RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 ORC3Q9UBD5 711 aaPredicted RBP10.42□□□□□ -0.74
PDLIM5-222ENST00000615540 A0A1B0GUL7 405 aa10.42□□□□□ -0.74
PDLIM5-222ENST00000615540 GADD45BO75293 160 aaPredicted RBP10.42□□□□□ -0.74
PDLIM5-222ENST00000615540 MFSD6Q6ZSS7 791 aa10.42□□□□□ -0.74
PDLIM5-222ENST00000615540 TTLL7Q6ZT98 887 aa10.42□□□□□ -0.74
PDLIM5-222ENST00000615540 ZSCAN29Q8IWY8 852 aaPredicted RBP10.42□□□□□ -0.74
PDLIM5-222ENST00000615540 BABAM1Q9NWV8 329 aa10.41□□□□□ -0.74
PDLIM5-222ENST00000615540 DEPDC5O75140 1603 aa10.41□□□□□ -0.74
PDLIM5-222ENST00000615540 TAF5LO75529 589 aa10.41□□□□□ -0.74
PDLIM5-222ENST00000615540 CYP7A1P22680 504 aa10.41□□□□□ -0.74
PDLIM5-222ENST00000615540 CLIP2Q9UDT6 1046 aa10.41□□□□□ -0.74
PDLIM5-222ENST00000615540 ARHGEF40Q8TER5 1519 aa10.41□□□□□ -0.74
PDLIM5-222ENST00000615540 FRMPD1Q5SYB0 1578 aa10.41□□□□□ -0.74
PDLIM5-222ENST00000615540 PRC1O43663 620 aa10.41□□□□□ -0.74
PDLIM5-222ENST00000615540 NBPF5PQ86XG9 351 aaPredicted RBP10.41□□□□□ -0.74
PDLIM5-222ENST00000615540 WASF1Q92558 559 aa10.41□□□□□ -0.74
PDLIM5-222ENST00000615540 AK7Q96M32 723 aa10.41□□□□□ -0.74
PDLIM5-222ENST00000615540 MKNK2Q9HBH9 465 aa10.41□□□□□ -0.74
PDLIM5-222ENST00000615540 NOL7Q9UMY1 257 aaKnown RBP10.41□□□□□ -0.74
PDLIM5-222ENST00000615540 TMEM94Q12767 1356 aa10.41□□□□□ -0.74
PDLIM5-222ENST00000615540 MNS1Q8NEH6 495 aa10.41□□□□□ -0.74
PDLIM5-222ENST00000615540 RPS6KB1P23443 525 aa10.4□□□□□ -0.74
PDLIM5-222ENST00000615540 XAGE2Q96GT9 111 aa10.4□□□□□ -0.74
PDLIM5-222ENST00000615540 MCM5P33992 734 aa10.4□□□□□ -0.74
PDLIM5-222ENST00000615540 TXLNAP40222 546 aa10.4□□□□□ -0.74
PDLIM5-222ENST00000615540 ANO6Q4KMQ2 910 aa10.4□□□□□ -0.74
PDLIM5-222ENST00000615540 PTCH1Q13635 1447 aa10.4□□□□□ -0.74
PDLIM5-222ENST00000615540 SGSM2O43147 1006 aa10.4□□□□□ -0.74
PDLIM5-222ENST00000615540 KLHL10Q6JEL2 608 aa10.4□□□□□ -0.74
PDLIM5-222ENST00000615540 SEC62Q99442 399 aaKnown RBP10.4□□□□□ -0.74
PDLIM5-222ENST00000615540 NCOA5Q9HCD5 579 aaKnown RBP10.4□□□□□ -0.74
PDLIM5-222ENST00000615540 MARCKSP29966 332 aaPredicted RBP10.4□□□□□ -0.75
PDLIM5-222ENST00000615540 RFC4P35249 363 aa10.4□□□□□ -0.75
PDLIM5-222ENST00000615540 HMGN5P82970 282 aaKnown RBP10.4□□□□□ -0.75
PDLIM5-222ENST00000615540 DHX8Q14562 1220 aaKnown RBP10.4□□□□□ -0.75
PDLIM5-222ENST00000615540 FAM173BQ6P4H8 233 aa10.4□□□□□ -0.75
PDLIM5-222ENST00000615540 ZHX3Q9H4I2 956 aa10.4□□□□□ -0.75
PDLIM5-222ENST00000615540 NRXN1Q9ULB1 1477 aa10.39□□□□□ -0.75
PDLIM5-222ENST00000615540 LMTK3Q96Q04 1460 aa10.39□□□□□ -0.75
PDLIM5-222ENST00000615540 SOGA3Q5TF21 947 aa10.39□□□□□ -0.75
PDLIM5-222ENST00000615540 DNAJC10Q8IXB1 793 aa10.39□□□□□ -0.75
PDLIM5-222ENST00000615540 CDC5LQ99459 802 aaKnown RBP10.39□□□□□ -0.75
PDLIM5-222ENST00000615540 SYT1P21579 422 aa10.39□□□□□ -0.75
PDLIM5-222ENST00000615540 MAGEC2Q9UBF1 373 aaPredicted RBP10.39□□□□□ -0.75
PDLIM5-222ENST00000615540 KAT6BQ8WYB5 2073 aa10.39□□□□□ -0.75
PDLIM5-222ENST00000615540 A0A0D9SFI3 127 aa10.39□□□□□ -0.75
PDLIM5-222ENST00000615540 PTPDC1A2A3K4 754 aa10.39□□□□□ -0.75
PDLIM5-222ENST00000615540 HSP90AA4PQ58FG1 418 aa10.39□□□□□ -0.75
PDLIM5-222ENST00000615540 FAM182BQ5T319 152 aa10.39□□□□□ -0.75
PDLIM5-222ENST00000615540 ANKRD18AQ8IVF6 992 aa10.39□□□□□ -0.75
PDLIM5-222ENST00000615540 HOXB7P09629 217 aa10.39□□□□□ -0.75
PDLIM5-222ENST00000615540 IARSP41252 1262 aaKnown RBP10.39□□□□□ -0.75
PDLIM5-222ENST00000615540 F8W031 263 aaPredicted RBP10.38□□□□□ -0.75
PDLIM5-222ENST00000615540 ZNF771Q7L3S4 317 aaPredicted RBP10.38□□□□□ -0.75
PDLIM5-222ENST00000615540 RBSNQ9H1K0 784 aa10.38□□□□□ -0.75
PDLIM5-222ENST00000615540 SLAIN2Q9P270 581 aa10.38□□□□□ -0.75
PDLIM5-222ENST00000615540 EPS15P42566 896 aa10.38□□□□□ -0.75
PDLIM5-222ENST00000615540 VAT1LQ9HCJ6 419 aa10.38□□□□□ -0.75
PDLIM5-222ENST00000615540 KIF20BQ96Q89 1820 aa10.38□□□□□ -0.75
PDLIM5-222ENST00000615540 AOX1Q06278 1338 aa10.38□□□□□ -0.75
PDLIM5-222ENST00000615540 KRT18P05783 430 aaKnown RBP10.38□□□□□ -0.75
PDLIM5-222ENST00000615540 UQCRFS1P1P0C7P4 283 aa10.38□□□□□ -0.75
PDLIM5-222ENST00000615540 LRRC24Q50LG9 513 aa10.38□□□□□ -0.75
PDLIM5-222ENST00000615540 DACT1Q9NYF0 836 aa10.38□□□□□ -0.75
PDLIM5-222ENST00000615540 ADGRB1O14514 1584 aa10.38□□□□□ -0.75
PDLIM5-222ENST00000615540 SSH3Q8TE77 659 aa10.38□□□□□ -0.75
PDLIM5-222ENST00000615540 ALG1Q9BT22 464 aa10.38□□□□□ -0.75
PDLIM5-222ENST00000615540 ARMT1Q9H993 441 aa10.38□□□□□ -0.75
PDLIM5-222ENST00000615540 TRMT1Q9NXH9 659 aaKnown RBP10.38□□□□□ -0.75
PDLIM5-222ENST00000615540 RAD50Q92878 1312 aa10.38□□□□□ -0.75
PDLIM5-222ENST00000615540 NLRP5P59047 1200 aa10.38□□□□□ -0.75
PDLIM5-222ENST00000615540 CFAP100Q494V2 611 aa10.38□□□□□ -0.75
PDLIM5-222ENST00000615540 ARHGEF25Q86VW2 580 aa10.38□□□□□ -0.75
PDLIM5-222ENST00000615540 EYA2O00167 538 aa10.37□□□□□ -0.75
PDLIM5-222ENST00000615540 KCNQ4P56696 695 aa10.37□□□□□ -0.75
PDLIM5-222ENST00000615540 CATIPQ7Z7H3 387 aa10.37□□□□□ -0.75
PDLIM5-222ENST00000615540 DNAJC25Q9H1X3 360 aa10.37□□□□□ -0.75
PDLIM5-222ENST00000615540 AXIN2Q9Y2T1 843 aa10.37□□□□□ -0.75
PDLIM5-222ENST00000615540 ARHGEF28Q8N1W1 1705 aaKnown RBP10.37□□□□□ -0.75
PDLIM5-222ENST00000615540 CTDSPL2Q05D32 466 aa10.37□□□□□ -0.75
PDLIM5-222ENST00000615540 GOLGA6L1Q8N7Z2 621 aa10.37□□□□□ -0.75
PDLIM5-222ENST00000615540 CNNM3Q8NE01 707 aa10.37□□□□□ -0.75
PDLIM5-222ENST00000615540 SSBP05455 408 aaKnown RBP eCLIP10.37□□□□□ -0.75
PDLIM5-222ENST00000615540 HSPA4P34932 840 aa10.37□□□□□ -0.75
PDLIM5-222ENST00000615540 FILIP1LQ4L180 1135 aa10.37□□□□□ -0.75
PDLIM5-222ENST00000615540 CDC37L1Q7L3B6 337 aa10.37□□□□□ -0.75
PDLIM5-222ENST00000615540 EAF2Q96CJ1 260 aaPredicted RBP10.37□□□□□ -0.75
PDLIM5-222ENST00000615540 SETDB2Q96T68 719 aa10.37□□□□□ -0.75
PDLIM5-222ENST00000615540 ANO10Q9NW15 660 aa10.37□□□□□ -0.75
PDLIM5-222ENST00000615540 MYOM1P52179 1685 aa10.37□□□□□ -0.75
PDLIM5-222ENST00000615540 UBAP1LF5GYI3 381 aa10.37□□□□□ -0.75
PDLIM5-222ENST00000615540 STX1AQ16623 288 aa10.37□□□□□ -0.75
PDLIM5-222ENST00000615540 MAGEB6P1A0A0J9YX57 407 aa10.37□□□□□ -0.75
PDLIM5-222ENST00000615540 C6orf229H3BNL8 230 aa10.37□□□□□ -0.75
PDLIM5-222ENST00000615540 IPO7O95373 1038 aaKnown RBP10.37□□□□□ -0.75
PDLIM5-222ENST00000615540 WTAPQ15007 396 aa10.37□□□□□ -0.75
PDLIM5-222ENST00000615540 DACH1Q9UI36 760 aa10.37□□□□□ -0.75
PDLIM5-222ENST00000615540 CCDC43Q96MW1 224 aaKnown RBP10.36□□□□□ -0.75
PDLIM5-222ENST00000615540 CEP131Q9UPN4 1083 aa10.36□□□□□ -0.75
PDLIM5-222ENST00000615540 MBD4O95243 580 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms