RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 TRIP10Q15642 601 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 SGCAQ16586 387 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 CYBRD1Q53TN4 286 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 ALG10Q5BKT4 473 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 PABPC1L2AQ5JQF8 200 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 ARMC4Q5T2S8 1044 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 IL17RELQ6ZVW7 336 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 USP43Q70EL4 1123 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 LRP11Q86VZ4 500 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 CYP4Z1Q86W10 505 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 LRRC18Q8N456 261 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 SYT14Q8NB59 555 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 OR2T12Q8NG77 320 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 OR4M2Q8NGB6 313 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 OR4D11Q8NGI4 311 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 CLDND2Q8NHS1 167 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 BPIFA2Q96DR5 249 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 ELMOD3Q96FG2 381 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 THOC1Q96FV9 657 aaKnown RBP6.05□□□□□ -1.44
VPS41-208ENST00000448833 TPD52L3Q96J77 140 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 ZNF583Q96ND8 569 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 LRRC37BQ96QE4 947 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 ZNF347Q96SE7 839 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 SOX7Q9BT81 388 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 FNDC11Q9BVV2 318 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 TMEM120AQ9BXJ8 343 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 SAP30LQ9HAJ7 183 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 NDRG4Q9ULP0 352 aaKnown RBP6.05□□□□□ -1.44
VPS41-208ENST00000448833 FZR1Q9UM11 496 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 HIF3AQ9Y2N7 669 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 TANC2Q9HCD6 1990 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 DOCK11Q5JSL3 2073 aa6.05□□□□□ -1.44
VPS41-208ENST00000448833 WNK2Q9Y3S1 2297 aa6.04□□□□□ -1.44
VPS41-208ENST00000448833 LOC100996750A0A140TA64 210 aa6.04□□□□□ -1.44
VPS41-208ENST00000448833 ELOVL7A1L3X0 281 aa6.04□□□□□ -1.44
VPS41-208ENST00000448833 C5orf49A4QMS7 147 aa6.04□□□□□ -1.44
VPS41-208ENST00000448833 FAM220BPB1ANY3 271 aa6.04□□□□□ -1.44
VPS41-208ENST00000448833 TRIM77I1YAP6 450 aa6.04□□□□□ -1.44
VPS41-208ENST00000448833 FBP2O00757 339 aa6.04□□□□□ -1.44
VPS41-208ENST00000448833 XKRYO14609 159 aa6.04□□□□□ -1.44
VPS41-208ENST00000448833 SURF4O15260 269 aa6.04□□□□□ -1.44
VPS41-208ENST00000448833 ICMTO60725 284 aa6.04□□□□□ -1.44
VPS41-208ENST00000448833 RP2O75695 350 aa6.04□□□□□ -1.44
VPS41-208ENST00000448833 IGHMP01871 453 aa6.04□□□□□ -1.44
VPS41-208ENST00000448833 IFNW1P05000 195 aa6.04□□□□□ -1.44
VPS41-208ENST00000448833 ADH4P08319 380 aa6.04□□□□□ -1.44
VPS41-208ENST00000448833 MMP7P09237 267 aaPredicted RBP6.04□□□□□ -1.44
VPS41-208ENST00000448833 COX5BP10606 129 aa6.04□□□□□ -1.44
VPS41-208ENST00000448833 GSTM3P21266 225 aa6.04□□□□□ -1.44
VPS41-208ENST00000448833 CPT2P23786 658 aa6.04□□□□□ -1.44
VPS41-208ENST00000448833 FPR2P25090 351 aa6.04□□□□□ -1.44
VPS41-208ENST00000448833 LIMS1P48059 325 aa6.04□□□□□ -1.44
VPS41-208ENST00000448833 LMO4P61968 165 aa6.04□□□□□ -1.44
VPS41-208ENST00000448833 KLF10Q13118 480 aa6.04□□□□□ -1.44
VPS41-208ENST00000448833 MAD2L1BPQ15013 274 aaPredicted RBP6.04□□□□□ -1.44
VPS41-208ENST00000448833 RABL3Q5HYI8 236 aa6.04□□□□□ -1.44
VPS41-208ENST00000448833 MBNL2Q5VZF2 373 aaKnown RBP6.04□□□□□ -1.44
VPS41-208ENST00000448833 FAHD2BQ6P2I3 314 aaPredicted RBP6.04□□□□□ -1.44
VPS41-208ENST00000448833 C12orf54Q6X4T0 127 aa6.04□□□□□ -1.44
VPS41-208ENST00000448833 RINLQ6ZS11 566 aa6.04□□□□□ -1.44
VPS41-208ENST00000448833 OAFQ86UD1 273 aa6.04□□□□□ -1.44
VPS41-208ENST00000448833 NKAIN4Q8IVV8 208 aa6.04□□□□□ -1.44
VPS41-208ENST00000448833 NPEPL1Q8NDH3 523 aa6.04□□□□□ -1.44
VPS41-208ENST00000448833 ICA1LQ8NDH6 482 aa6.04□□□□□ -1.44
VPS41-208ENST00000448833 RP9Q8TA86 221 aaKnown RBP6.04□□□□□ -1.44
VPS41-208ENST00000448833 FGFBP3Q8TAT2 258 aa6.04□□□□□ -1.44
VPS41-208ENST00000448833 NANPQ8TBE9 248 aa6.04□□□□□ -1.44
VPS41-208ENST00000448833 TMEM255BQ8WV15 326 aa6.04□□□□□ -1.44
VPS41-208ENST00000448833 IPCEF1Q8WWN9 437 aaPredicted RBP6.04□□□□□ -1.44
VPS41-208ENST00000448833 FAHD2AQ96GK7 314 aa6.04□□□□□ -1.44
VPS41-208ENST00000448833 POM121L2Q96KW2 1035 aa6.04□□□□□ -1.44
VPS41-208ENST00000448833 PRRC1Q96M27 445 aa6.04□□□□□ -1.44
VPS41-208ENST00000448833 HOPXQ9BPY8 73 aaPredicted RBP6.04□□□□□ -1.44
VPS41-208ENST00000448833 KRTAP4-6Q9BYQ5 205 aa6.04□□□□□ -1.44
VPS41-208ENST00000448833 ANKRD19PQ9H560 264 aa6.04□□□□□ -1.44
VPS41-208ENST00000448833 METTL17Q9H7H0 456 aaPredicted RBP6.04□□□□□ -1.44
VPS41-208ENST00000448833 ZNF665Q9H7R5 613 aa6.04□□□□□ -1.44
VPS41-208ENST00000448833 KRCC1Q9NPI7 259 aaPredicted RBP6.04□□□□□ -1.44
VPS41-208ENST00000448833 MAN2C1Q9NTJ4 1040 aa6.04□□□□□ -1.44
VPS41-208ENST00000448833 TREM2Q9NZC2 230 aa6.04□□□□□ -1.44
VPS41-208ENST00000448833 MYEF2Q9P2K5 600 aaKnown RBP6.04□□□□□ -1.44
VPS41-208ENST00000448833 GRHPRQ9UBQ7 328 aa6.04□□□□□ -1.44
VPS41-208ENST00000448833 PCDHB10Q9UN67 800 aa6.04□□□□□ -1.44
VPS41-208ENST00000448833 PPIAL4EA0A075B759 164 aa6.03□□□□□ -1.44
VPS41-208ENST00000448833 PPIAL4CA0A0B4J2A2 164 aa6.03□□□□□ -1.44
VPS41-208ENST00000448833 LOC100653049A0A140TA62 436 aa6.03□□□□□ -1.44
VPS41-208ENST00000448833 EFCAB9A8MZ26 197 aa6.03□□□□□ -1.44
VPS41-208ENST00000448833 PPIAL4DF5H284 164 aa6.03□□□□□ -1.44
VPS41-208ENST00000448833 J3QW42 95 aa6.03□□□□□ -1.44
VPS41-208ENST00000448833 IFNL4K9M1U5 179 aa6.03□□□□□ -1.44
VPS41-208ENST00000448833 GSTA4O15217 222 aa6.03□□□□□ -1.44
VPS41-208ENST00000448833 CDC14BO60729 498 aa6.03□□□□□ -1.44
VPS41-208ENST00000448833 CCDC22O60826 627 aa6.03□□□□□ -1.44
VPS41-208ENST00000448833 GMNNO75496 209 aa6.03□□□□□ -1.44
VPS41-208ENST00000448833 KRT34O76011 436 aa6.03□□□□□ -1.44
VPS41-208ENST00000448833 MPZL1O95297 269 aa6.03□□□□□ -1.44
VPS41-208ENST00000448833 CLPTM1O96005 669 aa6.03□□□□□ -1.44
VPS41-208ENST00000448833 PPIAL4FP0DN26 164 aa6.03□□□□□ -1.44
VPS41-208ENST00000448833 IFI30P13284 250 aa6.03□□□□□ -1.44
VPS41-208ENST00000448833 CCL2P13500 99 aa6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 151.2 ms