RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 ZNF19P17023 458 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 FUT1P19526 365 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 NFYAP23511 347 aaPredicted RBP7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 SFTPDP35247 375 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 RAD52P43351 418 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 GPR4P46093 362 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 KCNJ5P48544 419 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 CDH11P55287 796 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 PLGLB1Q02325 96 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 Q0VFX4 171 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 PDZK1IP1Q13113 114 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 EXT1Q16394 746 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 KLHL26Q53HC5 615 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 ACER2Q5QJU3 275 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 SSX9Q7RTT3 188 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 RANBP3LQ86VV4 465 aaPredicted RBP7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 POGLUT1Q8NBL1 392 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 PAQR8Q8TEZ7 354 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 LRFN5Q96NI6 719 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 SLC38A2Q96QD8 506 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 STACQ99469 402 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 SUCNR1Q9BXA5 334 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 MFFQ9GZY8 342 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 CCDC86Q9H6F5 360 aaKnown RBP7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 MAGIXQ9H6Y5 334 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 ST6GALNAC1Q9NSC7 600 aaPredicted RBP7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 LRFN1Q9P244 771 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 RAXQ9Y2V3 346 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 UBE2QL1A1L167 161 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 SERINC4A6NH21 518 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 H1F0P07305 194 aaKnown RBP7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 FPR3P25089 353 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 NFYBP25208 207 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 FOXK1P85037 733 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 DEFA6Q01524 100 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 TOMM34Q15785 309 aaPredicted RBP7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 TMEM205Q6UW68 189 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 CEACAM19Q7Z692 300 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 NKAIN4Q8IVV8 208 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 ADIPOR1Q96A54 375 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 ABHD1Q96SE0 405 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 MARVELD1Q9BSK0 173 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 ZNF350Q9GZX5 532 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 MED20Q9H944 212 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 DLL4Q9NR61 685 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 ZFHX4Q86UP3 3567 aa7.84□□□□□ -1.15
LIMCH1-209ENST00000509277 RTTNQ86VV8 2226 aa7.83□□□□□ -1.16
LIMCH1-209ENST00000509277 PRAMEF25A6NGN4 478 aa7.83□□□□□ -1.16
LIMCH1-209ENST00000509277 FRG2CA6NGY1 282 aa7.83□□□□□ -1.16
LIMCH1-209ENST00000509277 GABRPO00591 440 aa7.83□□□□□ -1.16
LIMCH1-209ENST00000509277 SEC14L5O43304 696 aa7.83□□□□□ -1.16
LIMCH1-209ENST00000509277 P04436 131 aa7.83□□□□□ -1.16
LIMCH1-209ENST00000509277 CCL3P10147 92 aa7.83□□□□□ -1.16
LIMCH1-209ENST00000509277 PTAFRP25105 342 aa7.83□□□□□ -1.16
LIMCH1-209ENST00000509277 ACVR2AP27037 513 aa7.83□□□□□ -1.16
LIMCH1-209ENST00000509277 ADH7P40394 386 aa7.83□□□□□ -1.16
LIMCH1-209ENST00000509277 PITPNBP48739 271 aa7.83□□□□□ -1.16
LIMCH1-209ENST00000509277 RAB13P51153 203 aa7.83□□□□□ -1.16
LIMCH1-209ENST00000509277 LUMP51884 338 aaPredicted RBP7.83□□□□□ -1.16
LIMCH1-209ENST00000509277 HES5Q5TA89 166 aa7.83□□□□□ -1.16
LIMCH1-209ENST00000509277 TIGD3Q6B0B8 471 aa7.83□□□□□ -1.16
LIMCH1-209ENST00000509277 ZNF704Q6ZNC4 412 aaPredicted RBP7.83□□□□□ -1.16
LIMCH1-209ENST00000509277 GALNT16Q8N428 558 aa7.83□□□□□ -1.16
LIMCH1-209ENST00000509277 NFAM1Q8NET5 270 aaPredicted RBP7.83□□□□□ -1.16
LIMCH1-209ENST00000509277 SNX33Q8WV41 574 aa7.83□□□□□ -1.16
LIMCH1-209ENST00000509277 SPRYD4Q8WW59 207 aaPredicted RBP7.83□□□□□ -1.16
LIMCH1-209ENST00000509277 CREB3L1Q96BA8 519 aa7.83□□□□□ -1.16
LIMCH1-209ENST00000509277 ZNF764Q96H86 408 aaPredicted RBP7.83□□□□□ -1.16
LIMCH1-209ENST00000509277 SORCS2Q96PQ0 1159 aa7.83□□□□□ -1.16
LIMCH1-209ENST00000509277 ARHGAP9Q9BRR9 750 aa7.83□□□□□ -1.16
LIMCH1-209ENST00000509277 RSPO3Q9BXY4 272 aaPredicted RBP7.83□□□□□ -1.16
LIMCH1-209ENST00000509277 GPR87Q9BY21 358 aa7.83□□□□□ -1.16
LIMCH1-209ENST00000509277 NTMQ9P121 344 aa7.83□□□□□ -1.16
LIMCH1-209ENST00000509277 MYEF2Q9P2K5 600 aaKnown RBP7.83□□□□□ -1.16
LIMCH1-209ENST00000509277 TRAPPC4Q9Y296 219 aa7.83□□□□□ -1.16
LIMCH1-209ENST00000509277 PLEKHA6Q9Y2H5 1048 aa7.83□□□□□ -1.16
LIMCH1-209ENST00000509277 DOCK7Q96N67 2140 aa7.83□□□□□ -1.16
LIMCH1-209ENST00000509277 OR6C68A6NDL8 312 aa7.83□□□□□ -1.16
LIMCH1-209ENST00000509277 C21orf140B9A014 251 aa7.83□□□□□ -1.16
LIMCH1-209ENST00000509277 F5H0A9 414 aaPredicted RBP7.83□□□□□ -1.16
LIMCH1-209ENST00000509277 TLX3O43711 291 aaPredicted RBP7.83□□□□□ -1.16
LIMCH1-209ENST00000509277 EIF3GO75821 320 aaKnown RBP eCLIP7.83□□□□□ -1.16
LIMCH1-209ENST00000509277 RAB36O95755 333 aa7.83□□□□□ -1.16
LIMCH1-209ENST00000509277 CLPSP04118 112 aa7.83□□□□□ -1.16
LIMCH1-209ENST00000509277 NID1P14543 1247 aa7.83□□□□□ -1.16
LIMCH1-209ENST00000509277 NQO2P16083 231 aa7.83□□□□□ -1.16
LIMCH1-209ENST00000509277 CASRP41180 1078 aa7.83□□□□□ -1.16
LIMCH1-209ENST00000509277 WNT4P56705 351 aa7.83□□□□□ -1.16
LIMCH1-209ENST00000509277 GUCA2BQ16661 112 aa7.83□□□□□ -1.16
LIMCH1-209ENST00000509277 ALG10BQ5I7T1 473 aa7.83□□□□□ -1.16
LIMCH1-209ENST00000509277 RAET1LQ5VY80 246 aa7.83□□□□□ -1.16
LIMCH1-209ENST00000509277 ADAM5Q6NVV9 412 aa7.83□□□□□ -1.16
LIMCH1-209ENST00000509277 PM20D2Q8IYS1 436 aa7.83□□□□□ -1.16
LIMCH1-209ENST00000509277 BPIFCQ8NFQ6 507 aa7.83□□□□□ -1.16
LIMCH1-209ENST00000509277 OR51A7Q8NH64 312 aa7.83□□□□□ -1.16
LIMCH1-209ENST00000509277 TMEM255BQ8WV15 326 aa7.83□□□□□ -1.16
LIMCH1-209ENST00000509277 MEGF10Q96KG7 1140 aa7.83□□□□□ -1.16
LIMCH1-209ENST00000509277 FER1L6-AS2Q96M78 137 aa7.83□□□□□ -1.16
LIMCH1-209ENST00000509277 ZNF578Q96N58 590 aaPredicted RBP7.83□□□□□ -1.16
LIMCH1-209ENST00000509277 SLC26A1Q9H2B4 701 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms