RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 HIST1H3AP68431 136 aa13.97□□□□□ -0.17
CCDC28B-204ENST00000469003 HIST2H3PS2Q5TEC6 136 aa13.97□□□□□ -0.17
CCDC28B-204ENST00000469003 FBXW12Q6X9E4 464 aa13.97□□□□□ -0.17
CCDC28B-204ENST00000469003 HIST2H3AQ71DI3 136 aa13.97□□□□□ -0.17
CCDC28B-204ENST00000469003 LRRC28Q86X40 367 aaPredicted RBP13.97□□□□□ -0.17
CCDC28B-204ENST00000469003 KLHL36Q8N4N3 616 aa13.97□□□□□ -0.17
CCDC28B-204ENST00000469003 RNF148Q8N7C7 305 aa13.97□□□□□ -0.17
CCDC28B-204ENST00000469003 GJC3Q8NFK1 279 aa13.97□□□□□ -0.17
CCDC28B-204ENST00000469003 OR5L1Q8NGL2 311 aa13.97□□□□□ -0.17
CCDC28B-204ENST00000469003 FANK1Q8TC84 345 aa13.97□□□□□ -0.17
CCDC28B-204ENST00000469003 FAM216AQ8WUB2 273 aa13.97□□□□□ -0.17
CCDC28B-204ENST00000469003 TSSK2Q96PF2 358 aa13.97□□□□□ -0.17
CCDC28B-204ENST00000469003 ERMAPQ96PL5 475 aaPredicted RBP13.97□□□□□ -0.17
CCDC28B-204ENST00000469003 SIGLEC11Q96RL6 698 aa13.97□□□□□ -0.17
CCDC28B-204ENST00000469003 COQ7Q99807 217 aa13.97□□□□□ -0.17
CCDC28B-204ENST00000469003 RBM4Q9BWF3 364 aaKnown RBP13.97□□□□□ -0.17
CCDC28B-204ENST00000469003 HDHD2Q9H0R4 259 aa13.97□□□□□ -0.17
CCDC28B-204ENST00000469003 PATZ1Q9HBE1 687 aaKnown RBP13.97□□□□□ -0.17
CCDC28B-204ENST00000469003 PPP1R3CQ9UQK1 317 aa13.97□□□□□ -0.17
CCDC28B-204ENST00000469003 POLR3KQ9Y2Y1 108 aaPredicted RBP13.97□□□□□ -0.17
CCDC28B-204ENST00000469003 IGLV1-36A0A0B4J1U3 117 aa13.96□□□□□ -0.17
CCDC28B-204ENST00000469003 DCTN6O00399 190 aa13.96□□□□□ -0.17
CCDC28B-204ENST00000469003 GADD45GO95257 159 aa13.96□□□□□ -0.17
CCDC28B-204ENST00000469003 PPP1R3DO95685 299 aa13.96□□□□□ -0.17
CCDC28B-204ENST00000469003 GPANK1O95872 356 aa13.96□□□□□ -0.17
CCDC28B-204ENST00000469003 SEMG1P04279 462 aa13.96□□□□□ -0.17
CCDC28B-204ENST00000469003 CFPP27918 469 aa13.96□□□□□ -0.17
CCDC28B-204ENST00000469003 CENPAP49450 140 aa13.96□□□□□ -0.17
CCDC28B-204ENST00000469003 BTG1P62324 171 aa13.96□□□□□ -0.17
CCDC28B-204ENST00000469003 SPIBQ01892 262 aa13.96□□□□□ -0.17
CCDC28B-204ENST00000469003 RFX4Q33E94 735 aa13.96□□□□□ -0.17
CCDC28B-204ENST00000469003 APOBEC3DQ96AK3 386 aaPredicted RBP13.96□□□□□ -0.17
CCDC28B-204ENST00000469003 PYURFQ96I23 114 aa13.96□□□□□ -0.17
CCDC28B-204ENST00000469003 OR2V2Q96R30 315 aa13.96□□□□□ -0.17
CCDC28B-204ENST00000469003 SLC6A7Q99884 636 aa13.96□□□□□ -0.17
CCDC28B-204ENST00000469003 OR52D1Q9H346 318 aa13.96□□□□□ -0.17
CCDC28B-204ENST00000469003 PTTG3PQ9NZH4 202 aa13.96□□□□□ -0.17
CCDC28B-204ENST00000469003 MAGEL2Q9UJ55 1249 aa13.96□□□□□ -0.17
CCDC28B-204ENST00000469003 B9D1Q9UPM9 204 aa13.96□□□□□ -0.17
CCDC28B-204ENST00000469003 LHFPL6Q9Y693 200 aa13.96□□□□□ -0.17
CCDC28B-204ENST00000469003 V9GYQ6 96 aa13.96□□□□□ -0.17
CCDC28B-204ENST00000469003 IFNL4K9M1U5 179 aa13.95□□□□□ -0.18
CCDC28B-204ENST00000469003 ARPC3O15145 178 aa13.95□□□□□ -0.18
CCDC28B-204ENST00000469003 RENP00797 406 aa13.95□□□□□ -0.18
CCDC28B-204ENST00000469003 HSD17B1P14061 328 aa13.95□□□□□ -0.18
CCDC28B-204ENST00000469003 SLC6A6P31641 620 aa13.95□□□□□ -0.18
CCDC28B-204ENST00000469003 RBMXP38159 391 aaKnown RBP13.95□□□□□ -0.18
CCDC28B-204ENST00000469003 COMPP49747 757 aaPredicted RBP13.95□□□□□ -0.18
CCDC28B-204ENST00000469003 COX10Q12887 443 aa13.95□□□□□ -0.18
CCDC28B-204ENST00000469003 HLXQ14774 488 aaPredicted RBP13.95□□□□□ -0.18
CCDC28B-204ENST00000469003 ZMYND11Q15326 602 aa13.95□□□□□ -0.18
CCDC28B-204ENST00000469003 MEP1BQ16820 701 aa13.95□□□□□ -0.18
CCDC28B-204ENST00000469003 OR2T2Q6IF00 324 aa13.95□□□□□ -0.18
CCDC28B-204ENST00000469003 SLC27A4Q6P1M0 643 aa13.95□□□□□ -0.18
CCDC28B-204ENST00000469003 LEG1Q6P5S2 330 aa13.95□□□□□ -0.18
CCDC28B-204ENST00000469003 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.95□□□□□ -0.18
CCDC28B-204ENST00000469003 JAZF1Q86VZ6 243 aa13.95□□□□□ -0.18
CCDC28B-204ENST00000469003 OR5AS1Q8N127 324 aa13.95□□□□□ -0.18
CCDC28B-204ENST00000469003 BPIFB2Q8N4F0 458 aa13.95□□□□□ -0.18
CCDC28B-204ENST00000469003 ATG16L2Q8NAA4 619 aa13.95□□□□□ -0.18
CCDC28B-204ENST00000469003 OR8G5Q8NG78 346 aa13.95□□□□□ -0.18
CCDC28B-204ENST00000469003 OR13G1Q8NGZ3 307 aa13.95□□□□□ -0.18
CCDC28B-204ENST00000469003 SRA1Q9HD15 236 aaKnown RBP13.95□□□□□ -0.18
CCDC28B-204ENST00000469003 GCM1Q9NP62 436 aa13.95□□□□□ -0.18
CCDC28B-204ENST00000469003 TMEM89A2RUT3 159 aa13.94□□□□□ -0.18
CCDC28B-204ENST00000469003 A8MXK9 166 aa13.94□□□□□ -0.18
CCDC28B-204ENST00000469003 F5H0A9 414 aaPredicted RBP13.94□□□□□ -0.18
CCDC28B-204ENST00000469003 TMEM178BH3BS89 294 aa13.94□□□□□ -0.18
CCDC28B-204ENST00000469003 SPRY1O43609 319 aaPredicted RBP13.94□□□□□ -0.18
CCDC28B-204ENST00000469003 SNX3O60493 162 aa13.94□□□□□ -0.18
CCDC28B-204ENST00000469003 FPR3P25089 353 aa13.94□□□□□ -0.18
CCDC28B-204ENST00000469003 FPR2P25090 351 aa13.94□□□□□ -0.18
CCDC28B-204ENST00000469003 MDH2P40926 338 aaKnown RBP13.94□□□□□ -0.18
CCDC28B-204ENST00000469003 SLC6A9P48067 706 aa13.94□□□□□ -0.18
CCDC28B-204ENST00000469003 MMP16P51512 607 aa13.94□□□□□ -0.18
CCDC28B-204ENST00000469003 CORO6Q6QEF8 472 aa13.94□□□□□ -0.18
CCDC28B-204ENST00000469003 OR6V1Q8N148 313 aa13.94□□□□□ -0.18
CCDC28B-204ENST00000469003 MUC20Q8N307 709 aaPredicted RBP13.94□□□□□ -0.18
CCDC28B-204ENST00000469003 DEFB108BQ8NET1 73 aa13.94□□□□□ -0.18
CCDC28B-204ENST00000469003 SLC26A10Q8NG04 563 aa13.94□□□□□ -0.18
CCDC28B-204ENST00000469003 POP5Q969H6 163 aaKnown RBP13.94□□□□□ -0.18
CCDC28B-204ENST00000469003 MCUR1Q96AQ8 359 aa13.94□□□□□ -0.18
CCDC28B-204ENST00000469003 NMNAT3Q96T66 252 aa13.94□□□□□ -0.18
CCDC28B-204ENST00000469003 FAM107BQ9H098 131 aa13.94□□□□□ -0.18
CCDC28B-204ENST00000469003 NSRP1Q9H0G5 558 aaKnown RBP13.94□□□□□ -0.18
CCDC28B-204ENST00000469003 MMP26Q9NRE1 261 aa13.94□□□□□ -0.18
CCDC28B-204ENST00000469003 IQCF6A8MYZ5 107 aa13.93□□□□□ -0.18
CCDC28B-204ENST00000469003 TRAPPC2LH3BP13 241 aa13.93□□□□□ -0.18
CCDC28B-204ENST00000469003 OR10H3O60404 316 aa13.93□□□□□ -0.18
CCDC28B-204ENST00000469003 HIST1H1CP16403 213 aaKnown RBP13.93□□□□□ -0.18
CCDC28B-204ENST00000469003 ZNF12P17014 697 aa13.93□□□□□ -0.18
CCDC28B-204ENST00000469003 IFNGR2P38484 337 aa13.93□□□□□ -0.18
CCDC28B-204ENST00000469003 GSSP48637 474 aa13.93□□□□□ -0.18
CCDC28B-204ENST00000469003 SRP9P49458 86 aaKnown RBP13.93□□□□□ -0.18
CCDC28B-204ENST00000469003 SEC61A1P61619 476 aaKnown RBP13.93□□□□□ -0.18
CCDC28B-204ENST00000469003 ZNF154Q13106 437 aa13.93□□□□□ -0.18
CCDC28B-204ENST00000469003 RSPO1Q2MKA7 263 aaPredicted RBP13.93□□□□□ -0.18
CCDC28B-204ENST00000469003 KRTAP27-1Q3LI81 207 aa13.93□□□□□ -0.18
CCDC28B-204ENST00000469003 SLC36A3Q495N2 470 aa13.93□□□□□ -0.18
CCDC28B-204ENST00000469003 SAMD4BQ5PRF9 694 aaKnown RBP13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms