RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 RCE1Q9Y256 329 aa11.51□□□□□ -0.57
SPTLC1-201ENST00000262554 RBMX2Q9Y388 322 aaKnown RBP11.51□□□□□ -0.57
SPTLC1-201ENST00000262554 A0A0A6YYJ9 748 aa11.5□□□□□ -0.57
SPTLC1-201ENST00000262554 LOC100289279A0A1B0GTE1 492 aa11.5□□□□□ -0.57
SPTLC1-201ENST00000262554 OR2M5A3KFT3 312 aa11.5□□□□□ -0.57
SPTLC1-201ENST00000262554 MASP2O00187 686 aa11.5□□□□□ -0.57
SPTLC1-201ENST00000262554 ZIC3O60481 467 aa11.5□□□□□ -0.57
SPTLC1-201ENST00000262554 EIF1BO60739 113 aaKnown RBP11.5□□□□□ -0.57
SPTLC1-201ENST00000262554 RAMP1O60894 148 aa11.5□□□□□ -0.57
SPTLC1-201ENST00000262554 P04436 131 aa11.5□□□□□ -0.57
SPTLC1-201ENST00000262554 YES1P07947 543 aa11.5□□□□□ -0.57
SPTLC1-201ENST00000262554 CCR6P51684 374 aa11.5□□□□□ -0.57
SPTLC1-201ENST00000262554 RAG2P55895 527 aa11.5□□□□□ -0.57
SPTLC1-201ENST00000262554 CLDN17P56750 224 aa11.5□□□□□ -0.57
SPTLC1-201ENST00000262554 RPS15P62841 145 aaKnown RBP11.5□□□□□ -0.57
SPTLC1-201ENST00000262554 CSNK2A1P68400 391 aaPredicted RBP11.5□□□□□ -0.57
SPTLC1-201ENST00000262554 HIST3H3Q16695 136 aa11.5□□□□□ -0.57
SPTLC1-201ENST00000262554 C2orf76Q3KRA6 126 aa11.5□□□□□ -0.57
SPTLC1-201ENST00000262554 LCE2DQ5TA82 110 aaPredicted RBP11.5□□□□□ -0.57
SPTLC1-201ENST00000262554 ASPHD2Q6ICH7 369 aa11.5□□□□□ -0.57
SPTLC1-201ENST00000262554 ANKRD16Q6P6B7 361 aa11.5□□□□□ -0.57
SPTLC1-201ENST00000262554 UTS2BQ765I0 119 aa11.5□□□□□ -0.57
SPTLC1-201ENST00000262554 BTN2A1Q7KYR7 527 aa11.5□□□□□ -0.57
SPTLC1-201ENST00000262554 PLPP7Q8NBV4 271 aa11.5□□□□□ -0.57
SPTLC1-201ENST00000262554 PHF21AQ96BD5 680 aa11.5□□□□□ -0.57
SPTLC1-201ENST00000262554 NAA11Q9BSU3 229 aaPredicted RBP11.5□□□□□ -0.57
SPTLC1-201ENST00000262554 ACTR6Q9GZN1 396 aa11.5□□□□□ -0.57
SPTLC1-201ENST00000262554 EMC7Q9NPA0 242 aa11.5□□□□□ -0.57
SPTLC1-201ENST00000262554 SLC17A5Q9NRA2 495 aa11.5□□□□□ -0.57
SPTLC1-201ENST00000262554 FAM206AQ9NX38 181 aa11.5□□□□□ -0.57
SPTLC1-201ENST00000262554 GDF2Q9UK05 429 aaPredicted RBP11.5□□□□□ -0.57
SPTLC1-201ENST00000262554 FARSAQ9Y285 508 aaKnown RBP11.5□□□□□ -0.57
SPTLC1-201ENST00000262554 LHFPL6Q9Y693 200 aa11.5□□□□□ -0.57
SPTLC1-201ENST00000262554 GJE1A6NN92 205 aa11.49□□□□□ -0.57
SPTLC1-201ENST00000262554 ZNF878C9JN71 531 aa11.49□□□□□ -0.57
SPTLC1-201ENST00000262554 P2RY10O00398 339 aa11.49□□□□□ -0.57
SPTLC1-201ENST00000262554 CTAG2O75638 210 aa11.49□□□□□ -0.57
SPTLC1-201ENST00000262554 QDPRP09417 244 aa11.49□□□□□ -0.57
SPTLC1-201ENST00000262554 H2AFB2P0C5Z0 115 aa11.49□□□□□ -0.57
SPTLC1-201ENST00000262554 TMIGD3P0DMS9 266 aaPredicted RBP11.49□□□□□ -0.57
SPTLC1-201ENST00000262554 H3F3AP84243 136 aa11.49□□□□□ -0.57
SPTLC1-201ENST00000262554 TUSC1Q2TAM9 212 aa11.49□□□□□ -0.57
SPTLC1-201ENST00000262554 FAM166AQ6J272 317 aa11.49□□□□□ -0.57
SPTLC1-201ENST00000262554 RHOUQ7L0Q8 258 aa11.49□□□□□ -0.57
SPTLC1-201ENST00000262554 TIPARPQ7Z3E1 657 aaKnown RBP11.49□□□□□ -0.57
SPTLC1-201ENST00000262554 SCMH1Q96GD3 660 aa11.49□□□□□ -0.57
SPTLC1-201ENST00000262554 PIGQQ9BRB3 760 aa11.49□□□□□ -0.57
SPTLC1-201ENST00000262554 MED28Q9H204 178 aa11.49□□□□□ -0.57
SPTLC1-201ENST00000262554 TP63Q9H3D4 680 aaPredicted RBP11.49□□□□□ -0.57
SPTLC1-201ENST00000262554 HRASLSQ9HDD0 168 aa11.49□□□□□ -0.57
SPTLC1-201ENST00000262554 MRPL15Q9P015 296 aaKnown RBP11.49□□□□□ -0.57
SPTLC1-201ENST00000262554 KLK11Q9UBX7 282 aa11.49□□□□□ -0.57
SPTLC1-201ENST00000262554 ITGB1BP2Q9UKP3 347 aa11.49□□□□□ -0.57
SPTLC1-201ENST00000262554 PHF3Q92576 2039 aaKnown RBP11.49□□□□□ -0.57
SPTLC1-201ENST00000262554 KIAA1549Q9HCM3 1950 aa11.49□□□□□ -0.57
SPTLC1-201ENST00000262554 ANKRD20A5PA0PJZ0 165 aa11.49□□□□□ -0.57
SPTLC1-201ENST00000262554 C7orf66A4D0T2 115 aa11.49□□□□□ -0.57
SPTLC1-201ENST00000262554 GGT3PA6NGU5 568 aa11.49□□□□□ -0.57
SPTLC1-201ENST00000262554 DOK2O60496 412 aa11.49□□□□□ -0.57
SPTLC1-201ENST00000262554 VAMP5O95183 116 aa11.49□□□□□ -0.57
SPTLC1-201ENST00000262554 KLK2P20151 261 aa11.49□□□□□ -0.57
SPTLC1-201ENST00000262554 HTR2CP28335 458 aa11.49□□□□□ -0.57
SPTLC1-201ENST00000262554 HSD11B1P28845 292 aa11.49□□□□□ -0.57
SPTLC1-201ENST00000262554 CDAP32320 146 aa11.49□□□□□ -0.57
SPTLC1-201ENST00000262554 GABREP78334 506 aa11.49□□□□□ -0.57
SPTLC1-201ENST00000262554 Q0VFX4 171 aa11.49□□□□□ -0.57
SPTLC1-201ENST00000262554 PLA2G7Q13093 441 aa11.49□□□□□ -0.57
SPTLC1-201ENST00000262554 MAB21L1Q13394 359 aa11.49□□□□□ -0.57
SPTLC1-201ENST00000262554 TOMM20Q15388 145 aa11.49□□□□□ -0.57
SPTLC1-201ENST00000262554 TAF13Q15543 124 aa11.49□□□□□ -0.57
SPTLC1-201ENST00000262554 KCNMB1Q16558 191 aa11.49□□□□□ -0.57
SPTLC1-201ENST00000262554 ZNF468Q5VIY5 522 aaPredicted RBP11.49□□□□□ -0.57
SPTLC1-201ENST00000262554 CFAP77Q6ZQR2 320 aa11.49□□□□□ -0.57
SPTLC1-201ENST00000262554 LUZP2Q86TE4 346 aa11.49□□□□□ -0.57
SPTLC1-201ENST00000262554 ELMOD2Q8IZ81 293 aa11.49□□□□□ -0.57
SPTLC1-201ENST00000262554 NKAIN3Q8N8D7 197 aa11.49□□□□□ -0.57
SPTLC1-201ENST00000262554 OR10S1Q8NGN2 331 aa11.49□□□□□ -0.57
SPTLC1-201ENST00000262554 RNF170Q96K19 258 aa11.49□□□□□ -0.57
SPTLC1-201ENST00000262554 PBOV1Q9GZY1 135 aa11.49□□□□□ -0.57
SPTLC1-201ENST00000262554 NIPAL2Q9H841 368 aa11.49□□□□□ -0.57
SPTLC1-201ENST00000262554 PMS2P1A4D2B8 440 aa11.48□□□□□ -0.57
SPTLC1-201ENST00000262554 NPIPA2E9PIF3 369 aa11.48□□□□□ -0.57
SPTLC1-201ENST00000262554 NPIPA3F8WFD2 350 aa11.48□□□□□ -0.57
SPTLC1-201ENST00000262554 TTRP02766 147 aa11.48□□□□□ -0.57
SPTLC1-201ENST00000262554 ACSM4P0C7M7 580 aa11.48□□□□□ -0.57
SPTLC1-201ENST00000262554 CD37P11049 281 aa11.48□□□□□ -0.57
SPTLC1-201ENST00000262554 STOMP27105 288 aa11.48□□□□□ -0.57
SPTLC1-201ENST00000262554 GUCA1AP43080 201 aaPredicted RBP11.48□□□□□ -0.57
SPTLC1-201ENST00000262554 EFNB2P52799 333 aa11.48□□□□□ -0.57
SPTLC1-201ENST00000262554 RAC1P63000 192 aa11.48□□□□□ -0.57
SPTLC1-201ENST00000262554 MFAP5Q13361 173 aa11.48□□□□□ -0.57
SPTLC1-201ENST00000262554 PLA2G2CQ5R387 149 aa11.48□□□□□ -0.57
SPTLC1-201ENST00000262554 GLYATL3Q5SZD4 288 aa11.48□□□□□ -0.57
SPTLC1-201ENST00000262554 H3F3CQ6NXT2 135 aa11.48□□□□□ -0.57
SPTLC1-201ENST00000262554 CDH24Q86UP0 819 aa11.48□□□□□ -0.57
SPTLC1-201ENST00000262554 NAXDQ8IW45 347 aa11.48□□□□□ -0.57
SPTLC1-201ENST00000262554 OR6M1Q8NGM8 313 aa11.48□□□□□ -0.57
SPTLC1-201ENST00000262554 OR56B4Q8NH76 319 aa11.48□□□□□ -0.57
SPTLC1-201ENST00000262554 LIN37Q96GY3 246 aaPredicted RBP11.48□□□□□ -0.57
SPTLC1-201ENST00000262554 FAM210AQ96ND0 272 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms