RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 SLC22A18ASQ8N1D0 253 aa7.82□□□□□ -1.16
USP40-203ENST00000427112 STEAP2Q8NFT2 490 aa7.82□□□□□ -1.16
USP40-203ENST00000427112 LMX1AQ8TE12 382 aa7.82□□□□□ -1.16
USP40-203ENST00000427112 PAQR8Q8TEZ7 354 aa7.82□□□□□ -1.16
USP40-203ENST00000427112 FBXO17Q96EF6 278 aa7.82□□□□□ -1.16
USP40-203ENST00000427112 SLC25A44Q96H78 314 aaPredicted RBP7.82□□□□□ -1.16
USP40-203ENST00000427112 ZNF578Q96N58 590 aaPredicted RBP7.82□□□□□ -1.16
USP40-203ENST00000427112 TSPAN32Q96QS1 320 aa7.82□□□□□ -1.16
USP40-203ENST00000427112 SMIM3Q9BZL3 60 aa7.82□□□□□ -1.16
USP40-203ENST00000427112 COMMD4Q9H0A8 199 aa7.82□□□□□ -1.16
USP40-203ENST00000427112 ABRACLQ9P1F3 81 aa7.82□□□□□ -1.16
USP40-203ENST00000427112 COA3Q9Y2R0 106 aaPredicted RBP7.82□□□□□ -1.16
USP40-203ENST00000427112 POLR1DQ9Y2S0 133 aa7.82□□□□□ -1.16
USP40-203ENST00000427112 TPRP12270 2363 aaKnown RBP7.82□□□□□ -1.16
USP40-203ENST00000427112 IGKV1D-42A0A075B6H8 117 aa7.82□□□□□ -1.16
USP40-203ENST00000427112 A0A0B4J2A0 478 aa7.82□□□□□ -1.16
USP40-203ENST00000427112 F5H0A9 414 aaPredicted RBP7.82□□□□□ -1.16
USP40-203ENST00000427112 G3V3Y1 287 aa7.82□□□□□ -1.16
USP40-203ENST00000427112 FARS2O95363 451 aaKnown RBP7.82□□□□□ -1.16
USP40-203ENST00000427112 HLA-AP01891 365 aaKnown RBP7.82□□□□□ -1.16
USP40-203ENST00000427112 PMP2P02689 132 aa7.82□□□□□ -1.16
USP40-203ENST00000427112 S100A11P31949 105 aa7.82□□□□□ -1.16
USP40-203ENST00000427112 ACTA2P62736 377 aa7.82□□□□□ -1.16
USP40-203ENST00000427112 ACTG2P63267 376 aa7.82□□□□□ -1.16
USP40-203ENST00000427112 CXADRP78310 365 aa7.82□□□□□ -1.16
USP40-203ENST00000427112 ZNF169Q14929 603 aaPredicted RBP7.82□□□□□ -1.16
USP40-203ENST00000427112 Q499Y3 187 aa7.82□□□□□ -1.16
USP40-203ENST00000427112 FHL5Q5TD97 284 aa7.82□□□□□ -1.16
USP40-203ENST00000427112 TSSK4Q6SA08 328 aa7.82□□□□□ -1.16
USP40-203ENST00000427112 TMEM184AQ6ZMB5 413 aa7.82□□□□□ -1.16
USP40-203ENST00000427112 GLDNQ6ZMI3 551 aaPredicted RBP7.82□□□□□ -1.16
USP40-203ENST00000427112 COX15Q7KZN9 410 aa7.82□□□□□ -1.16
USP40-203ENST00000427112 KCTD20Q7Z5Y7 419 aa7.82□□□□□ -1.16
USP40-203ENST00000427112 ZNF227Q86WZ6 799 aa7.82□□□□□ -1.16
USP40-203ENST00000427112 OR2I1PQ8NGU4 316 aa7.82□□□□□ -1.16
USP40-203ENST00000427112 LILRB1Q8NHL6 650 aaPredicted RBP7.82□□□□□ -1.16
USP40-203ENST00000427112 FAM3DQ96BQ1 224 aa7.82□□□□□ -1.16
USP40-203ENST00000427112 ZNF416Q9BWM5 594 aa7.82□□□□□ -1.16
USP40-203ENST00000427112 FOXQ1Q9C009 403 aa7.82□□□□□ -1.16
USP40-203ENST00000427112 GPN1Q9HCN4 374 aaPredicted RBP7.82□□□□□ -1.16
USP40-203ENST00000427112 DUSP22Q9NRW4 184 aa7.82□□□□□ -1.16
USP40-203ENST00000427112 ST6GALNAC1Q9NSC7 600 aaPredicted RBP7.82□□□□□ -1.16
USP40-203ENST00000427112 VSX1Q9NZR4 365 aaPredicted RBP7.82□□□□□ -1.16
USP40-203ENST00000427112 STEAP1Q9UHE8 339 aa7.82□□□□□ -1.16
USP40-203ENST00000427112 SHPKQ9UHJ6 478 aa7.82□□□□□ -1.16
USP40-203ENST00000427112 YBX2Q9Y2T7 364 aaKnown RBP7.82□□□□□ -1.16
USP40-203ENST00000427112 HRH3Q9Y5N1 445 aa7.82□□□□□ -1.16
USP40-203ENST00000427112 CCDC163A0A0D9SF12 145 aa7.82□□□□□ -1.16
USP40-203ENST00000427112 ZNF705EA8MWA4 302 aaPredicted RBP7.82□□□□□ -1.16
USP40-203ENST00000427112 GABARAPH6UMI1 98 aa7.82□□□□□ -1.16
USP40-203ENST00000427112 MASP2O00187 686 aa7.82□□□□□ -1.16
USP40-203ENST00000427112 GPR31O00270 319 aa7.82□□□□□ -1.16
USP40-203ENST00000427112 SDCBPO00560 298 aaPredicted RBP7.82□□□□□ -1.16
USP40-203ENST00000427112 SCDO00767 359 aa7.82□□□□□ -1.16
USP40-203ENST00000427112 PRSS3P35030 304 aa7.82□□□□□ -1.16
USP40-203ENST00000427112 NFATC4Q14934 902 aa7.82□□□□□ -1.16
USP40-203ENST00000427112 LANCL3Q6ZV70 420 aa7.82□□□□□ -1.16
USP40-203ENST00000427112 NUDT18Q6ZVK8 323 aa7.82□□□□□ -1.16
USP40-203ENST00000427112 CBLN2Q8IUK8 224 aa7.82□□□□□ -1.16
USP40-203ENST00000427112 FAM86C1Q9NVL1 165 aa7.82□□□□□ -1.16
USP40-203ENST00000427112 KCNMB2Q9Y691 235 aa7.82□□□□□ -1.16
USP40-203ENST00000427112 PIAS3Q9Y6X2 628 aa7.82□□□□□ -1.16
USP40-203ENST00000427112 CNOT1A5YKK6 2376 aaKnown RBP7.81□□□□□ -1.16
USP40-203ENST00000427112 FGF19O95750 216 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 CTLA4P16410 223 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 GNB3P16520 340 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 KIR2DL1P43626 348 aaPredicted RBP7.81□□□□□ -1.16
USP40-203ENST00000427112 ARL4DP49703 201 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 ATP1B3P54709 279 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 POU4F2Q12837 409 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 CSRP2Q16527 193 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 OR2AK2Q8NG84 335 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 OR13C9Q8NGT0 318 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 OR14A16Q8NHC5 309 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 TOE1Q96GM8 510 aaKnown RBP7.81□□□□□ -1.16
USP40-203ENST00000427112 C5orf34Q96MH7 638 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 SLC38A3Q99624 504 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 PPA2Q9H2U2 334 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 ANKRD19PQ9H560 264 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 IFT22Q9H7X7 185 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 FAM96BQ9Y3D0 163 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 TNFSF12-TNFSF13A0A0A6YY99 330 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 TNFSF12O43508 249 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 FADS1O60427 444 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 GLCEO94923 617 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 THBS1P07996 1170 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 MST1P26927 711 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 CDAP32320 146 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 KIR3DL2P43630 455 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 ID4P47928 161 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 EGR4Q05215 589 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 NR0B2Q15466 257 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 LINC01590Q5TEZ4 76 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 STEAP1BQ6NZ63 245 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 ZNF101Q8IZC7 436 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 BPIFB2Q8N4F0 458 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 BAHD1Q8TBE0 780 aaPredicted RBP7.81□□□□□ -1.16
USP40-203ENST00000427112 TCEAL3Q969E4 200 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 SLC22A18Q96BI1 424 aa7.81□□□□□ -1.16
USP40-203ENST00000427112 UBL7Q96S82 380 aaPredicted RBP7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 83.9 ms