RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 USP43Q70EL4 1123 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 LRRC17Q8N6Y2 441 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 OR51T1Q8NGJ9 327 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 OR2AE1Q8NHA4 323 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 LILRB1Q8NHL6 650 aaPredicted RBP3.7□□□□□ -1.82
USH2A-202ENST00000366942 NUBPLQ8TB37 319 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 MOB1AQ9H8S9 216 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 ZNF69Q9UC07 566 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 CCL26Q9Y258 94 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 HRH3Q9Y5N1 445 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 CHD8Q9HCK8 2581 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 SPHKAPQ2M3C7 1700 aa3.7□□□□□ -1.82
USH2A-202ENST00000366942 H7BYZ3 331 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 TULP2O00295 520 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 DHHO43323 396 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 CBFA2T3O75081 653 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 ENTPD6O75354 484 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 IL18BPO95998 194 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 TAS2R40P59535 323 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 TAS2R45P59539 299 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 ZSCAN26Q16670 478 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 FAM174BQ3ZCQ3 159 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 FBXO48Q5FWF7 155 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 FFAR4Q5NUL3 377 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 NPNTQ6UXI9 565 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 LGI3Q8N145 548 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 SDR9C7Q8NEX9 313 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 OR5H2Q8NGV7 314 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 OR51A7Q8NH64 312 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 ZFAND1Q8TCF1 268 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 OR2A5Q96R48 311 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 CHRDL1Q9BU40 450 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 POFUT1Q9H488 388 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 PLAC1Q9HBJ0 212 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 DTLQ9NZJ0 730 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 RAB22AQ9UL26 194 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 C15orf41Q9Y2V0 281 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 INSIG2Q9Y5U4 225 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 PTPRQQ9UMZ3 2332 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 IGHV5-10-1A0A0J9YXX1 117 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 C5orf49A4QMS7 147 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 FAM183AA6NL82 134 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 IQCJ-SCHIP1C9J366 451 aaPredicted RBP3.69□□□□□ -1.82
USH2A-202ENST00000366942 SULT1C2O00338 296 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 CYR61O00622 381 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 SLC16A6O15403 523 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 HLA-DPB1P04440 258 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 SELLP14151 372 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 SNRPD3P62318 126 aaKnown RBP3.69□□□□□ -1.82
USH2A-202ENST00000366942 PUDPQ08623 228 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 PRAMEF5Q5TYX0 476 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 AADACL3Q5VUY0 350 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 C1orf140Q5VVS0 124 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 PRAMEF9Q5VWM5 478 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 PRAMEF6Q5VXH4 476 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 METRNLQ641Q3 311 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 MS4A15Q8N5U1 240 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 OR4K13Q8NH42 304 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 OR56B4Q8NH76 319 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 DYNC2LI1Q8TCX1 351 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 LRRC15Q8TF66 581 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 RNF141Q8WVD5 230 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 AKAP6Q13023 2319 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 ARPC4-TTLL3A0A0A6YYG9 625 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 KRBA1A5PL33 1030 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 TISP43B9A030 160 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 NPIPB6E9PJ23 425 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 GDF9O60383 454 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 S100A8P05109 93 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 PIPP12273 146 aaPredicted RBP3.69□□□□□ -1.82
USH2A-202ENST00000366942 PROZP22891 400 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 MDH2P40926 338 aaKnown RBP3.69□□□□□ -1.82
USH2A-202ENST00000366942 TAS2R19P59542 299 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 MFGE8Q08431 387 aaPredicted RBP3.69□□□□□ -1.82
USH2A-202ENST00000366942 TCF15Q12870 199 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 SKP2Q13309 424 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 EARS2Q5JPH6 523 aaKnown RBP3.69□□□□□ -1.82
USH2A-202ENST00000366942 ZNF626Q68DY1 528 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 MOB1BQ7L9L4 216 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 SVOPLQ8N434 492 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 INO80EQ8NBZ0 244 aaPredicted RBP3.69□□□□□ -1.82
USH2A-202ENST00000366942 SLC30A7Q8NEW0 376 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 SLC25A44Q96H78 314 aaPredicted RBP3.69□□□□□ -1.82
USH2A-202ENST00000366942 ATP6V1G3Q96LB4 118 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 PBDC1Q9BVG4 233 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 SEMA6AQ9H2E6 1030 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 NDUFA13Q9P0J0 144 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 SPG11Q96JI7 2443 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 SRRM3A6NNA2 597 aaPredicted RBP3.69□□□□□ -1.82
USH2A-202ENST00000366942 EDIL3O43854 480 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 HTN3P15516 51 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 HTR2CP28335 458 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 GNG3P63215 75 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 MEF2CQ06413 473 aaPredicted RBP3.69□□□□□ -1.82
USH2A-202ENST00000366942 TMEM30BQ3MIR4 351 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 ZBTB37Q5TC79 503 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 GGNBP1Q5YKI7 109 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 STUMQ69YW2 141 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 AMMECR1LQ6DCA0 310 aa3.69□□□□□ -1.82
USH2A-202ENST00000366942 C19orf35Q6ZS72 473 aa3.69□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms