RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 FAM122BQ7Z309 247 aa14.06□□□□□ -0.16
CCDC28B-204ENST00000469003 TSEN54Q7Z6J9 526 aaKnown RBP14.06□□□□□ -0.16
CCDC28B-204ENST00000469003 ZER1Q7Z7L7 766 aa14.06□□□□□ -0.16
CCDC28B-204ENST00000469003 TREML1Q86YW5 311 aa14.06□□□□□ -0.16
CCDC28B-204ENST00000469003 SLC7A13Q8TCU3 470 aa14.06□□□□□ -0.16
CCDC28B-204ENST00000469003 CCL17Q92583 94 aa14.06□□□□□ -0.16
CCDC28B-204ENST00000469003 FAM162AQ96A26 154 aa14.06□□□□□ -0.16
CCDC28B-204ENST00000469003 ZNF570Q96NI8 536 aa14.06□□□□□ -0.16
CCDC28B-204ENST00000469003 KCTD14Q9BQ13 255 aaPredicted RBP14.06□□□□□ -0.16
CCDC28B-204ENST00000469003 EMC7Q9NPA0 242 aa14.06□□□□□ -0.16
CCDC28B-204ENST00000469003 TEX13CA0A0J9YWL9 993 aa14.05□□□□□ -0.16
CCDC28B-204ENST00000469003 PRSS37A4D1T9 235 aa14.05□□□□□ -0.16
CCDC28B-204ENST00000469003 DOK2O60496 412 aa14.05□□□□□ -0.16
CCDC28B-204ENST00000469003 VENTXO95231 258 aa14.05□□□□□ -0.16
CCDC28B-204ENST00000469003 ABHD16AO95870 558 aa14.05□□□□□ -0.16
CCDC28B-204ENST00000469003 CD55P08174 381 aa14.05□□□□□ -0.16
CCDC28B-204ENST00000469003 TUBG1P23258 451 aa14.05□□□□□ -0.16
CCDC28B-204ENST00000469003 NUDT2P50583 147 aa14.05□□□□□ -0.16
CCDC28B-204ENST00000469003 MTX3Q5HYI7 312 aa14.05□□□□□ -0.16
CCDC28B-204ENST00000469003 C1orf229Q6ZS94 237 aaPredicted RBP14.05□□□□□ -0.16
CCDC28B-204ENST00000469003 NPEPL1Q8NDH3 523 aa14.05□□□□□ -0.16
CCDC28B-204ENST00000469003 SEMA6DQ8NFY4 1073 aa14.05□□□□□ -0.16
CCDC28B-204ENST00000469003 ZFAND2BQ8WV99 257 aa14.05□□□□□ -0.16
CCDC28B-204ENST00000469003 TUBG2Q9NRH3 451 aa14.05□□□□□ -0.16
CCDC28B-204ENST00000469003 TBCCD1Q9NVR7 557 aa14.05□□□□□ -0.16
CCDC28B-204ENST00000469003 ABCD2Q9UBJ2 740 aa14.05□□□□□ -0.16
CCDC28B-204ENST00000469003 RPS6KA6Q9UK32 745 aa14.05□□□□□ -0.16
CCDC28B-204ENST00000469003 A0A0G2JMP0 313 aa14.04□□□□□ -0.16
CCDC28B-204ENST00000469003 A0A0X1KG70 313 aa14.04□□□□□ -0.16
CCDC28B-204ENST00000469003 A0A1W2PRQ8 180 aa14.04□□□□□ -0.16
CCDC28B-204ENST00000469003 J3QLI3 93 aa14.04□□□□□ -0.16
CCDC28B-204ENST00000469003 WIPF1O43516 503 aa14.04□□□□□ -0.16
CCDC28B-204ENST00000469003 SGCEO43556 437 aa14.04□□□□□ -0.16
CCDC28B-204ENST00000469003 TIMM8AO60220 97 aaPredicted RBP14.04□□□□□ -0.16
CCDC28B-204ENST00000469003 PTP4A3O75365 173 aa14.04□□□□□ -0.16
CCDC28B-204ENST00000469003 NDUFB2O95178 105 aa14.04□□□□□ -0.16
CCDC28B-204ENST00000469003 AVPP01185 164 aa14.04□□□□□ -0.16
CCDC28B-204ENST00000469003 H1F0P07305 194 aaKnown RBP14.04□□□□□ -0.16
CCDC28B-204ENST00000469003 NCK1P16333 377 aa14.04□□□□□ -0.16
CCDC28B-204ENST00000469003 CTLA4P16410 223 aa14.04□□□□□ -0.16
CCDC28B-204ENST00000469003 GSTM3P21266 225 aa14.04□□□□□ -0.16
CCDC28B-204ENST00000469003 SDHAP31040 664 aa14.04□□□□□ -0.16
CCDC28B-204ENST00000469003 HTR5AP47898 357 aa14.04□□□□□ -0.16
CCDC28B-204ENST00000469003 LIMS1P48059 325 aa14.04□□□□□ -0.16
CCDC28B-204ENST00000469003 PSG7Q13046 419 aa14.04□□□□□ -0.16
CCDC28B-204ENST00000469003 KRR1Q13601 381 aaKnown RBP14.04□□□□□ -0.16
CCDC28B-204ENST00000469003 DGCR6Q14129 220 aa14.04□□□□□ -0.16
CCDC28B-204ENST00000469003 GPR139Q6DWJ6 353 aa14.04□□□□□ -0.16
CCDC28B-204ENST00000469003 THSD4Q6ZMP0 1018 aa14.04□□□□□ -0.16
CCDC28B-204ENST00000469003 PEG10Q86TG7 708 aaKnown RBP14.04□□□□□ -0.16
CCDC28B-204ENST00000469003 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP14.04□□□□□ -0.16
CCDC28B-204ENST00000469003 OR4M2Q8NGB6 313 aa14.04□□□□□ -0.16
CCDC28B-204ENST00000469003 ZNF418Q8TF45 676 aaPredicted RBP14.04□□□□□ -0.16
CCDC28B-204ENST00000469003 FAM46AQ96IP4 442 aaKnown RBP14.04□□□□□ -0.16
CCDC28B-204ENST00000469003 GPX7Q96SL4 187 aaPredicted RBP14.04□□□□□ -0.16
CCDC28B-204ENST00000469003 GAL3ST1Q99999 423 aa14.04□□□□□ -0.16
CCDC28B-204ENST00000469003 MSL2Q9HCI7 577 aa14.04□□□□□ -0.16
CCDC28B-204ENST00000469003 SIGLEC7Q9Y286 467 aa14.04□□□□□ -0.16
CCDC28B-204ENST00000469003 FAM32AQ9Y421 112 aaKnown RBP14.04□□□□□ -0.16
CCDC28B-204ENST00000469003 KHDRBS3O75525 346 aaKnown RBP14.03□□□□□ -0.16
CCDC28B-204ENST00000469003 RHCEP18577 417 aa14.03□□□□□ -0.16
CCDC28B-204ENST00000469003 EPHA1P21709 976 aa14.03□□□□□ -0.16
CCDC28B-204ENST00000469003 OMPP47874 163 aa14.03□□□□□ -0.16
CCDC28B-204ENST00000469003 PSME3P61289 254 aa14.03□□□□□ -0.16
CCDC28B-204ENST00000469003 TNFAIP6P98066 277 aaPredicted RBP14.03□□□□□ -0.16
CCDC28B-204ENST00000469003 CDK5R2Q13319 367 aa14.03□□□□□ -0.16
CCDC28B-204ENST00000469003 AQP6Q13520 282 aa14.03□□□□□ -0.16
CCDC28B-204ENST00000469003 SPRNQ5BIV9 151 aa14.03□□□□□ -0.16
CCDC28B-204ENST00000469003 VASH1Q7L8A9 365 aaPredicted RBP14.03□□□□□ -0.16
CCDC28B-204ENST00000469003 RASD2Q96D21 266 aa14.03□□□□□ -0.16
CCDC28B-204ENST00000469003 TMPRSS13Q9BYE2 586 aa14.03□□□□□ -0.16
CCDC28B-204ENST00000469003 SYT4Q9H2B2 425 aa14.03□□□□□ -0.16
CCDC28B-204ENST00000469003 POFUT1Q9H488 388 aa14.03□□□□□ -0.16
CCDC28B-204ENST00000469003 MED4Q9NPJ6 270 aa14.03□□□□□ -0.16
CCDC28B-204ENST00000469003 NRIP3Q9NQ35 241 aa14.03□□□□□ -0.16
CCDC28B-204ENST00000469003 PLEK2Q9NYT0 353 aa14.03□□□□□ -0.16
CCDC28B-204ENST00000469003 VSX1Q9NZR4 365 aaPredicted RBP14.03□□□□□ -0.16
CCDC28B-204ENST00000469003 NDUFAF4Q9P032 175 aa14.03□□□□□ -0.16
CCDC28B-204ENST00000469003 PURGQ9UJV8 347 aaKnown RBP14.03□□□□□ -0.16
CCDC28B-204ENST00000469003 LOC105371242A0A075B767 164 aa14.02□□□□□ -0.17
CCDC28B-204ENST00000469003 ISPDA4D126 451 aa14.02□□□□□ -0.17
CCDC28B-204ENST00000469003 SLC16A7O60669 478 aa14.02□□□□□ -0.17
CCDC28B-204ENST00000469003 KITLGP21583 273 aa14.02□□□□□ -0.17
CCDC28B-204ENST00000469003 GATA3P23771 443 aa14.02□□□□□ -0.17
CCDC28B-204ENST00000469003 LSM6P62312 80 aaKnown RBP14.02□□□□□ -0.17
CCDC28B-204ENST00000469003 FGD3Q5JSP0 725 aa14.02□□□□□ -0.17
CCDC28B-204ENST00000469003 DCAF12L2Q5VW00 463 aa14.02□□□□□ -0.17
CCDC28B-204ENST00000469003 GLYATQ6IB77 296 aa14.02□□□□□ -0.17
CCDC28B-204ENST00000469003 C1QL2Q7Z5L3 287 aa14.02□□□□□ -0.17
CCDC28B-204ENST00000469003 ADCK1Q86TW2 530 aa14.02□□□□□ -0.17
CCDC28B-204ENST00000469003 GLB1L2Q8IW92 636 aa14.02□□□□□ -0.17
CCDC28B-204ENST00000469003 CMTM5Q96DZ9 223 aa14.02□□□□□ -0.17
CCDC28B-204ENST00000469003 RSRC1Q96IZ7 334 aaKnown RBP14.02□□□□□ -0.17
CCDC28B-204ENST00000469003 C7orf34Q96L11 122 aa14.02□□□□□ -0.17
CCDC28B-204ENST00000469003 COG8Q96MW5 612 aa14.02□□□□□ -0.17
CCDC28B-204ENST00000469003 MYLK2Q9H1R3 596 aa14.02□□□□□ -0.17
CCDC28B-204ENST00000469003 EGFL7Q9UHF1 273 aa14.02□□□□□ -0.17
CCDC28B-204ENST00000469003 COA3Q9Y2R0 106 aaPredicted RBP14.02□□□□□ -0.17
CCDC28B-204ENST00000469003 NPTNQ9Y639 398 aa14.02□□□□□ -0.17
CCDC28B-204ENST00000469003 OR6C6A6NF89 314 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms