RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 PROKR2Q8NFJ6 384 aa7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 BBS1Q8NFJ9 593 aa7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 SSX3Q99909 188 aa7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 ISG20L2Q9H9L3 353 aaKnown RBP7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 BCL2L10Q9HD36 194 aa7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 RPS10P5Q9NQ39 176 aa7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 ZGRF1Q86YA3 2104 aa7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 TRAV27A0A087WT01 109 aa7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 DAPL1A0PJW8 107 aa7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 OR14I1A6ND48 311 aa7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 OR6C76A6NM76 312 aa7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 ZNF879B4DU55 563 aa7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 SOX15O60248 233 aa7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 CREBL2O60519 120 aaPredicted RBP7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 RAB40ALP0C0E4 278 aa7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 HTR2AP28223 471 aa7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 RAB5BP61020 215 aa7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 AIMP2Q13155 320 aaKnown RBP7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 DYRK1AQ13627 763 aa7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 ETV3LQ6ZN32 361 aa7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 TMUB2Q71RG4 321 aa7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 GDF7Q7Z4P5 450 aa7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 CDK20Q8IZL9 346 aa7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 PXT1Q8NFP0 134 aa7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 STK35Q8TDR2 534 aa7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 ELP5Q8TE02 316 aa7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 DVL3Q92997 716 aaPredicted RBP7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 YIPF5Q969M3 257 aa7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 SHARPINQ9H0F6 387 aa7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 DEFB127Q9H1M4 99 aa7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 NOX3Q9HBY0 568 aa7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 EMC7Q9NPA0 242 aa7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 NDUFB11Q9NX14 153 aa7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 TAS2R10Q9NYW0 307 aa7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 SH3BGRL2Q9UJC5 107 aa7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 CACNA1AO00555 2505 aa7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 COL5A1P20908 1838 aaPredicted RBP7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 A0A1W2PNR3 127 aa7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 RPP14O95059 124 aaKnown RBP7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 WISP1O95388 367 aa7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 CD2P06729 351 aa7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 SLC6A1P30531 599 aa7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 PRKAR1BP31321 381 aa7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 PNLIPRP2P54317 469 aa7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 C1QL3Q5VWW1 255 aa7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 KCTD9Q7L273 389 aa7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 ZNF550Q7Z398 422 aa7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 DPPA2Q7Z7J5 298 aa7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 DTX1Q86Y01 620 aa7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 NANOGP1Q8N7R0 232 aa7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 GPR119Q8TDV5 335 aa7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 C5orf34Q96MH7 638 aa7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 OR2M2Q96R28 347 aa7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 PITX2Q99697 317 aa7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 MMP25Q9NPA2 562 aa7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 DNAJB12Q9NXW2 375 aaKnown RBP7.8□□□□□ -1.16
LIMCH1-209ENST00000509277 ZNF891A8MT65 544 aaPredicted RBP7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 DNASE2O00115 360 aaPredicted RBP7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 BET1O15155 118 aa7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 TSPAN2O60636 221 aa7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 HTR3BO95264 441 aa7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 RRADP55042 308 aa7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 EEF1A1P68104 462 aaKnown RBP7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 HLXQ14774 488 aaPredicted RBP7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 TRAM2Q15035 370 aa7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 AVPI1Q5T686 147 aa7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 SPACA3Q8IXA5 215 aa7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 CLDN22Q8N7P3 220 aa7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 OR1J4Q8NGS1 313 aa7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 NUBPLQ8TB37 319 aa7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 M1APQ8TC57 530 aa7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 EPYCQ99645 322 aa7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 CDCA4Q9BXL8 241 aa7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 SPRY4Q9C004 299 aa7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 ACER3Q9NUN7 267 aa7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 SLCO1C1Q9NYB5 712 aa7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 COMMD9Q9P000 198 aa7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 KANTRA0A1W2PQU2 76 aa7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 TRAPPC13A5PLN9 417 aa7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 TMEM229AB2RXF0 380 aa7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 MPZL2O60487 215 aa7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 HK1P19367 917 aa7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 NAA10P41227 235 aaPredicted RBP7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 HCCSP53701 268 aa7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 PRICKLE2Q7Z3G6 844 aa7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 TMEM17Q86X19 198 aa7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 PUSL1Q8N0Z8 303 aaKnown RBP7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 KLHL36Q8N4N3 616 aa7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 TMEM163Q8TC26 289 aa7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 ST7LQ8TDW4 575 aa7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 ACOT11Q8WXI4 607 aaPredicted RBP7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 PRRC1Q96M27 445 aa7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 PPP1R3EQ9H7J1 279 aa7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 PTGES2Q9H7Z7 377 aa7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 ZMAT3Q9HA38 289 aaKnown RBP7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 A4GNTQ9UNA3 340 aa7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 NUBP2Q9Y5Y2 271 aa7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 SPTBN1Q01082 2364 aaKnown RBP7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 A0A087WUU8 490 aa7.79□□□□□ -1.16
LIMCH1-209ENST00000509277 LOC102723996A0A087X1L8 192 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 326.1 ms