RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 DUS4LO95620 317 aaKnown RBP4.82□□□□□ -1.64
SYNE1-220ENST00000471834 HRGP04196 525 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 SEC11BP0C7V7 166 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 ZNF41P51814 821 aaPredicted RBP4.82□□□□□ -1.64
SYNE1-220ENST00000471834 ADAM8P78325 824 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 INPP5JQ15735 1006 aaPredicted RBP4.82□□□□□ -1.64
SYNE1-220ENST00000471834 GLT8D1Q68CQ7 371 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 H3F3CQ6NXT2 135 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 OR13D1Q8NGV5 346 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 FGF13Q92913 245 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 TMEM230Q96A57 120 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 C3orf49Q96BT1 292 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 C8orf44Q96CB5 159 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 FAM46AQ96IP4 442 aaKnown RBP4.82□□□□□ -1.64
SYNE1-220ENST00000471834 TBL1XR1Q9BZK7 514 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 DNAJB12Q9NXW2 375 aaKnown RBP4.82□□□□□ -1.64
SYNE1-220ENST00000471834 FIGNL2A6NMB9 653 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 RP2O75695 350 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 SYNGR4O95473 234 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 IFNA2P01563 188 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 SPARCP09486 303 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 SNRPBP14678 240 aaKnown RBP4.82□□□□□ -1.64
SYNE1-220ENST00000471834 PLP2Q04941 152 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 PRSS54Q6PEW0 395 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 Q6ZS49 121 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 SLC16A14Q7RTX9 510 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 CEACAM19Q7Z692 300 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 JAGN1Q8N5M9 183 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 MFSD9Q8NBP5 474 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 OR1S2Q8NGQ3 325 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 ZNRF4Q8WWF5 429 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 FCAMRQ8WWV6 532 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 KCNK6Q9Y257 313 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 INSL5Q9Y5Q6 135 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 PIAS3Q9Y6X2 628 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 V9GY05 133 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 MEGF11A6BM72 1044 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 GOSR2O14653 212 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 BRINP1O60477 761 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 GLCEO94923 617 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 NDUFB2O95178 105 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 BDKRB2P30411 391 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 SRYQ05066 204 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 KCNMB1Q16558 191 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 EIF2S3LQ2VIR3 472 aaKnown RBP4.82□□□□□ -1.64
SYNE1-220ENST00000471834 SFRP5Q5T4F7 317 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 RNASEH2CQ8TDP1 164 aaKnown RBP4.82□□□□□ -1.64
SYNE1-220ENST00000471834 ABHD14BQ96IU4 210 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 SLC41A2Q96JW4 573 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 NMES1Q9C002 83 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 EDDM13A0A1B0GTR0 161 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 LIPT2A6NK58 231 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 TAAR5O14804 337 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 CBX7O95931 251 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 CYB5AP00167 134 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 TACSTD2P09758 323 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 EGR3Q06889 387 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 DHRS2Q13268 280 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 C1orf189Q5VU69 101 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 FIGNL1Q6PIW4 674 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 ASCL4Q6XD76 172 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 LRRTM4Q86VH4 590 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 SLC22A11Q9NSA0 550 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 OR6C2Q9NZP2 312 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 KLK11Q9UBX7 282 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 OSGIN2Q9Y236 505 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 AMDHD2Q9Y303 409 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 NOP16Q9Y3C1 178 aaKnown RBP4.82□□□□□ -1.64
SYNE1-220ENST00000471834 MMP24Q9Y5R2 645 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 H7C2Y5 167 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 GPR31O00270 319 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 LCMT2O60294 686 aaKnown RBP4.82□□□□□ -1.64
SYNE1-220ENST00000471834 SRMP19623 302 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 PYCR1P32322 319 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 HAAOP46952 286 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 GABRA4P48169 554 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 LUMP51884 338 aaPredicted RBP4.82□□□□□ -1.64
SYNE1-220ENST00000471834 SLC26A5P58743 744 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 FUT7Q11130 342 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 TMEM176BQ3YBM2 270 aaPredicted RBP4.82□□□□□ -1.64
SYNE1-220ENST00000471834 SLC16A9Q7RTY1 509 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 CCDC116Q8IYX3 515 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 ZNF676Q8N7Q3 588 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 ZSCAN4Q8NAM6 433 aaPredicted RBP4.82□□□□□ -1.64
SYNE1-220ENST00000471834 DTWD2Q8NBA8 298 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 SLC16A11Q8NCK7 471 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 OR10K1Q8NGX5 313 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 ZDHHC16Q969W1 377 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 OR8B4Q96RC9 309 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 HDAC8Q9BY41 377 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 SLC5A7Q9GZV3 580 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 ADAP2Q9NPF8 381 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 RYDENQ9NUL5 291 aaKnown RBP4.82□□□□□ -1.64
SYNE1-220ENST00000471834 OBP2AQ9NY56 170 aa4.82□□□□□ -1.64
SYNE1-220ENST00000471834 IGLV1-36A0A0B4J1U3 117 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 OR6C74A6NCV1 312 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 HOXB5P09067 269 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 IRF2P14316 349 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 FOSL1P15407 271 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 HOXA5P20719 270 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 103.6 ms