RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 GJA3Q9Y6H8 435 aa20.5■□□□□ 0.87
TRIM28-206ENST00000595974 PSME4Q14997 1843 aa20.5■□□□□ 0.87
TRIM28-206ENST00000595974 CEP350Q5VT06 3117 aa20.49■□□□□ 0.87
TRIM28-206ENST00000595974 UFL1O94874 794 aa20.49■□□□□ 0.87
TRIM28-206ENST00000595974 FOXO4P98177 505 aa20.49■□□□□ 0.87
TRIM28-206ENST00000595974 UTYO14607 1347 aa20.49■□□□□ 0.87
TRIM28-206ENST00000595974 SCN9AQ15858 1988 aa20.48■□□□□ 0.87
TRIM28-206ENST00000595974 KIF16BQ96L93 1317 aa20.48■□□□□ 0.87
TRIM28-206ENST00000595974 ANKRD18BA2A2Z9 1011 aa20.47■□□□□ 0.87
TRIM28-206ENST00000595974 ATP2B4P23634 1241 aa20.47■□□□□ 0.87
TRIM28-206ENST00000595974 LMOD1P29536 600 aaPredicted RBP20.47■□□□□ 0.87
TRIM28-206ENST00000595974 EPHX2P34913 555 aa20.47■□□□□ 0.87
TRIM28-206ENST00000595974 RARSP54136 660 aaKnown RBP20.47■□□□□ 0.87
TRIM28-206ENST00000595974 CXCL9Q07325 125 aa20.47■□□□□ 0.87
TRIM28-206ENST00000595974 CIAPIN1Q6FI81 312 aa20.47■□□□□ 0.87
TRIM28-206ENST00000595974 MINPP1Q9UNW1 487 aa20.47■□□□□ 0.87
TRIM28-206ENST00000595974 YDJCA8MPS7 323 aa20.46■□□□□ 0.87
TRIM28-206ENST00000595974 RIMBP2O15034 1052 aa20.46■□□□□ 0.87
TRIM28-206ENST00000595974 SCNN1DP51172 638 aa20.46■□□□□ 0.87
TRIM28-206ENST00000595974 APLP1P51693 650 aa20.46■□□□□ 0.87
TRIM28-206ENST00000595974 IFIT5Q13325 482 aaKnown RBP20.46■□□□□ 0.87
TRIM28-206ENST00000595974 TNIP1Q15025 636 aa20.46■□□□□ 0.87
TRIM28-206ENST00000595974 PNMA8AQ86V59 439 aaPredicted RBP20.46■□□□□ 0.87
TRIM28-206ENST00000595974 LDHDQ86WU2 507 aa20.46■□□□□ 0.87
TRIM28-206ENST00000595974 MPHOSPH8Q99549 860 aa20.46■□□□□ 0.87
TRIM28-206ENST00000595974 ZC3H12CQ9C0D7 883 aaKnown RBP20.46■□□□□ 0.87
TRIM28-206ENST00000595974 ZBED9Q6R2W3 1325 aa20.46■□□□□ 0.87
TRIM28-206ENST00000595974 EPHA10Q5JZY3 1008 aa20.45■□□□□ 0.86
TRIM28-206ENST00000595974 CHADLQ6NUI6 762 aa20.45■□□□□ 0.86
TRIM28-206ENST00000595974 LMBR1LQ6UX01 489 aa20.45■□□□□ 0.86
TRIM28-206ENST00000595974 GPR101Q96P66 508 aaPredicted RBP20.45■□□□□ 0.86
TRIM28-206ENST00000595974 DBNDD1Q9H9R9 158 aa20.45■□□□□ 0.86
TRIM28-206ENST00000595974 CHMP3Q9Y3E7 222 aa20.45■□□□□ 0.86
TRIM28-206ENST00000595974 ECE2O60344 883 aa20.44■□□□□ 0.86
TRIM28-206ENST00000595974 RAD17O75943 681 aa20.44■□□□□ 0.86
TRIM28-206ENST00000595974 NBPF7P0C2Y1 421 aaPredicted RBP20.44■□□□□ 0.86
TRIM28-206ENST00000595974 POTEIP0CG38 1075 aa20.44■□□□□ 0.86
TRIM28-206ENST00000595974 POTEJP0CG39 1038 aa20.44■□□□□ 0.86
TRIM28-206ENST00000595974 SUCLG2Q96I99 432 aa20.44■□□□□ 0.86
TRIM28-206ENST00000595974 API5Q9BZZ5 524 aaKnown RBP20.44■□□□□ 0.86
TRIM28-206ENST00000595974 NOB1Q9ULX3 412 aaKnown RBP20.44■□□□□ 0.86
TRIM28-206ENST00000595974 MED23Q9ULK4 1368 aa20.44■□□□□ 0.86
TRIM28-206ENST00000595974 CCT4P50991 539 aaKnown RBP20.43■□□□□ 0.86
TRIM28-206ENST00000595974 CCDC57Q2TAC2 916 aa20.43■□□□□ 0.86
TRIM28-206ENST00000595974 EAPPQ56P03 285 aaPredicted RBP20.43■□□□□ 0.86
TRIM28-206ENST00000595974 ANKRD2Q9GZV1 360 aa20.43■□□□□ 0.86
TRIM28-206ENST00000595974 GPRC5DQ9NZD1 345 aa20.43■□□□□ 0.86
TRIM28-206ENST00000595974 GMPSP49915 693 aaPredicted RBP20.42■□□□□ 0.86
TRIM28-206ENST00000595974 KAZALD1Q96I82 304 aa20.42■□□□□ 0.86
TRIM28-206ENST00000595974 LEMD3Q9Y2U8 911 aa20.42■□□□□ 0.86
TRIM28-206ENST00000595974 G3V3G9 751 aa20.41■□□□□ 0.86
TRIM28-206ENST00000595974 EPS15P42566 896 aa20.41■□□□□ 0.86
TRIM28-206ENST00000595974 DOK7Q18PE1 504 aa20.41■□□□□ 0.86
TRIM28-206ENST00000595974 DCAF8Q5TAQ9 597 aa20.41■□□□□ 0.86
TRIM28-206ENST00000595974 ARHGAP45Q92619 1136 aa20.41■□□□□ 0.86
TRIM28-206ENST00000595974 PSMD14O00487 310 aa20.4■□□□□ 0.86
TRIM28-206ENST00000595974 ZNF646O15015 1829 aaPredicted RBP20.4■□□□□ 0.86
TRIM28-206ENST00000595974 CHRNDQ07001 517 aa20.4■□□□□ 0.86
TRIM28-206ENST00000595974 RABL6Q3YEC7 729 aaPredicted RBP20.4■□□□□ 0.86
TRIM28-206ENST00000595974 TAF7LQ5H9L4 462 aa20.4■□□□□ 0.86
TRIM28-206ENST00000595974 USP44Q9H0E7 712 aa20.4■□□□□ 0.86
TRIM28-206ENST00000595974 BICC1Q9H694 974 aaKnown RBP20.4■□□□□ 0.86
TRIM28-206ENST00000595974 ZNF609O15014 1411 aa20.39■□□□□ 0.85
TRIM28-206ENST00000595974 USP50Q70EL3 339 aaPredicted RBP20.39■□□□□ 0.85
TRIM28-206ENST00000595974 ADARB2Q9NS39 739 aaKnown RBP20.39■□□□□ 0.85
TRIM28-206ENST00000595974 ZNF804BA4D1E1 1349 aa20.38■□□□□ 0.85
TRIM28-206ENST00000595974 RPS12P25398 132 aaKnown RBP20.38■□□□□ 0.85
TRIM28-206ENST00000595974 DPF2Q92785 391 aa20.38■□□□□ 0.85
TRIM28-206ENST00000595974 CLEC11AQ9Y240 323 aa20.38■□□□□ 0.85
TRIM28-206ENST00000595974 IPO8O15397 1037 aaKnown RBP20.37■□□□□ 0.85
TRIM28-206ENST00000595974 KCNJ4P48050 445 aa20.37■□□□□ 0.85
TRIM28-206ENST00000595974 LDHAL6AQ6ZMR3 332 aa20.37■□□□□ 0.85
TRIM28-206ENST00000595974 PODNQ7Z5L7 613 aa20.37■□□□□ 0.85
TRIM28-206ENST00000595974 ANKRD44Q8N8A2 993 aa20.37■□□□□ 0.85
TRIM28-206ENST00000595974 ZNF594Q96JF6 807 aaPredicted RBP20.37■□□□□ 0.85
TRIM28-206ENST00000595974 WTIPA6NIX2 430 aaPredicted RBP20.36■□□□□ 0.85
TRIM28-206ENST00000595974 KCNQ5Q9NR82 932 aa20.36■□□□□ 0.85
TRIM28-206ENST00000595974 CNNM1Q9NRU3 951 aa20.36■□□□□ 0.85
TRIM28-206ENST00000595974 TRPM7Q96QT4 1865 aa20.35■□□□□ 0.85
TRIM28-206ENST00000595974 VIL1P09327 827 aaKnown RBP20.35■□□□□ 0.85
TRIM28-206ENST00000595974 UBTFL1P0CB47 393 aaPredicted RBP20.35■□□□□ 0.85
TRIM28-206ENST00000595974 MICALL2Q8IY33 904 aa20.35■□□□□ 0.85
TRIM28-206ENST00000595974 COA1Q9GZY4 146 aa20.35■□□□□ 0.85
TRIM28-206ENST00000595974 CNOT7Q9UIV1 285 aaKnown RBP20.35■□□□□ 0.85
TRIM28-206ENST00000595974 ZBTB12Q9Y330 459 aaPredicted RBP20.35■□□□□ 0.85
TRIM28-206ENST00000595974 PASKQ96RG2 1323 aa20.34■□□□□ 0.85
TRIM28-206ENST00000595974 H7C1D1 291 aa20.34■□□□□ 0.85
TRIM28-206ENST00000595974 BCAR3O75815 825 aa20.34■□□□□ 0.85
TRIM28-206ENST00000595974 INTS3Q68E01 1043 aaKnown RBP20.34■□□□□ 0.85
TRIM28-206ENST00000595974 HDAC5Q9UQL6 1122 aa20.34■□□□□ 0.85
TRIM28-206ENST00000595974 USP17L3A6NCW0 530 aa20.33■□□□□ 0.85
TRIM28-206ENST00000595974 USP17L4A6NCW7 530 aa20.33■□□□□ 0.85
TRIM28-206ENST00000595974 ITGBL1O95965 494 aaPredicted RBP20.33■□□□□ 0.85
TRIM28-206ENST00000595974 TRIM27P14373 513 aa20.33■□□□□ 0.85
TRIM28-206ENST00000595974 MAP1SQ66K74 1059 aaPredicted RBP20.33■□□□□ 0.85
TRIM28-206ENST00000595974 ATF7IPQ6VMQ6 1270 aa20.33■□□□□ 0.85
TRIM28-206ENST00000595974 C15orf52Q6ZUT6 534 aaKnown RBP20.33■□□□□ 0.85
TRIM28-206ENST00000595974 USP17L1Q7RTZ2 530 aa20.33■□□□□ 0.85
TRIM28-206ENST00000595974 TXNRD3Q86VQ6 643 aa20.33■□□□□ 0.85
TRIM28-206ENST00000595974 CNTROBQ8N137 903 aa20.33■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms