RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 SALL3Q9BXA9 1300 aa10.48□□□□□ -0.73
PTPN4-201ENST00000263708 DCTN6O00399 190 aa10.48□□□□□ -0.73
PTPN4-201ENST00000263708 HNRNPA3P51991 378 aaKnown RBP10.48□□□□□ -0.73
PTPN4-201ENST00000263708 C2CD4CQ8TF44 421 aa10.48□□□□□ -0.73
PTPN4-201ENST00000263708 GPR173Q9NS66 373 aa10.48□□□□□ -0.73
PTPN4-201ENST00000263708 IL37Q9NZH6 218 aa10.48□□□□□ -0.73
PTPN4-201ENST00000263708 FBXL4Q9UKA2 621 aa10.48□□□□□ -0.73
PTPN4-201ENST00000263708 SNAI1O95863 264 aaPredicted RBP10.48□□□□□ -0.73
PTPN4-201ENST00000263708 KCNJ10P78508 379 aa10.48□□□□□ -0.73
PTPN4-201ENST00000263708 KIAA0141Q14154 515 aaPredicted RBP10.48□□□□□ -0.73
PTPN4-201ENST00000263708 RTP4Q96DX8 246 aa10.48□□□□□ -0.73
PTPN4-201ENST00000263708 CACNA1SQ13698 1873 aa10.48□□□□□ -0.73
PTPN4-201ENST00000263708 NXNL2Q5VZ03 156 aa10.48□□□□□ -0.73
PTPN4-201ENST00000263708 FA2HQ7L5A8 372 aa10.48□□□□□ -0.73
PTPN4-201ENST00000263708 TTC9BQ8N6N2 239 aa10.48□□□□□ -0.73
PTPN4-201ENST00000263708 GJC3Q8NFK1 279 aa10.48□□□□□ -0.73
PTPN4-201ENST00000263708 OR2T11Q8NH01 316 aa10.48□□□□□ -0.73
PTPN4-201ENST00000263708 SLC38A5Q8WUX1 472 aa10.48□□□□□ -0.73
PTPN4-201ENST00000263708 LCORQ96JN0 433 aaPredicted RBP10.48□□□□□ -0.73
PTPN4-201ENST00000263708 FBXO34Q9NWN3 711 aa10.48□□□□□ -0.73
PTPN4-201ENST00000263708 PDGFBP01127 241 aaPredicted RBP10.48□□□□□ -0.73
PTPN4-201ENST00000263708 RBP4P02753 201 aa10.48□□□□□ -0.73
PTPN4-201ENST00000263708 FAM157BP0CG42 384 aa10.48□□□□□ -0.73
PTPN4-201ENST00000263708 IAPPP10997 89 aa10.48□□□□□ -0.73
PTPN4-201ENST00000263708 RHOBP62745 196 aa10.48□□□□□ -0.73
PTPN4-201ENST00000263708 JAG1P78504 1218 aa10.48□□□□□ -0.73
PTPN4-201ENST00000263708 TNFRSF17Q02223 184 aa10.48□□□□□ -0.73
PTPN4-201ENST00000263708 GLIPR1L1Q6UWM5 242 aa10.48□□□□□ -0.73
PTPN4-201ENST00000263708 TRILQ7L0X0 811 aa10.48□□□□□ -0.73
PTPN4-201ENST00000263708 LGI3Q8N145 548 aa10.48□□□□□ -0.73
PTPN4-201ENST00000263708 RPUSD4Q96CM3 377 aaKnown RBP10.48□□□□□ -0.73
PTPN4-201ENST00000263708 TRAV36DV7A0A075B6V5 113 aa10.48□□□□□ -0.73
PTPN4-201ENST00000263708 GPR75O95800 540 aa10.48□□□□□ -0.73
PTPN4-201ENST00000263708 HTN1P15515 57 aa10.48□□□□□ -0.73
PTPN4-201ENST00000263708 PITX1P78337 314 aaPredicted RBP10.48□□□□□ -0.73
PTPN4-201ENST00000263708 ZPBPQ9BS86 351 aa10.48□□□□□ -0.73
PTPN4-201ENST00000263708 GPR85P60893 370 aa10.48□□□□□ -0.73
PTPN4-201ENST00000263708 DUSP2Q05923 314 aa10.48□□□□□ -0.73
PTPN4-201ENST00000263708 MLLT11Q13015 90 aaPredicted RBP10.48□□□□□ -0.73
PTPN4-201ENST00000263708 OR2G6Q5TZ20 316 aa10.48□□□□□ -0.73
PTPN4-201ENST00000263708 ADGRE4PQ86SQ3 457 aa10.48□□□□□ -0.73
PTPN4-201ENST00000263708 EIF1P41567 113 aaKnown RBP10.48□□□□□ -0.73
PTPN4-201ENST00000263708 RAB38P57729 211 aa10.48□□□□□ -0.73
PTPN4-201ENST00000263708 OR1D5P58170 312 aa10.48□□□□□ -0.73
PTPN4-201ENST00000263708 SEMA3BQ13214 749 aa10.48□□□□□ -0.73
PTPN4-201ENST00000263708 ZNF385BQ569K4 471 aa10.48□□□□□ -0.73
PTPN4-201ENST00000263708 ZNF691Q5VV52 312 aa10.48□□□□□ -0.73
PTPN4-201ENST00000263708 TMEM65Q6PI78 240 aa10.48□□□□□ -0.73
PTPN4-201ENST00000263708 CDH26Q8IXH8 852 aa10.48□□□□□ -0.73
PTPN4-201ENST00000263708 OR5M8Q8NGP6 311 aa10.48□□□□□ -0.73
PTPN4-201ENST00000263708 EDAQ92838 391 aa10.48□□□□□ -0.73
PTPN4-201ENST00000263708 SEMG1P04279 462 aa10.47□□□□□ -0.73
PTPN4-201ENST00000263708 CYBAP13498 195 aa10.47□□□□□ -0.73
PTPN4-201ENST00000263708 HTR4Q13639 388 aa10.47□□□□□ -0.73
PTPN4-201ENST00000263708 RAB22AQ9UL26 194 aa10.47□□□□□ -0.73
PTPN4-201ENST00000263708 ZNF716A6NP11 495 aa10.47□□□□□ -0.73
PTPN4-201ENST00000263708 TYROBPO43914 113 aa10.47□□□□□ -0.73
PTPN4-201ENST00000263708 CCR6P51684 374 aa10.47□□□□□ -0.73
PTPN4-201ENST00000263708 RPS25P62851 125 aaKnown RBP10.47□□□□□ -0.73
PTPN4-201ENST00000263708 RANBP10Q6VN20 620 aa10.47□□□□□ -0.73
PTPN4-201ENST00000263708 ZNF574Q6ZN55 896 aaPredicted RBP10.47□□□□□ -0.73
PTPN4-201ENST00000263708 MUTYHQ9UIF7 546 aa10.47□□□□□ -0.73
PTPN4-201ENST00000263708 PADI1Q9ULC6 663 aa10.47□□□□□ -0.73
PTPN4-201ENST00000263708 PHRF1Q9P1Y6 1649 aaKnown RBP10.47□□□□□ -0.73
PTPN4-201ENST00000263708 CYR61O00622 381 aa10.47□□□□□ -0.73
PTPN4-201ENST00000263708 PHOX2AO14813 284 aa10.47□□□□□ -0.73
PTPN4-201ENST00000263708 CTBSQ01459 385 aa10.47□□□□□ -0.73
PTPN4-201ENST00000263708 OXA1LQ15070 435 aa10.47□□□□□ -0.73
PTPN4-201ENST00000263708 MARCH3Q86UD3 253 aa10.47□□□□□ -0.73
PTPN4-201ENST00000263708 ARHGEF39Q8N4T4 335 aa10.47□□□□□ -0.73
PTPN4-201ENST00000263708 LILRB1Q8NHL6 650 aaPredicted RBP10.47□□□□□ -0.73
PTPN4-201ENST00000263708 ACTR3CQ9C0K3 210 aaPredicted RBP10.47□□□□□ -0.73
PTPN4-201ENST00000263708 MEIKINA0A087WXM9 373 aa10.47□□□□□ -0.73
PTPN4-201ENST00000263708 GPR31O00270 319 aa10.47□□□□□ -0.73
PTPN4-201ENST00000263708 DNPH1O43598 174 aa10.47□□□□□ -0.73
PTPN4-201ENST00000263708 SYPL1Q16563 259 aa10.47□□□□□ -0.73
PTPN4-201ENST00000263708 SYT6Q5T7P8 510 aaPredicted RBP10.47□□□□□ -0.73
PTPN4-201ENST00000263708 HTR6P50406 440 aa10.47□□□□□ -0.73
PTPN4-201ENST00000263708 TRA2BP62995 288 aaKnown RBP10.47□□□□□ -0.73
PTPN4-201ENST00000263708 PRTGQ2VWP7 1150 aa10.47□□□□□ -0.73
PTPN4-201ENST00000263708 ISCA2Q86U28 154 aa10.47□□□□□ -0.73
PTPN4-201ENST00000263708 NPWQ8N729 165 aa10.47□□□□□ -0.73
PTPN4-201ENST00000263708 ZFPM2Q8WW38 1151 aa10.47□□□□□ -0.73
PTPN4-201ENST00000263708 ZNF583Q96ND8 569 aa10.47□□□□□ -0.73
PTPN4-201ENST00000263708 BCL9LQ86UU0 1499 aa10.47□□□□□ -0.73
PTPN4-201ENST00000263708 MDC1Q14676 2089 aaKnown RBP10.47□□□□□ -0.73
PTPN4-201ENST00000263708 UMAD1C9J7I0 102 aa10.47□□□□□ -0.73
PTPN4-201ENST00000263708 RNF224P0DH78 156 aa10.47□□□□□ -0.73
PTPN4-201ENST00000263708 IRS1P35568 1242 aa10.47□□□□□ -0.73
PTPN4-201ENST00000263708 ZNF140P52738 457 aaPredicted RBP10.47□□□□□ -0.73
PTPN4-201ENST00000263708 FABP9Q0Z7S8 132 aa10.47□□□□□ -0.73
PTPN4-201ENST00000263708 LYPD8Q6UX82 237 aa10.47□□□□□ -0.73
PTPN4-201ENST00000263708 CTSAP10619 480 aa10.47□□□□□ -0.73
PTPN4-201ENST00000263708 CEBPDP49716 269 aaPredicted RBP10.47□□□□□ -0.73
PTPN4-201ENST00000263708 ERVFC1-1P60608 527 aa10.47□□□□□ -0.73
PTPN4-201ENST00000263708 DRAM2Q6UX65 266 aa10.47□□□□□ -0.73
PTPN4-201ENST00000263708 BTNL3Q6UXE8 466 aa10.47□□□□□ -0.73
PTPN4-201ENST00000263708 ZNF778Q96MU6 729 aa10.47□□□□□ -0.73
PTPN4-201ENST00000263708 PROCRQ9UNN8 238 aa10.47□□□□□ -0.73
PTPN4-201ENST00000263708 ALOX12BO75342 701 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 79.8 ms