RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 MED19A0JLT2 244 aaPredicted RBP7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 EEF1E1-BLOC1S5C9J1V9 151 aa7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 H7C1Q1 480 aa7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 AIPO00170 330 aa7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 EFSO43281 561 aa7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 ACAA1P09110 424 aaPredicted RBP7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 FAM87AP0C7U9 286 aa7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 OSMP13725 252 aa7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 PGCP20142 388 aa7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 VAMP1P23763 118 aa7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 ELAVL4P26378 380 aaKnown RBP7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 DPP4P27487 766 aa7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 ADH6P28332 368 aa7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 MLF1P58340 268 aa7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 C3AR1Q16581 482 aa7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 SYT14P1Q58G82 188 aa7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 WIPI1Q5MNZ9 446 aaPredicted RBP7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 FAM69AQ5T7M9 428 aa7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 TSEN54Q7Z6J9 526 aaKnown RBP7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 PNPLA5Q7Z6Z6 429 aaPredicted RBP7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 DUSP18Q8NEJ0 188 aa7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 AKR7LQ8NHP1 331 aa7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 PIGXQ8TBF5 258 aa7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 OR5B2Q96R09 309 aa7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 C20orf141Q9NUB4 165 aa7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 MED31Q9Y3C7 131 aa7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 TNRC6AQ8NDV7 1962 aaKnown RBP7.78□□□□□ -1.16
LIMCH1-209ENST00000509277 A0A1W2PRQ8 180 aa7.78□□□□□ -1.16
LIMCH1-209ENST00000509277 MFSD2BA6NFX1 497 aa7.78□□□□□ -1.16
LIMCH1-209ENST00000509277 DCTDP32321 178 aa7.78□□□□□ -1.16
LIMCH1-209ENST00000509277 HOXA1P49639 335 aaPredicted RBP7.78□□□□□ -1.16
LIMCH1-209ENST00000509277 FOXF1Q12946 379 aa7.78□□□□□ -1.16
LIMCH1-209ENST00000509277 OTPQ5XKR4 325 aa7.78□□□□□ -1.16
LIMCH1-209ENST00000509277 CD276Q5ZPR3 534 aa7.78□□□□□ -1.16
LIMCH1-209ENST00000509277 ZNF546Q86UE3 836 aa7.78□□□□□ -1.16
LIMCH1-209ENST00000509277 OR13C2Q8NGS9 318 aa7.78□□□□□ -1.16
LIMCH1-209ENST00000509277 OR4Q3Q8NH05 313 aa7.78□□□□□ -1.16
LIMCH1-209ENST00000509277 TMEM239Q8WW34 195 aa7.78□□□□□ -1.16
LIMCH1-209ENST00000509277 PTDSS2Q9BVG9 487 aa7.78□□□□□ -1.16
LIMCH1-209ENST00000509277 ZNF275Q9NSD4 429 aaPredicted RBP7.78□□□□□ -1.16
LIMCH1-209ENST00000509277 SLC35A3Q9Y2D2 325 aa7.78□□□□□ -1.16
LIMCH1-209ENST00000509277 POLEQ07864 2286 aa7.78□□□□□ -1.16
LIMCH1-209ENST00000509277 IGHV3-15A0A0B4J1V0 119 aa7.78□□□□□ -1.16
LIMCH1-209ENST00000509277 FAM171A2A8MVW0 826 aa7.78□□□□□ -1.16
LIMCH1-209ENST00000509277 SULT1B1O43704 296 aa7.78□□□□□ -1.16
LIMCH1-209ENST00000509277 OR6A2O95222 327 aa7.78□□□□□ -1.16
LIMCH1-209ENST00000509277 F13BP05160 661 aa7.78□□□□□ -1.16
LIMCH1-209ENST00000509277 TBXA2RP21731 343 aa7.78□□□□□ -1.16
LIMCH1-209ENST00000509277 CD82P27701 267 aa7.78□□□□□ -1.16
LIMCH1-209ENST00000509277 GALNSP34059 522 aa7.78□□□□□ -1.16
LIMCH1-209ENST00000509277 GIPRP48546 466 aa7.78□□□□□ -1.16
LIMCH1-209ENST00000509277 ZNF136P52737 540 aa7.78□□□□□ -1.16
LIMCH1-209ENST00000509277 SEC61A1P61619 476 aaKnown RBP7.78□□□□□ -1.16
LIMCH1-209ENST00000509277 C17orf67Q0P5P2 114 aa7.78□□□□□ -1.16
LIMCH1-209ENST00000509277 GSG1Q2KHT4 349 aa7.78□□□□□ -1.16
LIMCH1-209ENST00000509277 EIF2S3LQ2VIR3 472 aaKnown RBP7.78□□□□□ -1.16
LIMCH1-209ENST00000509277 TMEM176BQ3YBM2 270 aaPredicted RBP7.78□□□□□ -1.16
LIMCH1-209ENST00000509277 WDR88Q6ZMY6 472 aa7.78□□□□□ -1.16
LIMCH1-209ENST00000509277 CPOQ8IVL8 374 aa7.78□□□□□ -1.16
LIMCH1-209ENST00000509277 OR1M1Q8NGA1 313 aa7.78□□□□□ -1.16
LIMCH1-209ENST00000509277 CD300LFQ8TDQ1 290 aa7.78□□□□□ -1.16
LIMCH1-209ENST00000509277 MAFIPQ8WZ33 124 aa7.78□□□□□ -1.16
LIMCH1-209ENST00000509277 ZNF524Q96C55 264 aa7.78□□□□□ -1.16
LIMCH1-209ENST00000509277 LURAP1Q96LR2 239 aa7.78□□□□□ -1.16
LIMCH1-209ENST00000509277 DMRTA2Q96SC8 542 aa7.78□□□□□ -1.16
LIMCH1-209ENST00000509277 IFT27Q9BW83 186 aa7.78□□□□□ -1.16
LIMCH1-209ENST00000509277 PAPOLGQ9BWT3 736 aaKnown RBP7.78□□□□□ -1.16
LIMCH1-209ENST00000509277 PLA2G12AQ9BZM1 189 aa7.78□□□□□ -1.16
LIMCH1-209ENST00000509277 SDHAF3Q9NRP4 125 aa7.78□□□□□ -1.16
LIMCH1-209ENST00000509277 GLS2Q9UI32 602 aa7.78□□□□□ -1.16
LIMCH1-209ENST00000509277 NOP16Q9Y3C1 178 aaKnown RBP7.78□□□□□ -1.16
LIMCH1-209ENST00000509277 WIF1Q9Y5W5 379 aa7.78□□□□□ -1.16
LIMCH1-209ENST00000509277 URGCP-MRPS24S4R325 110 aa7.78□□□□□ -1.16
LIMCH1-209ENST00000509277 PKD1L2Q7Z442 2459 aa7.78□□□□□ -1.16
LIMCH1-209ENST00000509277 HIST1H2ABP04908 130 aa7.77□□□□□ -1.16
LIMCH1-209ENST00000509277 HMGN1P05114 100 aa7.77□□□□□ -1.16
LIMCH1-209ENST00000509277 THBS1P07996 1170 aa7.77□□□□□ -1.16
LIMCH1-209ENST00000509277 RFPL3SP0C7P2 107 aa7.77□□□□□ -1.16
LIMCH1-209ENST00000509277 IL11P20809 199 aa7.77□□□□□ -1.16
LIMCH1-209ENST00000509277 PSMB10P40306 273 aa7.77□□□□□ -1.16
LIMCH1-209ENST00000509277 CBFBQ13951 182 aa7.77□□□□□ -1.16
LIMCH1-209ENST00000509277 PEA15Q15121 130 aa7.77□□□□□ -1.16
LIMCH1-209ENST00000509277 CPEB4Q17RY0 729 aaKnown RBP eCLIP7.77□□□□□ -1.16
LIMCH1-209ENST00000509277 ALKBH2Q6NS38 261 aa7.77□□□□□ -1.16
LIMCH1-209ENST00000509277 GDPGP1Q6ZNW5 385 aa7.77□□□□□ -1.16
LIMCH1-209ENST00000509277 HIST3H2AQ7L7L0 130 aa7.77□□□□□ -1.16
LIMCH1-209ENST00000509277 NUP54Q7Z3B4 507 aa7.77□□□□□ -1.16
LIMCH1-209ENST00000509277 OAFQ86UD1 273 aa7.77□□□□□ -1.16
LIMCH1-209ENST00000509277 OR1S2Q8NGQ3 325 aa7.77□□□□□ -1.16
LIMCH1-209ENST00000509277 SCARB1Q8WTV0 552 aa7.77□□□□□ -1.16
LIMCH1-209ENST00000509277 HSD17B8Q92506 261 aa7.77□□□□□ -1.16
LIMCH1-209ENST00000509277 PSMF1Q92530 271 aa7.77□□□□□ -1.16
LIMCH1-209ENST00000509277 HIST1H2ACQ93077 130 aa7.77□□□□□ -1.16
LIMCH1-209ENST00000509277 ZNF582Q96NG8 517 aaPredicted RBP7.77□□□□□ -1.16
LIMCH1-209ENST00000509277 FOXN4Q96NZ1 517 aa7.77□□□□□ -1.16
LIMCH1-209ENST00000509277 DERL3Q96Q80 235 aa7.77□□□□□ -1.16
LIMCH1-209ENST00000509277 ZNF559Q9BR84 538 aa7.77□□□□□ -1.16
LIMCH1-209ENST00000509277 GABARAPL3Q9BY60 117 aa7.77□□□□□ -1.16
LIMCH1-209ENST00000509277 TRIM2Q9C040 744 aa7.77□□□□□ -1.16
LIMCH1-209ENST00000509277 GPN1Q9HCN4 374 aaPredicted RBP7.77□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms