RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 ARSDP51689 593 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 UBE2IP63279 158 aaKnown RBP4.48□□□□□ -1.69
CSMD3-201ENST00000297405 AQP6Q13520 282 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 ECM1Q16610 540 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 DCAF12L1Q5VU92 463 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 TMEM225Q6GV28 225 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 APOBEC3HQ6NTF7 200 aaKnown RBP4.48□□□□□ -1.69
CSMD3-201ENST00000297405 TAS1R3Q7RTX0 852 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 CTSFQ9UBX1 484 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 TERTO14746 1132 aaKnown RBP4.48□□□□□ -1.69
CSMD3-201ENST00000297405 DUS4LO95620 317 aaKnown RBP4.48□□□□□ -1.69
CSMD3-201ENST00000297405 MPC1LP0DKB6 136 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 DCAF7P61962 342 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 SEMG2Q02383 582 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 SURF2Q15527 256 aaPredicted RBP4.48□□□□□ -1.69
CSMD3-201ENST00000297405 TMEM241Q24JQ0 296 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 PRAMEF20Q5VT98 475 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 TMEM220Q6QAJ8 160 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 NPNTQ6UXI9 565 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 PRICKLE2Q7Z3G6 844 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 KIAA1958Q8N8K9 716 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 SFRP2Q96HF1 295 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 SLC17A9Q9BYT1 436 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 CD207Q9UJ71 328 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 ZFP30Q9Y2G7 519 aa4.48□□□□□ -1.69
CSMD3-201ENST00000297405 ZFP92A6NM28 416 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 SOD3P08294 240 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 RPL12P30050 165 aaKnown RBP4.47□□□□□ -1.69
CSMD3-201ENST00000297405 TMEM64Q6YI46 380 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 FBXO16Q8IX29 292 aaPredicted RBP4.47□□□□□ -1.69
CSMD3-201ENST00000297405 OR52P1PQ8NH57 321 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 C2CD4CQ8TF44 421 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 LHX4Q969G2 390 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 FYTTD1Q96QD9 318 aaKnown RBP4.47□□□□□ -1.69
CSMD3-201ENST00000297405 F2RL3Q96RI0 385 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 NEURL2Q9BR09 285 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 CLDN16Q9Y5I7 305 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 SPATA31A3Q5VYP0 1347 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 NEMP2A6NFY4 417 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 CHST1O43916 411 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 SIX3O95343 332 aaPredicted RBP4.47□□□□□ -1.69
CSMD3-201ENST00000297405 AGXTP21549 392 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 MRPL54Q6P161 138 aaKnown RBP4.47□□□□□ -1.69
CSMD3-201ENST00000297405 TMEM71Q6P5X7 295 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 USP53Q70EK8 1073 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 SLC6A18Q96N87 628 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 MCRIP1C9JLW8 97 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 SIGLEC5O15389 551 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 MAS1P04201 325 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 ARP10275 920 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 CD1BP29016 333 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 CRYBB1P53674 252 aaPredicted RBP4.47□□□□□ -1.69
CSMD3-201ENST00000297405 ERVFC1-1P60608 527 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 TMEM65Q6PI78 240 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 AGTRAPQ6RW13 159 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 LANCL3Q6ZV70 420 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 RBM23Q86U06 439 aaKnown RBP4.47□□□□□ -1.69
CSMD3-201ENST00000297405 EDARADDQ8WWZ3 215 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 STARD4Q96DR4 205 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 SPACA7Q96KW9 195 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 ASB16Q96NS5 453 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 WSB1Q9Y6I7 421 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 ZNF142P52746 1687 aaPredicted RBP4.47□□□□□ -1.69
CSMD3-201ENST00000297405 PRAMEF27A3QJZ7 478 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 PRAMEF25A6NGN4 478 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 CASTOR2A6NHX0 329 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 PRAMEF4O60810 478 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 DNLZQ5SXM8 178 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 PRAMEF9Q5VWM5 478 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 FDX2Q6P4F2 183 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 DHRS13Q6UX07 377 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 DPPA4Q7L190 304 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 ZNF573Q86YE8 665 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 OR5M9Q8NGP3 310 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 ATF6BQ99941 703 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 NMES1Q9C002 83 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 WDR76Q9H967 626 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 ASIC5Q9NY37 505 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 CCDC163A0A0D9SF12 145 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 SOX1O00570 391 aaPredicted RBP4.47□□□□□ -1.69
CSMD3-201ENST00000297405 ZNF728P0DKX0 622 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 LRFN4Q6PJG9 635 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 MKXQ8IYA7 352 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 BVESQ8NE79 360 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 UCN3Q969E3 161 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 NXPE3Q969Y0 559 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 CLIP3Q96DZ5 547 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 ZNF729A6NN14 1252 aaPredicted RBP4.47□□□□□ -1.69
CSMD3-201ENST00000297405 SLC6A1P30531 599 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 SMUG1Q53HV7 270 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 CDHR3Q6ZTQ4 885 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 CDC20BQ86Y33 519 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 FAM26EQ8N5C1 309 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 NEUROG1Q92886 237 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 ABHD14BQ96IU4 210 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 OSMRQ99650 979 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 KCNK6Q9Y257 313 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 OR51B4Q9Y5P0 310 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 BCL9LQ86UU0 1499 aa4.47□□□□□ -1.69
CSMD3-201ENST00000297405 ATG2AQ2TAZ0 1938 aa4.47□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 127.3 ms