RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 ERVK-19Q9WJR5 959 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 IGKV1D-42A0A075B6H8 117 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 TCRBV21S2A2A0A5A6 115 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 RTCAO00442 366 aaKnown RBP4.84□□□□□ -1.63
SYNE1-220ENST00000471834 WNT11O96014 354 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 S100PP25815 95 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 RRADP55042 308 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 VAMP2P63027 116 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 TOMM34Q15785 309 aaPredicted RBP4.84□□□□□ -1.63
SYNE1-220ENST00000471834 EMC4Q5J8M3 183 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 CDC20BQ86Y33 519 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 CCDC36Q8IYA8 594 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 ARRDC1Q8N5I2 433 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 IQCF1Q8N6M8 205 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 CELF5Q8N6W0 485 aaKnown RBP4.84□□□□□ -1.63
SYNE1-220ENST00000471834 OR8K3Q8NH51 312 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 ABHD5Q8WTS1 349 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 SLC35A4Q96G79 324 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 TREM1Q9NP99 234 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 MLXQ9UH92 298 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 FXYD6-FXYD2A0A087WZ82 144 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 LINC00587B1AMM8 73 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 EEF1E1O43324 174 aaKnown RBP4.84□□□□□ -1.63
SYNE1-220ENST00000471834 APOL3O95236 402 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 CA3P07451 260 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 HEXBP07686 556 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 TSPAN5P62079 268 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 FAM3AP98173 230 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 RELQ04864 619 aaPredicted RBP4.84□□□□□ -1.63
SYNE1-220ENST00000471834 POU4F3Q15319 338 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 RPS26P11Q5JNZ5 115 aaPredicted RBP4.84□□□□□ -1.63
SYNE1-220ENST00000471834 CRIP3Q6Q6R5 217 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 NRMQ8IXM6 262 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 RNF175Q8N4F7 328 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 INO80EQ8NBZ0 244 aaPredicted RBP4.84□□□□□ -1.63
SYNE1-220ENST00000471834 ZNF417Q8TAU3 575 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 GALNT14Q96FL9 552 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 LMF2Q9BU23 707 aaKnown RBP4.84□□□□□ -1.63
SYNE1-220ENST00000471834 MS4A7Q9GZW8 240 aaPredicted RBP4.84□□□□□ -1.63
SYNE1-220ENST00000471834 FXYD6Q9H0Q3 95 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 ISG20L2Q9H9L3 353 aaKnown RBP4.84□□□□□ -1.63
SYNE1-220ENST00000471834 CENPMQ9NSP4 180 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 GRHPRQ9UBQ7 328 aa4.84□□□□□ -1.63
SYNE1-220ENST00000471834 CLEC18AA5D8T8 446 aa4.84□□□□□ -1.64
SYNE1-220ENST00000471834 IFITM10A6NMD0 228 aa4.84□□□□□ -1.64
SYNE1-220ENST00000471834 TMEM14DPA8MWL7 114 aa4.84□□□□□ -1.64
SYNE1-220ENST00000471834 MT-ND4LP03901 98 aa4.84□□□□□ -1.64
SYNE1-220ENST00000471834 CTSLP07711 333 aa4.84□□□□□ -1.64
SYNE1-220ENST00000471834 CSNK2A2P19784 350 aaPredicted RBP4.84□□□□□ -1.64
SYNE1-220ENST00000471834 TCN2P20062 427 aa4.84□□□□□ -1.64
SYNE1-220ENST00000471834 CTGFP29279 349 aa4.84□□□□□ -1.64
SYNE1-220ENST00000471834 SDHAP31040 664 aa4.84□□□□□ -1.64
SYNE1-220ENST00000471834 CCKBRP32239 447 aa4.84□□□□□ -1.64
SYNE1-220ENST00000471834 UCNP55089 124 aa4.84□□□□□ -1.64
SYNE1-220ENST00000471834 INSL4Q14641 139 aa4.84□□□□□ -1.64
SYNE1-220ENST00000471834 ZNF750Q32MQ0 723 aa4.84□□□□□ -1.64
SYNE1-220ENST00000471834 FAM27D1Q5T7N8 215 aa4.84□□□□□ -1.64
SYNE1-220ENST00000471834 NKAIN2Q5VXU1 208 aa4.84□□□□□ -1.64
SYNE1-220ENST00000471834 CLEC18CQ8NCF0 446 aa4.84□□□□□ -1.64
SYNE1-220ENST00000471834 LGALS14Q8TCE9 139 aa4.84□□□□□ -1.64
SYNE1-220ENST00000471834 THAP3Q8WTV1 239 aaPredicted RBP4.84□□□□□ -1.64
SYNE1-220ENST00000471834 AQP3Q92482 292 aa4.84□□□□□ -1.64
SYNE1-220ENST00000471834 SCAMP4Q969E2 229 aa4.84□□□□□ -1.64
SYNE1-220ENST00000471834 TCEAL4Q96EI5 215 aa4.84□□□□□ -1.64
SYNE1-220ENST00000471834 KTI12Q96EK9 354 aaPredicted RBP4.84□□□□□ -1.64
SYNE1-220ENST00000471834 POTEKPQ9BYX7 375 aa4.84□□□□□ -1.64
SYNE1-220ENST00000471834 ATG5Q9H1Y0 275 aa4.84□□□□□ -1.64
SYNE1-220ENST00000471834 TMEM242Q9NWH2 141 aa4.84□□□□□ -1.64
SYNE1-220ENST00000471834 KCNS2Q9ULS6 477 aa4.84□□□□□ -1.64
SYNE1-220ENST00000471834 CYP8B1Q9UNU6 501 aa4.84□□□□□ -1.64
SYNE1-220ENST00000471834 GPR132Q9UNW8 380 aa4.84□□□□□ -1.64
SYNE1-220ENST00000471834 TRAV1-1A0A0B4J248 108 aa4.84□□□□□ -1.64
SYNE1-220ENST00000471834 SOCS6O14544 535 aa4.84□□□□□ -1.64
SYNE1-220ENST00000471834 NARSO43776 548 aaKnown RBP4.84□□□□□ -1.64
SYNE1-220ENST00000471834 CTAG2O75638 210 aa4.84□□□□□ -1.64
SYNE1-220ENST00000471834 HIST1H1BP16401 226 aaKnown RBP4.84□□□□□ -1.64
SYNE1-220ENST00000471834 CCL1P22362 96 aa4.84□□□□□ -1.64
SYNE1-220ENST00000471834 CD34P28906 385 aa4.84□□□□□ -1.64
SYNE1-220ENST00000471834 PREPP48147 710 aa4.84□□□□□ -1.64
SYNE1-220ENST00000471834 ZNF133P52736 654 aaPredicted RBP4.84□□□□□ -1.64
SYNE1-220ENST00000471834 ARG2P78540 354 aa4.84□□□□□ -1.64
SYNE1-220ENST00000471834 RAB12Q6IQ22 244 aa4.84□□□□□ -1.64
SYNE1-220ENST00000471834 STAC2Q6ZMT1 411 aa4.84□□□□□ -1.64
SYNE1-220ENST00000471834 TMED4Q7Z7H5 227 aa4.84□□□□□ -1.64
SYNE1-220ENST00000471834 TMEM173Q86WV6 379 aaPredicted RBP4.84□□□□□ -1.64
SYNE1-220ENST00000471834 CDRT4Q8N9R6 151 aa4.84□□□□□ -1.64
SYNE1-220ENST00000471834 BEND2Q8NDZ0 799 aa4.84□□□□□ -1.64
SYNE1-220ENST00000471834 PXT1Q8NFP0 134 aa4.84□□□□□ -1.64
SYNE1-220ENST00000471834 ACTRT3Q9BYD9 372 aa4.84□□□□□ -1.64
SYNE1-220ENST00000471834 LDHAL6BQ9BYZ2 381 aaPredicted RBP4.84□□□□□ -1.64
SYNE1-220ENST00000471834 UBE2ZQ9H832 354 aaPredicted RBP4.84□□□□□ -1.64
SYNE1-220ENST00000471834 UQCC1Q9NVA1 299 aa4.84□□□□□ -1.64
SYNE1-220ENST00000471834 FOXD3Q9UJU5 478 aaPredicted RBP4.84□□□□□ -1.64
SYNE1-220ENST00000471834 HDGFL3Q9Y3E1 203 aa4.84□□□□□ -1.64
SYNE1-220ENST00000471834 CXorf65A6NEN9 183 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 NPIPA2E9PIF3 369 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 ASAH2BP0C7U1 165 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 TACR3P29371 465 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 BTN1A1Q13410 526 aa4.83□□□□□ -1.64
SYNE1-220ENST00000471834 ZNF267Q14586 743 aaPredicted RBP4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms