 0.26
CPSF3-201ENST00000238112 IL13RA1P78552 427 aa16.68■□□□□ 0.26
CPSF3-201ENST00000238112 FOXF1Q12946 379 aa16.68■□□□□ 0.26
CPSF3-201ENST00000238112 UNC119Q13432 240 aa16.68■□□□□ 0.26
CPSF3-201ENST00000238112 PPP1R1AQ13522 171 aa16.68■□□□□ 0.26
CPSF3-201ENST00000238112 OR52W1Q6IF63 320 aa16.68■□□□□ 0.26
CPSF3-201ENST00000238112 JMJD6Q6NYC1 403 aaPredicted RBP16.68■□□□□ 0.26
CPSF3-201ENST00000238112 PAQR4Q8N4S7 273 aaPredicted RBP16.68■□□□□ 0.26
CPSF3-201ENST00000238112 OR5D14Q8NGL3 314 aa16.68■□□□□ 0.26
CPSF3-201ENST00000238112 PPP1R1CQ8WVI7 109 aa16.68■□□□□ 0.26
CPSF3-201ENST00000238112 ADAT3Q96EY9 351 aaPredicted RBP16.68■□□□□ 0.26
CPSF3-201ENST00000238112 PHB2Q99623 299 aa16.68■□□□□ 0.26
CPSF3-201ENST00000238112 UQCC2Q9BRT2 126 aa16.68■□□□□ 0.26
CPSF3-201ENST00000238112 EMC6Q9BV81 110 aa16.68■□□□□ 0.26
CPSF3-201ENST00000238112 CST11Q9H112 138 aa16.68■□□□□ 0.26
CPSF3-201ENST00000238112 RASL12Q9NYN1 266 aa16.68■□□□□ 0.26
CPSF3-201ENST00000238112 EYSQ5T1H1 3165 aa16.67■□□□□ 0.26
CPSF3-201ENST00000238112 BCL2L11O43521 198 aa16.67■□□□□ 0.26
CPSF3-201ENST00000238112 PIAS2O75928 621 aa16.67■□□□□ 0.26
CPSF3-201ENST00000238112 RAB3AP20336 220 aa16.67■□□□□ 0.26
CPSF3-201ENST00000238112 DLSTP36957 453 aa16.67■□□□□ 0.26
CPSF3-201ENST00000238112 LUMP51884 338 aaPredicted RBP16.67■□□□□ 0.26
CPSF3-201ENST00000238112 FAM74A1Q5RGS3 127 aa16.67■□□□□ 0.26
CPSF3-201ENST00000238112 PTGES2Q9H7Z7 377 aa16.67■□□□□ 0.26
CPSF3-201ENST00000238112 ZC4H2Q9NQZ6 224 aa16.67■□□□□ 0.26
CPSF3-201ENST00000238112 C9orf170A2RU37 121 aa16.67■□□□□ 0.26
CPSF3-201ENST00000238112 ZNF208O43345 1280 aa16.67■□□□□ 0.26
CPSF3-201ENST00000238112 VSIG8P0DPA2 414 aa16.67■□□□□ 0.26
CPSF3-201ENST00000238112 HRH1P35367 487 aa16.67■□□□□ 0.26
CPSF3-201ENST00000238112 CD96P40200 585 aa16.67■□□□□ 0.26
CPSF3-201ENST00000238112 GPR85P60893 370 aa16.67■□□□□ 0.26
CPSF3-201ENST00000238112 ATXN7L3Q14CW9 347 aaPredicted RBP16.67■□□□□ 0.26
CPSF3-201ENST00000238112 TFAP2EQ6VUC0 442 aa16.67■□□□□ 0.26
CPSF3-201ENST00000238112 OR13C9Q8NGT0 318 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms