RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 ZNF730Q6ZMV8 503 aa14.1□□□□□ -0.15
CCDC28B-204ENST00000469003 RFPL4BQ6ZWI9 263 aa14.1□□□□□ -0.15
CCDC28B-204ENST00000469003 MBOAT2Q6ZWT7 520 aa14.1□□□□□ -0.15
CCDC28B-204ENST00000469003 SYT9Q86SS6 491 aa14.1□□□□□ -0.15
CCDC28B-204ENST00000469003 FAM156AQ8NDB6 213 aa14.1□□□□□ -0.15
CCDC28B-204ENST00000469003 OR13C2Q8NGS9 318 aa14.1□□□□□ -0.15
CCDC28B-204ENST00000469003 KLF14Q8TD94 323 aaPredicted RBP14.1□□□□□ -0.15
CCDC28B-204ENST00000469003 ELMOD3Q96FG2 381 aa14.1□□□□□ -0.15
CCDC28B-204ENST00000469003 HOPXQ9BPY8 73 aaPredicted RBP14.1□□□□□ -0.15
CCDC28B-204ENST00000469003 OR2J1Q9GZK6 312 aa14.1□□□□□ -0.15
CCDC28B-204ENST00000469003 METTL17Q9H7H0 456 aaPredicted RBP14.1□□□□□ -0.15
CCDC28B-204ENST00000469003 ZNF665Q9H7R5 613 aa14.1□□□□□ -0.15
CCDC28B-204ENST00000469003 ZNF446Q9NWS9 450 aa14.1□□□□□ -0.15
CCDC28B-204ENST00000469003 CLDN25C9JDP6 229 aa14.09□□□□□ -0.15
CCDC28B-204ENST00000469003 IGHV1-46P01743 117 aa14.09□□□□□ -0.15
CCDC28B-204ENST00000469003 LIPAP38571 399 aa14.09□□□□□ -0.15
CCDC28B-204ENST00000469003 SLC7A2P52569 658 aa14.09□□□□□ -0.15
CCDC28B-204ENST00000469003 PPP1CBP62140 327 aa14.09□□□□□ -0.15
CCDC28B-204ENST00000469003 HFEQ30201 348 aa14.09□□□□□ -0.15
CCDC28B-204ENST00000469003 ACSM5Q6NUN0 579 aa14.09□□□□□ -0.15
CCDC28B-204ENST00000469003 ZNF774Q6NX45 483 aa14.09□□□□□ -0.15
CCDC28B-204ENST00000469003 C8orf82Q6P1X6 216 aaPredicted RBP14.09□□□□□ -0.15
CCDC28B-204ENST00000469003 TBPL2Q6SJ96 375 aa14.09□□□□□ -0.15
CCDC28B-204ENST00000469003 TMPRSS11FQ6ZWK6 438 aa14.09□□□□□ -0.15
CCDC28B-204ENST00000469003 FKBP9P1Q75LS8 142 aa14.09□□□□□ -0.15
CCDC28B-204ENST00000469003 ABHD4Q8TB40 342 aa14.09□□□□□ -0.15
CCDC28B-204ENST00000469003 RAB39BQ96DA2 213 aa14.09□□□□□ -0.15
CCDC28B-204ENST00000469003 TIMD4Q96H15 378 aa14.09□□□□□ -0.15
CCDC28B-204ENST00000469003 HSH2DQ96JZ2 352 aa14.09□□□□□ -0.15
CCDC28B-204ENST00000469003 WACQ9BTA9 647 aa14.09□□□□□ -0.15
CCDC28B-204ENST00000469003 ANKRD19PQ9H560 264 aa14.09□□□□□ -0.15
CCDC28B-204ENST00000469003 ELOVL3Q9HB03 270 aa14.09□□□□□ -0.15
CCDC28B-204ENST00000469003 POLE4Q9NR33 117 aa14.09□□□□□ -0.15
CCDC28B-204ENST00000469003 CYSLTR2Q9NS75 346 aa14.09□□□□□ -0.15
CCDC28B-204ENST00000469003 CGGBP1Q9UFW8 167 aaPredicted RBP14.09□□□□□ -0.15
CCDC28B-204ENST00000469003 WIPI2Q9Y4P8 454 aa14.09□□□□□ -0.15
CCDC28B-204ENST00000469003 A0A0A6YYJ9 748 aa14.08□□□□□ -0.16
CCDC28B-204ENST00000469003 PLSCR5A0PG75 271 aa14.08□□□□□ -0.16
CCDC28B-204ENST00000469003 ZSCAN5BA6NJL1 495 aa14.08□□□□□ -0.16
CCDC28B-204ENST00000469003 C12orf71A8MTZ7 269 aa14.08□□□□□ -0.16
CCDC28B-204ENST00000469003 H7C1C5 153 aa14.08□□□□□ -0.16
CCDC28B-204ENST00000469003 CDC42EP2O14613 210 aa14.08□□□□□ -0.16
CCDC28B-204ENST00000469003 SPRY3O43610 288 aa14.08□□□□□ -0.16
CCDC28B-204ENST00000469003 CCDC22O60826 627 aa14.08□□□□□ -0.16
CCDC28B-204ENST00000469003 DEAF1O75398 565 aaPredicted RBP14.08□□□□□ -0.16
CCDC28B-204ENST00000469003 SERPINA1P01009 418 aa14.08□□□□□ -0.16
CCDC28B-204ENST00000469003 NGFP01138 241 aa14.08□□□□□ -0.16
CCDC28B-204ENST00000469003 ADH4P08319 380 aa14.08□□□□□ -0.16
CCDC28B-204ENST00000469003 CD14P08571 375 aa14.08□□□□□ -0.16
CCDC28B-204ENST00000469003 RPL4P36578 427 aaKnown RBP14.08□□□□□ -0.16
CCDC28B-204ENST00000469003 GPR4P46093 362 aa14.08□□□□□ -0.16
CCDC28B-204ENST00000469003 GSK3BP49841 420 aa14.08□□□□□ -0.16
CCDC28B-204ENST00000469003 ARHGDIAP52565 204 aa14.08□□□□□ -0.16
CCDC28B-204ENST00000469003 LCN6P62502 163 aa14.08□□□□□ -0.16
CCDC28B-204ENST00000469003 SCGB2A2Q13296 93 aa14.08□□□□□ -0.16
CCDC28B-204ENST00000469003 ZBED5Q49AG3 693 aa14.08□□□□□ -0.16
CCDC28B-204ENST00000469003 SHQ1Q6PI26 577 aaKnown RBP14.08□□□□□ -0.16
CCDC28B-204ENST00000469003 HACD2Q6Y1H2 254 aa14.08□□□□□ -0.16
CCDC28B-204ENST00000469003 CYP4Z1Q86W10 505 aa14.08□□□□□ -0.16
CCDC28B-204ENST00000469003 RAB1CQ92928 201 aa14.08□□□□□ -0.16
CCDC28B-204ENST00000469003 C4orf45Q96LM5 186 aa14.08□□□□□ -0.16
CCDC28B-204ENST00000469003 EFCAB1Q9HAE3 211 aa14.08□□□□□ -0.16
CCDC28B-204ENST00000469003 G6PC2Q9NQR9 355 aa14.08□□□□□ -0.16
CCDC28B-204ENST00000469003 GRHPRQ9UBQ7 328 aa14.08□□□□□ -0.16
CCDC28B-204ENST00000469003 NDRG4Q9ULP0 352 aaKnown RBP14.08□□□□□ -0.16
CCDC28B-204ENST00000469003 CACNG2Q9Y698 323 aa14.08□□□□□ -0.16
CCDC28B-204ENST00000469003 ENPP4Q9Y6X5 453 aa14.08□□□□□ -0.16
CCDC28B-204ENST00000469003 TANC2Q9HCD6 1990 aa14.07□□□□□ -0.16
CCDC28B-204ENST00000469003 NDUFAB1O14561 156 aa14.07□□□□□ -0.16
CCDC28B-204ENST00000469003 AHCYL1O43865 530 aa14.07□□□□□ -0.16
CCDC28B-204ENST00000469003 MPZL1O95297 269 aa14.07□□□□□ -0.16
CCDC28B-204ENST00000469003 PNPP00491 289 aa14.07□□□□□ -0.16
CCDC28B-204ENST00000469003 IGHV2-5P01817 119 aa14.07□□□□□ -0.16
CCDC28B-204ENST00000469003 SCG5P05408 212 aa14.07□□□□□ -0.16
CCDC28B-204ENST00000469003 COX5BP10606 129 aa14.07□□□□□ -0.16
CCDC28B-204ENST00000469003 MESTQ5EB52 335 aa14.07□□□□□ -0.16
CCDC28B-204ENST00000469003 ZMAT1Q5H9K5 638 aa14.07□□□□□ -0.16
CCDC28B-204ENST00000469003 FAHD2BQ6P2I3 314 aaPredicted RBP14.07□□□□□ -0.16
CCDC28B-204ENST00000469003 ARL9Q6T311 187 aa14.07□□□□□ -0.16
CCDC28B-204ENST00000469003 RRM2BQ7LG56 351 aa14.07□□□□□ -0.16
CCDC28B-204ENST00000469003 TEX29Q8N6K0 151 aa14.07□□□□□ -0.16
CCDC28B-204ENST00000469003 FAHD2AQ96GK7 314 aa14.07□□□□□ -0.16
CCDC28B-204ENST00000469003 Q96M85 177 aa14.07□□□□□ -0.16
CCDC28B-204ENST00000469003 DIRC2Q96SL1 478 aa14.07□□□□□ -0.16
CCDC28B-204ENST00000469003 NDEL1Q9GZM8 345 aa14.07□□□□□ -0.16
CCDC28B-204ENST00000469003 EGLN1Q9GZT9 426 aa14.07□□□□□ -0.16
CCDC28B-204ENST00000469003 OCEL1Q9H607 264 aa14.07□□□□□ -0.16
CCDC28B-204ENST00000469003 NMNAT1Q9HAN9 279 aaPredicted RBP14.07□□□□□ -0.16
CCDC28B-204ENST00000469003 KLHL21Q9UJP4 597 aa14.07□□□□□ -0.16
CCDC28B-204ENST00000469003 ZDHHC8Q9ULC8 765 aa14.07□□□□□ -0.16
CCDC28B-204ENST00000469003 TMEM5Q9Y2B1 443 aa14.07□□□□□ -0.16
CCDC28B-204ENST00000469003 ADAM18Q9Y3Q7 739 aa14.07□□□□□ -0.16
CCDC28B-204ENST00000469003 XKRYO14609 159 aa14.06□□□□□ -0.16
CCDC28B-204ENST00000469003 PLPP2O43688 288 aa14.06□□□□□ -0.16
CCDC28B-204ENST00000469003 UBOX5O94941 541 aa14.06□□□□□ -0.16
CCDC28B-204ENST00000469003 ZNF26P17031 533 aaPredicted RBP14.06□□□□□ -0.16
CCDC28B-204ENST00000469003 MDH1P40925 334 aaKnown RBP14.06□□□□□ -0.16
CCDC28B-204ENST00000469003 SLC3A1Q07837 685 aa14.06□□□□□ -0.16
CCDC28B-204ENST00000469003 SCRN3Q0VDG4 424 aa14.06□□□□□ -0.16
CCDC28B-204ENST00000469003 HSP90B2PQ58FF3 399 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 102 ms