RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 LPCAT3Q6P1A2 487 aa14.2□□□□□ -0.14
PTPRF-201ENST00000359947 NLRC3Q7RTR2 1065 aa14.2□□□□□ -0.14
PTPRF-201ENST00000359947 FBXL14Q8N1E6 418 aa14.2□□□□□ -0.14
PTPRF-201ENST00000359947 ACOXLQ9NUZ1 547 aa14.2□□□□□ -0.14
PTPRF-201ENST00000359947 CLEC2DQ9UHP7 191 aa14.2□□□□□ -0.14
PTPRF-201ENST00000359947 ARPC4-TTLL3A0A0A6YYG9 625 aa14.2□□□□□ -0.14
PTPRF-201ENST00000359947 FADS1O60427 444 aa14.2□□□□□ -0.14
PTPRF-201ENST00000359947 GDNFP39905 211 aa14.2□□□□□ -0.14
PTPRF-201ENST00000359947 PNPLA5Q7Z6Z6 429 aaPredicted RBP14.2□□□□□ -0.14
PTPRF-201ENST00000359947 ZFP82Q8N141 532 aa14.2□□□□□ -0.14
PTPRF-201ENST00000359947 CACNA1CQ13936 2221 aa14.2□□□□□ -0.14
PTPRF-201ENST00000359947 CDC14BO60729 498 aa14.2□□□□□ -0.14
PTPRF-201ENST00000359947 IGFBP1P08833 259 aaPredicted RBP14.2□□□□□ -0.14
PTPRF-201ENST00000359947 MMP11P24347 488 aa14.2□□□□□ -0.14
PTPRF-201ENST00000359947 KCNJ8Q15842 424 aa14.2□□□□□ -0.14
PTPRF-201ENST00000359947 OR56B4Q8NH76 319 aa14.2□□□□□ -0.14
PTPRF-201ENST00000359947 ST8SIA4Q92187 359 aa14.2□□□□□ -0.14
PTPRF-201ENST00000359947 BIN3Q9NQY0 253 aa14.2□□□□□ -0.14
PTPRF-201ENST00000359947 TRGV5A0A0B4J1U4 118 aa14.2□□□□□ -0.14
PTPRF-201ENST00000359947 HOXD11P31277 338 aaPredicted RBP14.2□□□□□ -0.14
PTPRF-201ENST00000359947 ZNF83P51522 516 aa14.2□□□□□ -0.14
PTPRF-201ENST00000359947 RBMS2Q15434 407 aaKnown RBP14.2□□□□□ -0.14
PTPRF-201ENST00000359947 WIPI1Q5MNZ9 446 aaPredicted RBP14.2□□□□□ -0.14
PTPRF-201ENST00000359947 CISD2Q8N5K1 135 aaKnown RBP14.2□□□□□ -0.14
PTPRF-201ENST00000359947 MTCH1Q9NZJ7 389 aa14.2□□□□□ -0.14
PTPRF-201ENST00000359947 M0R135 149 aa14.19□□□□□ -0.14
PTPRF-201ENST00000359947 M0R296 226 aa14.19□□□□□ -0.14
PTPRF-201ENST00000359947 TGM6O95932 706 aa14.19□□□□□ -0.14
PTPRF-201ENST00000359947 ZNF626Q68DY1 528 aa14.19□□□□□ -0.14
PTPRF-201ENST00000359947 UBE2FQ969M7 185 aa14.19□□□□□ -0.14
PTPRF-201ENST00000359947 ZNF799Q96GE5 643 aa14.19□□□□□ -0.14
PTPRF-201ENST00000359947 MRPL58Q14197 206 aaKnown RBP14.19□□□□□ -0.14
PTPRF-201ENST00000359947 SPRED3Q2MJR0 410 aa14.19□□□□□ -0.14
PTPRF-201ENST00000359947 YIF1BQ5BJH7 314 aa14.19□□□□□ -0.14
PTPRF-201ENST00000359947 FAM109BQ6ICB4 259 aaPredicted RBP14.19□□□□□ -0.14
PTPRF-201ENST00000359947 BPIFCQ8NFQ6 507 aa14.19□□□□□ -0.14
PTPRF-201ENST00000359947 FYTTD1Q96QD9 318 aaKnown RBP14.19□□□□□ -0.14
PTPRF-201ENST00000359947 LOC100289279A0A1B0GTE1 492 aa14.19□□□□□ -0.14
PTPRF-201ENST00000359947 TSPAN12O95859 305 aa14.19□□□□□ -0.14
PTPRF-201ENST00000359947 NID1P14543 1247 aa14.19□□□□□ -0.14
PTPRF-201ENST00000359947 CPEP16870 476 aa14.19□□□□□ -0.14
PTPRF-201ENST00000359947 CR2P20023 1033 aa14.19□□□□□ -0.14
PTPRF-201ENST00000359947 PRSS45Q7RTY3 260 aa14.19□□□□□ -0.14
PTPRF-201ENST00000359947 ENTHD1Q8IYW4 607 aa14.19□□□□□ -0.14
PTPRF-201ENST00000359947 NMES1Q9C002 83 aa14.19□□□□□ -0.14
PTPRF-201ENST00000359947 DUSP22Q9NRW4 184 aa14.19□□□□□ -0.14
PTPRF-201ENST00000359947 SPTY2D1-AS1A0A0U1RR47 76 aa14.19□□□□□ -0.14
PTPRF-201ENST00000359947 FPR3P25089 353 aa14.19□□□□□ -0.14
PTPRF-201ENST00000359947 CDAP32320 146 aa14.19□□□□□ -0.14
PTPRF-201ENST00000359947 PEA15Q15121 130 aa14.19□□□□□ -0.14
PTPRF-201ENST00000359947 ZNF718Q3SXZ3 478 aa14.19□□□□□ -0.14
PTPRF-201ENST00000359947 HES3Q5TGS1 186 aa14.19□□□□□ -0.14
PTPRF-201ENST00000359947 C1orf87Q8N0U7 546 aa14.19□□□□□ -0.14
PTPRF-201ENST00000359947 PLPPR2Q96GM1 343 aa14.19□□□□□ -0.14
PTPRF-201ENST00000359947 SLCO1B1Q9Y6L6 691 aa14.19□□□□□ -0.14
PTPRF-201ENST00000359947 MEX3AA1L020 520 aaKnown RBP14.19□□□□□ -0.14
PTPRF-201ENST00000359947 FITM1A5D6W6 292 aa14.19□□□□□ -0.14
PTPRF-201ENST00000359947 PRPH2P23942 346 aa14.19□□□□□ -0.14
PTPRF-201ENST00000359947 PAX6P26367 422 aa14.19□□□□□ -0.14
PTPRF-201ENST00000359947 MRPL19P49406 292 aaKnown RBP14.19□□□□□ -0.14
PTPRF-201ENST00000359947 RGS7BPQ6MZT1 257 aaPredicted RBP14.19□□□□□ -0.14
PTPRF-201ENST00000359947 LINC01465Q8N7H1 131 aa14.19□□□□□ -0.14
PTPRF-201ENST00000359947 ALKBH3Q96Q83 286 aaPredicted RBP14.19□□□□□ -0.14
PTPRF-201ENST00000359947 OR52A5Q9H2C5 316 aa14.19□□□□□ -0.14
PTPRF-201ENST00000359947 GLTPQ9NZD2 209 aa14.19□□□□□ -0.14
PTPRF-201ENST00000359947 BHLHE40O14503 412 aa14.19□□□□□ -0.14
PTPRF-201ENST00000359947 MRPS14O60783 128 aaKnown RBP14.19□□□□□ -0.14
PTPRF-201ENST00000359947 CHRNB1P11230 501 aa14.19□□□□□ -0.14
PTPRF-201ENST00000359947 ZNF133P52736 654 aaPredicted RBP14.19□□□□□ -0.14
PTPRF-201ENST00000359947 CLVS2Q5SYC1 327 aa14.19□□□□□ -0.14
PTPRF-201ENST00000359947 THEM4Q5T1C6 240 aa14.19□□□□□ -0.14
PTPRF-201ENST00000359947 METTL17Q9H7H0 456 aaPredicted RBP14.19□□□□□ -0.14
PTPRF-201ENST00000359947 NUPL2O15504 423 aaKnown RBP14.18□□□□□ -0.14
PTPRF-201ENST00000359947 NAGAP17050 411 aa14.18□□□□□ -0.14
PTPRF-201ENST00000359947 HNRNPFP52597 415 aaKnown RBP14.18□□□□□ -0.14
PTPRF-201ENST00000359947 ELLP55199 621 aaPredicted RBP14.18□□□□□ -0.14
PTPRF-201ENST00000359947 THNSL2Q86YJ6 484 aa14.18□□□□□ -0.14
PTPRF-201ENST00000359947 SLC39A7Q92504 469 aa14.18□□□□□ -0.14
PTPRF-201ENST00000359947 NRAPQ86VF7 1730 aa14.18□□□□□ -0.14
PTPRF-201ENST00000359947 MAGEB4O15481 346 aaPredicted RBP14.18□□□□□ -0.14
PTPRF-201ENST00000359947 DOK3Q7L591 496 aa14.18□□□□□ -0.14
PTPRF-201ENST00000359947 OR5M11Q96RB7 305 aa14.18□□□□□ -0.14
PTPRF-201ENST00000359947 CENPOQ9BU64 300 aa14.18□□□□□ -0.14
PTPRF-201ENST00000359947 PLK3Q9H4B4 646 aa14.18□□□□□ -0.14
PTPRF-201ENST00000359947 SMCO4Q9NRQ5 59 aa14.18□□□□□ -0.14
PTPRF-201ENST00000359947 TXNL4BQ9NX01 149 aaKnown RBP14.18□□□□□ -0.14
PTPRF-201ENST00000359947 SYT5O00445 386 aa14.18□□□□□ -0.14
PTPRF-201ENST00000359947 NRASP01111 189 aa14.18□□□□□ -0.14
PTPRF-201ENST00000359947 GPR3P46089 330 aa14.18□□□□□ -0.14
PTPRF-201ENST00000359947 ADGRE4PQ86SQ3 457 aa14.18□□□□□ -0.14
PTPRF-201ENST00000359947 RAB22AQ9UL26 194 aa14.18□□□□□ -0.14
PTPRF-201ENST00000359947 MEIOCA2RUB1 952 aa14.18□□□□□ -0.14
PTPRF-201ENST00000359947 MBTPS2O43462 519 aa14.18□□□□□ -0.14
PTPRF-201ENST00000359947 WDR1O75083 606 aa14.18□□□□□ -0.14
PTPRF-201ENST00000359947 FOLR1P15328 257 aa14.18□□□□□ -0.14
PTPRF-201ENST00000359947 PPICP45877 212 aa14.18□□□□□ -0.14
PTPRF-201ENST00000359947 PLK5Q496M5 336 aa14.18□□□□□ -0.14
PTPRF-201ENST00000359947 LAIR1Q6GTX8 287 aa14.18□□□□□ -0.14
PTPRF-201ENST00000359947 NME2P22392 152 aa14.18□□□□□ -0.14
PTPRF-201ENST00000359947 HIST2H3PS2Q5TEC6 136 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms