RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 CDC42EP2O14613 210 aa16.28■□□□□ 0.2
CCDC28A-203ENST00000617445 PPIHO43447 177 aaKnown RBP16.28■□□□□ 0.2
CCDC28A-203ENST00000617445 COX5BP10606 129 aa16.28■□□□□ 0.2
CCDC28A-203ENST00000617445 CRYBB2P43320 205 aa16.28■□□□□ 0.2
CCDC28A-203ENST00000617445 MAGEB1P43366 347 aa16.28■□□□□ 0.2
CCDC28A-203ENST00000617445 GPR4P46093 362 aa16.28■□□□□ 0.2
CCDC28A-203ENST00000617445 ARHGDIAP52565 204 aa16.28■□□□□ 0.2
CCDC28A-203ENST00000617445 CCL8P80075 99 aa16.28■□□□□ 0.2
CCDC28A-203ENST00000617445 ALKBH6Q3KRA9 238 aa16.28■□□□□ 0.2
CCDC28A-203ENST00000617445 MBNL2Q5VZF2 373 aaKnown RBP16.28■□□□□ 0.2
CCDC28A-203ENST00000617445 GPR139Q6DWJ6 353 aa16.28■□□□□ 0.2
CCDC28A-203ENST00000617445 CLDN22Q8N7P3 220 aa16.28■□□□□ 0.2
CCDC28A-203ENST00000617445 AKR7LQ8NHP1 331 aa16.28■□□□□ 0.2
CCDC28A-203ENST00000617445 CLDND2Q8NHS1 167 aa16.28■□□□□ 0.2
CCDC28A-203ENST00000617445 MARS2Q96GW9 593 aaKnown RBP16.28■□□□□ 0.2
CCDC28A-203ENST00000617445 WNT5BQ9H1J7 359 aa16.28■□□□□ 0.2
CCDC28A-203ENST00000617445 POLE4Q9NR33 117 aa16.28■□□□□ 0.2
CCDC28A-203ENST00000617445 DCAF13Q9NV06 445 aaKnown RBP16.28■□□□□ 0.2
CCDC28A-203ENST00000617445 NDUFAF4Q9P032 175 aa16.28■□□□□ 0.2
CCDC28A-203ENST00000617445 NDRG4Q9ULP0 352 aaKnown RBP16.28■□□□□ 0.2
CCDC28A-203ENST00000617445 A0A1W2PPL8 197 aa16.27■□□□□ 0.2
CCDC28A-203ENST00000617445 PLSCR5A0PG75 271 aa16.27■□□□□ 0.2
CCDC28A-203ENST00000617445 PRSS37A4D1T9 235 aa16.27■□□□□ 0.2
CCDC28A-203ENST00000617445 PTP4A3O75365 173 aa16.27■□□□□ 0.2
CCDC28A-203ENST00000617445 NDUFB2O95178 105 aa16.27■□□□□ 0.2
CCDC28A-203ENST00000617445 NCK1P16333 377 aa16.27■□□□□ 0.2
CCDC28A-203ENST00000617445 ITGA2P17301 1181 aa16.27■□□□□ 0.2
CCDC28A-203ENST00000617445 WNT5AP41221 380 aa16.27■□□□□ 0.2
CCDC28A-203ENST00000617445 ZNF81P51508 661 aa16.27■□□□□ 0.2
CCDC28A-203ENST00000617445 SMIM11AP58511 58 aa16.27■□□□□ 0.2
CCDC28A-203ENST00000617445 CCNIQ14094 377 aa16.27■□□□□ 0.2
CCDC28A-203ENST00000617445 FAM122BQ7Z309 247 aa16.27■□□□□ 0.2
CCDC28A-203ENST00000617445 TSEN54Q7Z6J9 526 aaKnown RBP16.27■□□□□ 0.2
CCDC28A-203ENST00000617445 GLCCI1Q86VQ1 547 aa16.27■□□□□ 0.2
CCDC28A-203ENST00000617445 MEX3DQ86XN8 651 aaKnown RBP16.27■□□□□ 0.2
CCDC28A-203ENST00000617445 PHC2Q8IXK0 858 aa16.27■□□□□ 0.2
CCDC28A-203ENST00000617445 ZNF101Q8IZC7 436 aa16.27■□□□□ 0.2
CCDC28A-203ENST00000617445 KLF14Q8TD94 323 aaPredicted RBP16.27■□□□□ 0.2
CCDC28A-203ENST00000617445 ZNF570Q96NI8 536 aa16.27■□□□□ 0.2
CCDC28A-203ENST00000617445 GORASP2Q9H8Y8 452 aa16.27■□□□□ 0.2
CCDC28A-203ENST00000617445 ADA2Q9NZK5 511 aa16.27■□□□□ 0.2
CCDC28A-203ENST00000617445 IGHV1-69-2A0A0G2JMI3 117 aa16.26■□□□□ 0.19
CCDC28A-203ENST00000617445 TPD52L2O43399 206 aaKnown RBP16.26■□□□□ 0.19
CCDC28A-203ENST00000617445 SNX3O60493 162 aa16.26■□□□□ 0.19
CCDC28A-203ENST00000617445 ANPEPP15144 967 aa16.26■□□□□ 0.19
CCDC28A-203ENST00000617445 PPP1CBP62140 327 aa16.26■□□□□ 0.19
CCDC28A-203ENST00000617445 SCRN3Q0VDG4 424 aa16.26■□□□□ 0.19
CCDC28A-203ENST00000617445 ENDOGQ14249 297 aaKnown RBP16.26■□□□□ 0.19
CCDC28A-203ENST00000617445 KRT72Q14CN4 511 aa16.26■□□□□ 0.19
CCDC28A-203ENST00000617445 ZMAT1Q5H9K5 638 aa16.26■□□□□ 0.19
CCDC28A-203ENST00000617445 IL17RELQ6ZVW7 336 aa16.26■□□□□ 0.19
CCDC28A-203ENST00000617445 ZER1Q7Z7L7 766 aa16.26■□□□□ 0.19
CCDC28A-203ENST00000617445 C7orf34Q96L11 122 aa16.26■□□□□ 0.19
CCDC28A-203ENST00000617445 C4orf45Q96LM5 186 aa16.26■□□□□ 0.19
CCDC28A-203ENST00000617445 Q96M85 177 aa16.26■□□□□ 0.19
CCDC28A-203ENST00000617445 DIRC2Q96SL1 478 aa16.26■□□□□ 0.19
CCDC28A-203ENST00000617445 GPX7Q96SL4 187 aaPredicted RBP16.26■□□□□ 0.19
CCDC28A-203ENST00000617445 NRIP3Q9NQ35 241 aa16.26■□□□□ 0.19
CCDC28A-203ENST00000617445 EGFL7Q9UHF1 273 aa16.26■□□□□ 0.19
CCDC28A-203ENST00000617445 SIGLEC7Q9Y286 467 aa16.26■□□□□ 0.19
CCDC28A-203ENST00000617445 ADAM18Q9Y3Q7 739 aa16.26■□□□□ 0.19
CCDC28A-203ENST00000617445 TEX13CA0A0J9YWL9 993 aa16.25■□□□□ 0.19
CCDC28A-203ENST00000617445 ADH4P08319 380 aa16.25■□□□□ 0.19
CCDC28A-203ENST00000617445 ZNF26P17031 533 aaPredicted RBP16.25■□□□□ 0.19
CCDC28A-203ENST00000617445 SDHAP31040 664 aa16.25■□□□□ 0.19
CCDC28A-203ENST00000617445 SRP14P37108 136 aaKnown RBP16.25■□□□□ 0.19
CCDC28A-203ENST00000617445 LIMS1P48059 325 aa16.25■□□□□ 0.19
CCDC28A-203ENST00000617445 MMP15P51511 669 aa16.25■□□□□ 0.19
CCDC28A-203ENST00000617445 HFEQ30201 348 aa16.25■□□□□ 0.19
CCDC28A-203ENST00000617445 FGD3Q5JSP0 725 aa16.25■□□□□ 0.19
CCDC28A-203ENST00000617445 LIPNQ5VXI9 398 aa16.25■□□□□ 0.19
CCDC28A-203ENST00000617445 ZNF774Q6NX45 483 aa16.25■□□□□ 0.19
CCDC28A-203ENST00000617445 DPY19L2P2Q6ZN68 376 aa16.25■□□□□ 0.19
CCDC28A-203ENST00000617445 CPLX4Q7Z7G2 160 aa16.25■□□□□ 0.19
CCDC28A-203ENST00000617445 ADCK1Q86TW2 530 aa16.25■□□□□ 0.19
CCDC28A-203ENST00000617445 ABHD4Q8TB40 342 aa16.25■□□□□ 0.19
CCDC28A-203ENST00000617445 SLC25A40Q8TBP6 338 aa16.25■□□□□ 0.19
CCDC28A-203ENST00000617445 ELMOD3Q96FG2 381 aa16.25■□□□□ 0.19
CCDC28A-203ENST00000617445 FAM46AQ96IP4 442 aaKnown RBP16.25■□□□□ 0.19
CCDC28A-203ENST00000617445 DHRS1Q96LJ7 313 aa16.25■□□□□ 0.19
CCDC28A-203ENST00000617445 COG8Q96MW5 612 aa16.25■□□□□ 0.19
CCDC28A-203ENST00000617445 OR2J1Q9GZK6 312 aa16.25■□□□□ 0.19
CCDC28A-203ENST00000617445 EGLN1Q9GZT9 426 aa16.25■□□□□ 0.19
CCDC28A-203ENST00000617445 SAP30LQ9HAJ7 183 aa16.25■□□□□ 0.19
CCDC28A-203ENST00000617445 TBCCD1Q9NVR7 557 aa16.25■□□□□ 0.19
CCDC28A-203ENST00000617445 ZDHHC8Q9ULC8 765 aa16.25■□□□□ 0.19
CCDC28A-203ENST00000617445 AURKCQ9UQB9 309 aa16.25■□□□□ 0.19
CCDC28A-203ENST00000617445 WNK2Q9Y3S1 2297 aa16.25■□□□□ 0.19
CCDC28A-203ENST00000617445 CDC14BO60729 498 aa16.24■□□□□ 0.19
CCDC28A-203ENST00000617445 MSMBP08118 114 aa16.24■□□□□ 0.19
CCDC28A-203ENST00000617445 GAAP10253 952 aa16.24■□□□□ 0.19
CCDC28A-203ENST00000617445 OMPP47874 163 aa16.24■□□□□ 0.19
CCDC28A-203ENST00000617445 LMO4P61968 165 aa16.24■□□□□ 0.19
CCDC28A-203ENST00000617445 LSM6P62312 80 aaKnown RBP16.24■□□□□ 0.19
CCDC28A-203ENST00000617445 MESTQ5EB52 335 aa16.24■□□□□ 0.19
CCDC28A-203ENST00000617445 USP51Q70EK9 711 aa16.24■□□□□ 0.19
CCDC28A-203ENST00000617445 RFLNBQ8N5W9 214 aa16.24■□□□□ 0.19
CCDC28A-203ENST00000617445 NPEPL1Q8NDH3 523 aa16.24■□□□□ 0.19
CCDC28A-203ENST00000617445 OR51F2Q8NH61 342 aa16.24■□□□□ 0.19
CCDC28A-203ENST00000617445 IPCEF1Q8WWN9 437 aaPredicted RBP16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms