RNA–Protein interactions for RNA: ENST00000582092.1

SS18-220, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 215 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-220ENST00000582092 KAZALD1Q96I82 304 aa11.28□□□□□ -0.6
SS18-220ENST00000582092 CACNA1SQ13698 1873 aa11.27□□□□□ -0.6
SS18-220ENST00000582092 CCDC88AQ3V6T2 1871 aa11.27□□□□□ -0.6
SS18-220ENST00000582092 HSP90AA1P07900 732 aaKnown RBP11.27□□□□□ -0.61
SS18-220ENST00000582092 RBM25P49756 843 aaKnown RBP11.27□□□□□ -0.61
SS18-220ENST00000582092 IFIT5Q13325 482 aaKnown RBP11.27□□□□□ -0.61
SS18-220ENST00000582092 GORABQ5T7V8 394 aa11.27□□□□□ -0.61
SS18-220ENST00000582092 CCDC8Q9H0W5 538 aaPredicted RBP11.27□□□□□ -0.61
SS18-220ENST00000582092 DIAPH3Q9NSV4 1193 aa11.27□□□□□ -0.61
SS18-220ENST00000582092 CEP126Q9P2H0 1117 aa11.27□□□□□ -0.61
SS18-220ENST00000582092 SBF1O95248 1867 aa11.26□□□□□ -0.61
SS18-220ENST00000582092 MAP4K4O95819 1239 aaPredicted RBP11.26□□□□□ -0.61
SS18-220ENST00000582092 IL15P40933 162 aaPredicted RBP11.26□□□□□ -0.61
SS18-220ENST00000582092 SLC4A3P48751 1232 aa11.26□□□□□ -0.61
SS18-220ENST00000582092 CASP7P55210 303 aa11.26□□□□□ -0.61
SS18-220ENST00000582092 FOXO4P98177 505 aa11.26□□□□□ -0.61
SS18-220ENST00000582092 PARP10Q53GL7 1025 aa11.26□□□□□ -0.61
SS18-220ENST00000582092 SOGA3Q5TF21 947 aa11.26□□□□□ -0.61
SS18-220ENST00000582092 KLHDC4Q8TBB5 520 aa11.26□□□□□ -0.61
SS18-220ENST00000582092 EVI5LQ96CN4 794 aa11.26□□□□□ -0.61
SS18-220ENST00000582092 FAM89AQ96GI7 184 aa11.26□□□□□ -0.61
SS18-220ENST00000582092 MASTLQ96GX5 879 aa11.26□□□□□ -0.61
SS18-220ENST00000582092 NEUROD6Q96NK8 337 aa11.26□□□□□ -0.61
SS18-220ENST00000582092 GPBP1L1Q9HC44 474 aaPredicted RBP11.26□□□□□ -0.61
SS18-220ENST00000582092 AKAP2Q9Y2D5 859 aa11.26□□□□□ -0.61
SS18-220ENST00000582092 SALL3Q9BXA9 1300 aa11.26□□□□□ -0.61
SS18-220ENST00000582092 ANKRD18BA2A2Z9 1011 aa11.25□□□□□ -0.61
SS18-220ENST00000582092 FAM177BA6PVY3 158 aa11.25□□□□□ -0.61
SS18-220ENST00000582092 IRS4O14654 1257 aaPredicted RBP11.25□□□□□ -0.61
SS18-220ENST00000582092 PDE8AO60658 829 aa11.25□□□□□ -0.61
SS18-220ENST00000582092 SASH1O94885 1247 aa11.25□□□□□ -0.61
SS18-220ENST00000582092 CHMLP26374 656 aa11.25□□□□□ -0.61
SS18-220ENST00000582092 PTPN12Q05209 780 aaKnown RBP11.25□□□□□ -0.61
SS18-220ENST00000582092 TFCP2Q12800 502 aa11.25□□□□□ -0.61
SS18-220ENST00000582092 HLFQ16534 295 aa11.25□□□□□ -0.61
SS18-220ENST00000582092 STYK1Q6J9G0 422 aa11.25□□□□□ -0.61
SS18-220ENST00000582092 NLRP10Q86W26 655 aa11.25□□□□□ -0.61
SS18-220ENST00000582092 ESYT1Q9BSJ8 1104 aa11.25□□□□□ -0.61
SS18-220ENST00000582092 ANP32EQ9BTT0 268 aa11.25□□□□□ -0.61
SS18-220ENST00000582092 UTP14AQ9BVJ6 771 aaKnown RBP11.25□□□□□ -0.61
SS18-220ENST00000582092 FBXO3Q9UK99 471 aa11.25□□□□□ -0.61
SS18-220ENST00000582092 CDHR2Q9BYE9 1310 aa11.25□□□□□ -0.61
SS18-220ENST00000582092 ANKRD36CQ5JPF3 1778 aa11.25□□□□□ -0.61
SS18-220ENST00000582092 EYA2O00167 538 aa11.24□□□□□ -0.61
SS18-220ENST00000582092 NPR1P16066 1061 aa11.24□□□□□ -0.61
SS18-220ENST00000582092 ALDH1B1P30837 517 aa11.24□□□□□ -0.61
SS18-220ENST00000582092 RABEP1Q15276 862 aa11.24□□□□□ -0.61
SS18-220ENST00000582092 TNNI3KQ59H18 835 aa11.24□□□□□ -0.61
SS18-220ENST00000582092 EAF2Q96CJ1 260 aaPredicted RBP11.24□□□□□ -0.61
SS18-220ENST00000582092 PLA2G12BQ9BX93 195 aa11.24□□□□□ -0.61
SS18-220ENST00000582092 USP26Q9BXU7 913 aa11.24□□□□□ -0.61
SS18-220ENST00000582092 ANO2Q9NQ90 1003 aa11.24□□□□□ -0.61
SS18-220ENST00000582092 FPGT-TNNI3KV9GXZ4 949 aa11.24□□□□□ -0.61
SS18-220ENST00000582092 ST18O60284 1047 aa11.23□□□□□ -0.61
SS18-220ENST00000582092 CIAO1O76071 339 aa11.23□□□□□ -0.61
SS18-220ENST00000582092 SRGNP10124 158 aa11.23□□□□□ -0.61
SS18-220ENST00000582092 RFX5P48382 616 aaPredicted RBP11.23□□□□□ -0.61
SS18-220ENST00000582092 CCDC158Q5M9N0 1113 aa11.23□□□□□ -0.61
SS18-220ENST00000582092 CCDC24Q8N4L8 307 aa11.23□□□□□ -0.61
SS18-220ENST00000582092 PI4K2BQ8TCG2 481 aa11.23□□□□□ -0.61
SS18-220ENST00000582092 TMX4Q9H1E5 349 aaPredicted RBP11.23□□□□□ -0.61
SS18-220ENST00000582092 CNNM1Q9NRU3 951 aa11.23□□□□□ -0.61
SS18-220ENST00000582092 COL11A2P13942 1736 aaPredicted RBP11.22□□□□□ -0.61
SS18-220ENST00000582092 KCNJ4P48050 445 aa11.22□□□□□ -0.61
SS18-220ENST00000582092 CTSWP56202 376 aa11.22□□□□□ -0.61
SS18-220ENST00000582092 LRRFIP1Q32MZ4 808 aaKnown RBP11.22□□□□□ -0.61
SS18-220ENST00000582092 C9orf131Q5VYM1 1079 aa11.22□□□□□ -0.61
SS18-220ENST00000582092 LDHAL6AQ6ZMR3 332 aa11.22□□□□□ -0.61
SS18-220ENST00000582092 ZNF34Q8IZ26 560 aa11.22□□□□□ -0.61
SS18-220ENST00000582092 SH3TC1Q8TE82 1336 aa11.22□□□□□ -0.61
SS18-220ENST00000582092 RPGRQ92834 1020 aaKnown RBP11.22□□□□□ -0.61
SS18-220ENST00000582092 CCDC85AQ96PX6 553 aaPredicted RBP11.22□□□□□ -0.61
SS18-220ENST00000582092 FSD1Q9BTV5 496 aa11.22□□□□□ -0.61
SS18-220ENST00000582092 BOLA2Q9H3K6 86 aa11.22□□□□□ -0.61
SS18-220ENST00000582092 GPR108Q9NPR9 543 aa11.22□□□□□ -0.61
SS18-220ENST00000582092 RNF181Q9P0P0 153 aa11.22□□□□□ -0.61
SS18-220ENST00000582092 ZC3H4Q9UPT8 1303 aaKnown RBP11.22□□□□□ -0.61
SS18-220ENST00000582092 DICER1Q9UPY3 1922 aaKnown RBP11.22□□□□□ -0.61
SS18-220ENST00000582092 FER1L6Q2WGJ9 1857 aa11.21□□□□□ -0.61
SS18-220ENST00000582092 SLX4Q8IY92 1834 aa11.21□□□□□ -0.61
SS18-220ENST00000582092 EPB41L2O43491 1005 aaKnown RBP11.21□□□□□ -0.61
SS18-220ENST00000582092 ATP5JP18859 108 aa11.21□□□□□ -0.61
SS18-220ENST00000582092 LMNB1P20700 586 aa11.21□□□□□ -0.61
SS18-220ENST00000582092 METTL24Q5JXM2 366 aa11.21□□□□□ -0.61
SS18-220ENST00000582092 IL27Q8NEV9 243 aa11.21□□□□□ -0.61
SS18-220ENST00000582092 ZNF526Q8TF50 670 aaPredicted RBP11.21□□□□□ -0.61
SS18-220ENST00000582092 SNX21Q969T3 373 aa11.21□□□□□ -0.61
SS18-220ENST00000582092 ZNF594Q96JF6 807 aaPredicted RBP11.21□□□□□ -0.61
SS18-220ENST00000582092 NLRP3Q96P20 1036 aa11.21□□□□□ -0.61
SS18-220ENST00000582092 TBC1D2Q9BYX2 928 aa11.21□□□□□ -0.61
SS18-220ENST00000582092 KLRG2A4D1S0 409 aaPredicted RBP11.2□□□□□ -0.62
SS18-220ENST00000582092 C21orf2O43822 256 aa11.2□□□□□ -0.62
SS18-220ENST00000582092 CSF1RP07333 972 aa11.2□□□□□ -0.62
SS18-220ENST00000582092 ITGA6P23229 1130 aa11.2□□□□□ -0.62
SS18-220ENST00000582092 CCDC152Q4G0S7 254 aa11.2□□□□□ -0.62
SS18-220ENST00000582092 GRIPAP1Q4V328 841 aa11.2□□□□□ -0.62
SS18-220ENST00000582092 TTC39AQ5SRH9 613 aa11.2□□□□□ -0.62
SS18-220ENST00000582092 SUSD4Q5VX71 490 aa11.2□□□□□ -0.62
SS18-220ENST00000582092 PRPF40BQ6NWY9 871 aaKnown RBP11.2□□□□□ -0.62
SS18-220ENST00000582092 CWC27Q6UX04 472 aaKnown RBP11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms