RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 RERGLQ9H628 205 aa5.98□□□□□ -1.45
VPS41-208ENST00000448833 PATZ1Q9HBE1 687 aaKnown RBP5.98□□□□□ -1.45
VPS41-208ENST00000448833 SPAG4Q9NPE6 437 aa5.98□□□□□ -1.45
VPS41-208ENST00000448833 VSX1Q9NZR4 365 aaPredicted RBP5.98□□□□□ -1.45
VPS41-208ENST00000448833 ARMCX1Q9P291 453 aa5.98□□□□□ -1.45
VPS41-208ENST00000448833 ASH2LQ9UBL3 628 aa5.98□□□□□ -1.45
VPS41-208ENST00000448833 MIOXQ9UGB7 285 aa5.98□□□□□ -1.45
VPS41-208ENST00000448833 OR5V1Q9UGF6 321 aa5.98□□□□□ -1.45
VPS41-208ENST00000448833 EGFL7Q9UHF1 273 aa5.98□□□□□ -1.45
VPS41-208ENST00000448833 NUP50Q9UKX7 468 aa5.98□□□□□ -1.45
VPS41-208ENST00000448833 LRCH1Q9Y2L9 728 aa5.98□□□□□ -1.45
VPS41-208ENST00000448833 POLR1DQ9Y2S0 133 aa5.98□□□□□ -1.45
VPS41-208ENST00000448833 ADAM18Q9Y3Q7 739 aa5.98□□□□□ -1.45
VPS41-208ENST00000448833 SNX13Q9Y5W8 968 aa5.98□□□□□ -1.45
VPS41-208ENST00000448833 AUP1Q9Y679 476 aa5.98□□□□□ -1.45
VPS41-208ENST00000448833 CACNG2Q9Y698 323 aa5.98□□□□□ -1.45
VPS41-208ENST00000448833 UNC119BA6NIH7 251 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 J3KTA2 159 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 NME4O00746 187 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 SOCS2O14508 198 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 CDC42EP2O14613 210 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 ARPC3O15145 178 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 GADD45GO95257 159 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 TXNDC12O95881 172 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 NOS3P29474 1203 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 PRDX6P30041 224 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 SLC6A6P31641 620 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 MDH1P40925 334 aaKnown RBP5.97□□□□□ -1.45
VPS41-208ENST00000448833 MTNR1AP48039 350 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 CENPAP49450 140 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 GSK3BP49841 420 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 NUDT2P50583 147 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 BPIFB3P59826 476 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 PRR20EP86478 221 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 PRR20CP86479 221 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 PRR20DP86480 221 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 PRR20BP86481 221 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 PRR20AP86496 221 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 MZT1Q08AG7 82 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 KCNJ8Q15842 424 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 ZNF181Q2M3W8 571 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 SPATS1Q496A3 300 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 MESTQ5EB52 335 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 FGD3Q5JSP0 725 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 GLYATQ6IB77 296 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 RPL13AP3Q6NVV1 102 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 C8orf82Q6P1X6 216 aaPredicted RBP5.97□□□□□ -1.45
VPS41-208ENST00000448833 TBPL2Q6SJ96 375 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 LRRN1Q6UXK5 716 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 C1orf229Q6ZS94 237 aaPredicted RBP5.97□□□□□ -1.45
VPS41-208ENST00000448833 JAZF1Q86VZ6 243 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 POU5F2Q8N7G0 328 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 CLDN22Q8N7P3 220 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 CELF2-AS1Q8N7Q2 184 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 OR8G5Q8NG78 346 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 OR2AJ1Q8NGZ0 328 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 SLC25A28Q96A46 364 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 FAM46AQ96IP4 442 aaKnown RBP5.97□□□□□ -1.45
VPS41-208ENST00000448833 RSRC1Q96IZ7 334 aaKnown RBP5.97□□□□□ -1.45
VPS41-208ENST00000448833 OR2V2Q96R30 315 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 COQ7Q99807 217 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 SLC22A4Q9H015 551 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 NUAK2Q9H093 628 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 SYT4Q9H2B2 425 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 GORASP2Q9H8Y8 452 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 GCM1Q9NP62 436 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 EMC7Q9NPA0 242 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 TRIM36Q9NQ86 728 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 DCAF13Q9NV06 445 aaKnown RBP5.97□□□□□ -1.45
VPS41-208ENST00000448833 TMEM100Q9NV29 134 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 NDE1Q9NXR1 346 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 ADA2Q9NZK5 511 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 NDUFAF4Q9P032 175 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 ABCD2Q9UBJ2 740 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 KCNG2Q9UJ96 466 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 TMCC3Q9ULS5 477 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 SIGLEC7Q9Y286 467 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 COA3Q9Y2R0 106 aaPredicted RBP5.97□□□□□ -1.45
VPS41-208ENST00000448833 STARD10Q9Y365 291 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 IER3IP1Q9Y5U9 82 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 ANK2Q01484 3957 aa5.97□□□□□ -1.45
VPS41-208ENST00000448833 TENM1Q9UKZ4 2725 aa5.96□□□□□ -1.46
VPS41-208ENST00000448833 A8MXK9 166 aa5.96□□□□□ -1.46
VPS41-208ENST00000448833 IQCF6A8MYZ5 107 aa5.96□□□□□ -1.46
VPS41-208ENST00000448833 TMEM178BH3BS89 294 aa5.96□□□□□ -1.46
VPS41-208ENST00000448833 H7C1C5 153 aa5.96□□□□□ -1.46
VPS41-208ENST00000448833 SPRY1O43609 319 aaPredicted RBP5.96□□□□□ -1.46
VPS41-208ENST00000448833 SASH3O75995 380 aa5.96□□□□□ -1.46
VPS41-208ENST00000448833 KRT36O76013 467 aa5.96□□□□□ -1.46
VPS41-208ENST00000448833 AVPP01185 164 aa5.96□□□□□ -1.46
VPS41-208ENST00000448833 FSHBP01225 129 aa5.96□□□□□ -1.46
VPS41-208ENST00000448833 CTLA4P16410 223 aa5.96□□□□□ -1.46
VPS41-208ENST00000448833 ZNF823P16415 610 aa5.96□□□□□ -1.46
VPS41-208ENST00000448833 ZNF12P17014 697 aa5.96□□□□□ -1.46
VPS41-208ENST00000448833 PRTN3P24158 256 aa5.96□□□□□ -1.46
VPS41-208ENST00000448833 OMPP47874 163 aa5.96□□□□□ -1.46
VPS41-208ENST00000448833 NPY4RP50391 375 aa5.96□□□□□ -1.46
VPS41-208ENST00000448833 RAD23AP54725 363 aa5.96□□□□□ -1.46
VPS41-208ENST00000448833 TPTEP56180 551 aa5.96□□□□□ -1.46
VPS41-208ENST00000448833 PSME3P61289 254 aa5.96□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms