RNA–Protein interactions for RNA: ENST00000324340.13

DDX39A-202, Transcript of DExD-box helicase 39A, humanhuman

TSL 1 (best)

Gene DDX39A, Length 1,355 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-202ENST00000324340 RNF128Q8TEB7 428 aa11.31□□□□□ -0.6
DDX39A-202ENST00000324340 PNPLA2Q96AD5 504 aa11.31□□□□□ -0.6
DDX39A-202ENST00000324340 KCTD12Q96CX2 325 aaKnown RBP11.31□□□□□ -0.6
DDX39A-202ENST00000324340 TSSK2Q96PF2 358 aa11.31□□□□□ -0.6
DDX39A-202ENST00000324340 ZNF649Q9BS31 505 aa11.31□□□□□ -0.6
DDX39A-202ENST00000324340 ZNF416Q9BWM5 594 aa11.31□□□□□ -0.6
DDX39A-202ENST00000324340 PRDM14Q9GZV8 571 aa11.31□□□□□ -0.6
DDX39A-202ENST00000324340 EXO5Q9H790 373 aa11.31□□□□□ -0.6
DDX39A-202ENST00000324340 INPP5EQ9NRR6 644 aa11.31□□□□□ -0.6
DDX39A-202ENST00000324340 RDH8Q9NYR8 311 aa11.31□□□□□ -0.6
DDX39A-202ENST00000324340 ING1Q9UK53 422 aaPredicted RBP11.31□□□□□ -0.6
DDX39A-202ENST00000324340 B9D1Q9UPM9 204 aa11.31□□□□□ -0.6
DDX39A-202ENST00000324340 EXOSC1Q9Y3B2 195 aaKnown RBP11.31□□□□□ -0.6
DDX39A-202ENST00000324340 URB1O60287 2271 aaKnown RBP11.31□□□□□ -0.6
DDX39A-202ENST00000324340 MED12Q93074 2177 aa11.31□□□□□ -0.6
DDX39A-202ENST00000324340 IGKV3D-15A0A087WSY6 115 aa11.3□□□□□ -0.6
DDX39A-202ENST00000324340 IGLV1-36A0A0B4J1U3 117 aa11.3□□□□□ -0.6
DDX39A-202ENST00000324340 LINC00854A0A1B0GVQ3 168 aa11.3□□□□□ -0.6
DDX39A-202ENST00000324340 A0A1B0GW55 424 aa11.3□□□□□ -0.6
DDX39A-202ENST00000324340 MPTX1A8MV57 137 aa11.3□□□□□ -0.6
DDX39A-202ENST00000324340 A8MXK9 166 aa11.3□□□□□ -0.6
DDX39A-202ENST00000324340 SULT1B1O43704 296 aa11.3□□□□□ -0.6
DDX39A-202ENST00000324340 ZNF432O94892 652 aa11.3□□□□□ -0.6
DDX39A-202ENST00000324340 IGHG1P01857 330 aa11.3□□□□□ -0.6
DDX39A-202ENST00000324340 CRYABP02511 175 aaKnown RBP11.3□□□□□ -0.6
DDX39A-202ENST00000324340 DUX4L2P0CJ85 424 aa11.3□□□□□ -0.6
DDX39A-202ENST00000324340 DUX4L3P0CJ86 424 aa11.3□□□□□ -0.6
DDX39A-202ENST00000324340 DUX4L4P0CJ87 422 aa11.3□□□□□ -0.6
DDX39A-202ENST00000324340 DUX4L5P0CJ88 424 aa11.3□□□□□ -0.6
DDX39A-202ENST00000324340 DUX4L6P0CJ89 424 aa11.3□□□□□ -0.6
DDX39A-202ENST00000324340 DUX4L7P0CJ90 424 aa11.3□□□□□ -0.6
DDX39A-202ENST00000324340 LIMS3P0CW19 117 aa11.3□□□□□ -0.6
DDX39A-202ENST00000324340 LIMS4P0CW20 117 aa11.3□□□□□ -0.6
DDX39A-202ENST00000324340 GABRA5P31644 462 aa11.3□□□□□ -0.6
DDX39A-202ENST00000324340 BLVRAP53004 296 aa11.3□□□□□ -0.6
DDX39A-202ENST00000324340 CLDN17P56750 224 aa11.3□□□□□ -0.6
DDX39A-202ENST00000324340 SRYQ05066 204 aa11.3□□□□□ -0.6
DDX39A-202ENST00000324340 FCN2Q15485 313 aa11.3□□□□□ -0.6
DDX39A-202ENST00000324340 STK11Q15831 433 aa11.3□□□□□ -0.6
DDX39A-202ENST00000324340 THEM4Q5T1C6 240 aa11.3□□□□□ -0.6
DDX39A-202ENST00000324340 CNIH2Q6PI25 160 aa11.3□□□□□ -0.6
DDX39A-202ENST00000324340 KDF1Q8NAX2 398 aaPredicted RBP11.3□□□□□ -0.6
DDX39A-202ENST00000324340 NOXO1Q8NFA2 376 aa11.3□□□□□ -0.6
DDX39A-202ENST00000324340 OR51L1Q8NGJ5 315 aa11.3□□□□□ -0.6
DDX39A-202ENST00000324340 ROBO4Q8WZ75 1007 aa11.3□□□□□ -0.6
DDX39A-202ENST00000324340 ZMYND19Q96E35 227 aaPredicted RBP11.3□□□□□ -0.6
DDX39A-202ENST00000324340 WBP1Q96G27 269 aa11.3□□□□□ -0.6
DDX39A-202ENST00000324340 ZNF385AQ96PM9 386 aaKnown RBP11.3□□□□□ -0.6
DDX39A-202ENST00000324340 RBP7Q96R05 134 aa11.3□□□□□ -0.6
DDX39A-202ENST00000324340 EMC6Q9BV81 110 aa11.3□□□□□ -0.6
DDX39A-202ENST00000324340 REG4Q9BYZ8 158 aa11.3□□□□□ -0.6
DDX39A-202ENST00000324340 RNF122Q9H9V4 155 aa11.3□□□□□ -0.6
DDX39A-202ENST00000324340 SRA1Q9HD15 236 aaKnown RBP11.3□□□□□ -0.6
DDX39A-202ENST00000324340 TAS2R16Q9NYV7 291 aa11.3□□□□□ -0.6
DDX39A-202ENST00000324340 DUX4Q9UBX2 424 aa11.3□□□□□ -0.6
DDX39A-202ENST00000324340 MCTS1Q9ULC4 181 aaKnown RBP11.3□□□□□ -0.6
DDX39A-202ENST00000324340 RCE1Q9Y256 329 aa11.3□□□□□ -0.6
DDX39A-202ENST00000324340 FLVCR1Q9Y5Y0 555 aa11.3□□□□□ -0.6
DDX39A-202ENST00000324340 ASPMQ8IZT6 3477 aa11.3□□□□□ -0.6
DDX39A-202ENST00000324340 OR14I1A6ND48 311 aa11.29□□□□□ -0.6
DDX39A-202ENST00000324340 OR6C65A6NJZ3 312 aa11.29□□□□□ -0.6
DDX39A-202ENST00000324340 ZNF726A6NNF4 738 aa11.29□□□□□ -0.6
DDX39A-202ENST00000324340 SLC16A7O60669 478 aa11.29□□□□□ -0.6
DDX39A-202ENST00000324340 TSC22D2O75157 780 aa11.29□□□□□ -0.6
DDX39A-202ENST00000324340 WISP2O76076 250 aa11.29□□□□□ -0.6
DDX39A-202ENST00000324340 APOL3O95236 402 aa11.29□□□□□ -0.6
DDX39A-202ENST00000324340 SYNGR4O95473 234 aa11.29□□□□□ -0.6
DDX39A-202ENST00000324340 SULT1A3P0DMM9 295 aa11.29□□□□□ -0.6
DDX39A-202ENST00000324340 SULT1A4P0DMN0 295 aa11.29□□□□□ -0.6
DDX39A-202ENST00000324340 NR2C1P13056 603 aa11.29□□□□□ -0.6
DDX39A-202ENST00000324340 CTLA4P16410 223 aa11.29□□□□□ -0.6
DDX39A-202ENST00000324340 APEX1P27695 318 aaKnown RBP11.29□□□□□ -0.6
DDX39A-202ENST00000324340 PYCR1P32322 319 aa11.29□□□□□ -0.6
DDX39A-202ENST00000324340 ATP6V1E1P36543 226 aa11.29□□□□□ -0.6
DDX39A-202ENST00000324340 ZNF133P52736 654 aaPredicted RBP11.29□□□□□ -0.6
DDX39A-202ENST00000324340 ACTC1P68032 377 aa11.29□□□□□ -0.6
DDX39A-202ENST00000324340 ACTA1P68133 377 aa11.29□□□□□ -0.6
DDX39A-202ENST00000324340 DNM1P34Q6PK57 102 aa11.29□□□□□ -0.6
DDX39A-202ENST00000324340 SHFQ7M4L6 423 aa11.29□□□□□ -0.6
DDX39A-202ENST00000324340 ADGRE4PQ86SQ3 457 aa11.29□□□□□ -0.6
DDX39A-202ENST00000324340 TMEM123Q8N131 208 aa11.29□□□□□ -0.6
DDX39A-202ENST00000324340 ACBD7Q8N6N7 88 aa11.29□□□□□ -0.6
DDX39A-202ENST00000324340 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.29□□□□□ -0.6
DDX39A-202ENST00000324340 OR6K6Q8NGW6 343 aa11.29□□□□□ -0.6
DDX39A-202ENST00000324340 TMEM45BQ96B21 275 aa11.29□□□□□ -0.6
DDX39A-202ENST00000324340 SARAFQ96BY9 339 aa11.29□□□□□ -0.6
DDX39A-202ENST00000324340 CNN2Q99439 309 aaKnown RBP11.29□□□□□ -0.6
DDX39A-202ENST00000324340 OR51J1Q9H342 316 aa11.29□□□□□ -0.6
DDX39A-202ENST00000324340 DPAGT1Q9H3H5 408 aa11.29□□□□□ -0.6
DDX39A-202ENST00000324340 CLEC2DQ9UHP7 191 aa11.29□□□□□ -0.6
DDX39A-202ENST00000324340 ZFHX4Q86UP3 3567 aa11.29□□□□□ -0.6
DDX39A-202ENST00000324340 A0A0A6YYJ9 748 aa11.28□□□□□ -0.6
DDX39A-202ENST00000324340 AKAP8O43823 692 aaKnown RBP11.28□□□□□ -0.6
DDX39A-202ENST00000324340 PRAF2O60831 178 aa11.28□□□□□ -0.6
DDX39A-202ENST00000324340 KHDRBS3O75525 346 aaKnown RBP11.28□□□□□ -0.6
DDX39A-202ENST00000324340 PAHP00439 452 aa11.28□□□□□ -0.6
DDX39A-202ENST00000324340 TFP02787 698 aa11.28□□□□□ -0.6
DDX39A-202ENST00000324340 ACSM4P0C7M7 580 aa11.28□□□□□ -0.6
DDX39A-202ENST00000324340 OR2T7P0C7T2 308 aa11.28□□□□□ -0.6
DDX39A-202ENST00000324340 FAM87AP0C7U9 286 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms